RchiOBHm_Chr7g0214541

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
31901388 .. 31902821
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19194

Sequence Viewer

Length: 1434 bp
ATGGCGGAATATGCTGTTTCGACTGCTGTGAGAAAGCTCACAACTTGGTTGATTGAAGAAGCAGTTCTGTTGAAAGGTGTGAGTGAGGAAGTTCAGCATCTCAGAGACACACTGAGTTGGATGCAAGGTTTCCTCGAGGATGCTGATGCGGTGCAAGAGAGATCAGAAAGATTTCAGGCTTGGATGTCACAAATAAGAGAAGTGGCATTCGAGGCCGAGGTGGCAATAGAAACTTACATCAGCAATACAGCAGCACGAAGTTCATGGAGAAAAGTCCTGAAGCCAATTCATCTTTTCAAAATCCGAAGAAAAATAGAAAAGATCCAGGCCAGGATGGAGCACATCTCCAAACAAAAGGAAAGTTTCGGCATAACTAGCATCAACAATCAGGAAGGGGGTGAAGCACTGATTTCAACAAATGAAAGGTTGCGGTGGTGGAGACAACCGTCACCGAATATGCAGGAAGATGATTTGGTTGACCTTGTTGAAGACACTAAGGCGTTGATAACACAACTGTCTACTATGGGAAGGAGCCGTTGTGTTGTTTCTATTGTGGGAATGGGAGGTTTGGGCAAGACCACTCTGGCAAAGAAGTTGTACAATCACCCTCAGCTTGGGAACCAATTTGCTTGTAGATCCTTTGTTTATGTGTCTCAAGAATACAAAAGAAGAGAGATTCTACAAAAAATCATTGAAGATGTAAATTGTCCTCATGATAGAGGTGATTTGGAGAAACTAAAAGAGGAGACGATGGTTGAGATGCTGCACGTGTTCCTGAAAGATAGGAGGTATCTGGTTATTCTTGATGATATATGGAAAAAGGAGGTTTGGGATGGTCTTAAAGCTGCATTTCCTAGTGGGGAGATGGGAAGTAAGGTGATGGTCACCACTCGCTTTAGGGATGTTGCTGTATATGCAGATCCAAGGAGCATTCCCTATGAGCCGCGGATGTTAACAGAACATGAGAGCTTGGAACTGTTCCTCAAGAAAGCACTTCCGGGAGTGGATGATATCCCCTCTAACTTGCAGAAACTTGGAAGAGAGATGGTGGTTAAATGTGGTGGTCTGCCTCTGGCAGTAGTTGTGCTCGGAGGATTACTGTCCACGAAAATGAAGACCACAGTGGAATGGGAGCGCGTGCTTCAAAACATCAGTTGGCATTTGATCAGTGCTCAAGATCAAGTCTCCGCAATCTTAGCCCTAAGCTACATTGACATGCCTATCCATTTAAAATCATGTTTTCTCCATTTGGGTATTTTTCCCGAAGATTCCTCCATAGAGAAAATGTATTTGATTCGACTGTGGGTTGCAGAAGGATTCTTACCACAACAAGGAGAAGAAATCGAAGAAGGGGTGGCTGAAAATTGCTTGAATCAGTTGCTTGATAGGTGCATGATCCCAGGTGGCAACGCGAACATATCTTGGCAGCGTTAA

Protein Analysis

477

Amino Acids

54.59

Weight (kDa)

