Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Reverse (-)

25342719 .. 25343117

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG273500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGCACACCTCCAAAAAAAAGGAAAGTTTTGGCATAACTAGCATGAACAATCAGGAAGGAGGTGAAGCGCTGATTTCAACAAATGAAAGGTTGCGGTGGAGGAGACAACCGTCACCGAATATCCAGGAAGATGATTTGGTTGACCTTGTTGAAGACACCAAGGCCTTGATAACACAACTGTCTACTATGGAGAGGAGCCGTTGTGTAGTTTCTATATATAGTGGGAATGGGAGGTTTGGGCAAAGACCACTCCAGCAAAAAAATTGTACAATCACCCTCAGCTTGGGAACCTACTTCAATTTAGATCCTTTGTTTATGTTTCTCAAGAGTCAAGAGTACAAAAGAAAGAGAGATTCTACAAAAAATCATTCAAGATGTAAGTTTTCCTCACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

132

Amino Acids

15.31

Weight (kDa)

9.58

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	185
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	302
AfaI	GTAC	2 cut(s)	271, 341
AfeI	AGCGCT	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	4 cut(s)	81, 155, 301, 375
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	285
AluI	AGCT	1 cut(s)	285
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	302
Aor51HI	AGCGCT	1 cut(s)	72
AoxI	GGCC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	73
AsuHPI	GGTGA	3 cut(s)	77, 108, 268
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	9
BbvCI	CCTCAGC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	200, 292
BmrFI	CCNGG	1 cut(s)	128
BoxI	GACNNNNGTC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	295
BseRI	GAGGAG	2 cut(s)	118, 211
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp1407I	TGTACA	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	200, 292
BspPI	GGATC	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	114, 183
BstAUI	TGTACA	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	281
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	128
BstPAI	GACNNNNGTC	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	270, 340
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	3 cut(s)	167, 201, 285
CviKI_1	RGCY	3 cut(s)	167, 201, 285
CviQI	GTAC	2 cut(s)	270, 340
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	167
Eco47III	AGCGCT	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	49
FaiI	YATR	7 cut(s)	38, 47, 191, 218, 220, 222, 320
FatI	CATG	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	331, 356
HphI	GGTGA	3 cut(s)	77, 108, 268
Hpy166II	GTNNAC	2 cut(s)	145, 186
Hpy188III	TCNNGA	5 cut(s)	56, 328, 335, 375, 393
Hpy8I	GTNNAC	2 cut(s)	145, 186
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	114, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	2 cut(s)	4, 198
LpnPI	CCDG	4 cut(s)	41, 113, 140, 269
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	2 cut(s)	143, 167
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	2 cut(s)	265, 301
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	6 cut(s)	22, 56, 96, 189, 228, 290
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	200, 292
NmuCI	GTSAC	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	126
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PshAI	GACNNNNGTC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	200, 292
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	271, 341
RsaNI	GTAC	2 cut(s)	270, 340
Sau3AI	GATC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	7 cut(s)	14, 67, 95, 150, 239, 287, 296
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	2 cut(s)	265, 301
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	114, 183
TasI	AATT	2 cut(s)	265, 301
TatI	WGTACW	2 cut(s)	269, 339
TfiI	GAWTC	1 cut(s)	356
TseFI	GTSAC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	62, 102
XmiI	GTMKAC	1 cut(s)	185
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.