6.03

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 91 8.3e-23 Rx N-terminal domain
NB-ARC PF00931 165 - 333 2.6e-42 NB-ARC domain
AAA_22 PF13401 181 - 271 1e-06 AAA domain
WHD_DRP PF23559 419 - 467 4.2e-13 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 134
AccI GTMKAC 1 cut(s) 518
AccII CGCG 3 cut(s) 946, 1137, 1412
AciI CCGC 6 cut(s) 5, 149, 430, 944, 946, 1188
AclWI GGATC 4 cut(s) 316, 630, 914, 1390
AcuI CTGAAG 1 cut(s) 299
AcvI CACGTG 1 cut(s) 769
AfaI GTAC 1 cut(s) 599
AfiI CCNNNNNNNGG 2 cut(s) 614, 1331
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 8 cut(s) 56, 73, 298, 414, 488, 695, 1145, 1372
AjnI CCWGG 3 cut(s) 324, 329, 1399
AluBI AGCT 5 cut(s) 37, 613, 845, 969, 1206
AluI AGCT 5 cut(s) 37, 613, 845, 969, 1206
Alw21I GWGCWC 3 cut(s) 342, 1089, 1174
Alw26I GTCTC 5 cut(s) 99, 433, 657, 740, 1189
AlwI GGATC 4 cut(s) 316, 630, 914, 1390
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 2 cut(s) 213, 327
ApeKI GCWGC 4 cut(s) 251, 763, 845, 1426
Asp700I GAANNNNTTC 2 cut(s) 63, 171
AspLEI GCGC 1 cut(s) 1137
AsuC2I CCSGG 1 cut(s) 999
AsuHPI GGTGA 6 cut(s) 410, 441, 596, 734, 877, 889
AvaI CYCGRG 1 cut(s) 134
BarI GAAGNNNNNNTAC 2 cut(s) 1305, 1337
BbrPI CACGTG 1 cut(s) 769
BbsI GAAGAC 2 cut(s) 495, 1121
Bbv12I GWGCWC 3 cut(s) 342, 1089, 1174
BbvCI CCTCAGC 1 cut(s) 609
BbvI GCAGC 3 cut(s) 263, 750, 832
BccI CCATC 6 cut(s) 328, 745, 827, 859, 874, 1039
BceAI ACGGC 1 cut(s) 519
BciT130I CCWGG 3 cut(s) 326, 331, 1401
BclI TGATCA 1 cut(s) 1164
BcnI CCSGG 1 cut(s) 999
BcoDI GTCTC 5 cut(s) 99, 433, 657, 740, 1189
BfaI CTAG 2 cut(s) 375, 855
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 5 cut(s) 252, 764, 846, 944, 1427
BlsI GCNGC 5 cut(s) 253, 765, 847, 945, 1428
Bme1390I CCNGG 4 cut(s) 326, 331, 999, 1401
BmeT110I CYCGRG 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 533, 620
BmrFI CCNGG 4 cut(s) 326, 331, 999, 1401
BmsI GCATC 6 cut(s) 106, 111, 130, 136, 387, 750
BoxI GACNNNNGTC 1 cut(s) 445
BpiI GAAGAC 2 cut(s) 495, 1121
BplI GAGNNNNNCTC 2 cut(s) 329, 361
Bpu10I CCTNAGC 2 cut(s) 609, 1202
BpuEI CTTGAG 3 cut(s) 639, 968, 1158
BpuMI CCSGG 1 cut(s) 999
BsaAI YACGTR 1 cut(s) 769
BsaJI CCNNGG 4 cut(s) 216, 923, 944, 1399
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 2 cut(s) 614, 1331
BseBI CCWGG 3 cut(s) 326, 331, 1401
BseDI CCNNGG 4 cut(s) 216, 923, 944, 1399
BseGI GGATG 8 cut(s) 126, 145, 189, 339, 838, 907, 954, 1012
BseLI CCNNNNNNNGG 2 cut(s) 614, 1331
BseMII CTCAG 3 cut(s) 104, 115, 623
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 3 cut(s) 263, 750, 832
BsgI GTGCAG 1 cut(s) 749
Bsh1236I CGCG 3 cut(s) 946, 1137, 1412
BshFI GGCC 2 cut(s) 215, 329
BsiHKAI GWGCWC 3 cut(s) 342, 1089, 1174
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 998
BslI CCNNNNNNNGG 2 cut(s) 614, 1331
BsmAI GTCTC 5 cut(s) 99, 433, 657, 740, 1189
BsmBI CGTCTC 1 cut(s) 740
BsmI GAATGC 2 cut(s) 206, 930
BsnI GGCC 2 cut(s) 215, 329
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 342, 1089, 1174
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 7 cut(s) 161, 321, 635, 919, 1164, 1177, 1395
BspACI CCGC 6 cut(s) 5, 149, 430, 944, 946, 1188
BspANI GGCC 2 cut(s) 215, 329
BspCNI CTCAG 3 cut(s) 105, 114, 622
BspFNI CGCG 3 cut(s) 946, 1137, 1412
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 2 cut(s) 533, 620
BspPI GGATC 4 cut(s) 316, 630, 914, 1390
BsrGI TGTACA 1 cut(s) 597
BssECI CCNNGG 4 cut(s) 216, 923, 944, 1399
BssMI GATC 7 cut(s) 161, 321, 635, 919, 1164, 1177, 1395
BssT1I CCWWGG 1 cut(s) 923
Bst2UI CCWGG 3 cut(s) 326, 331, 1401
Bst4CI ACNGT 6 cut(s) 447, 516, 978, 1101, 1123, 1302
Bst6I CTCTTC 2 cut(s) 664, 1033
BstAUI TGTACA 1 cut(s) 597
BstBAI YACGTR 1 cut(s) 769
BstC8I GCNNGC 1 cut(s) 1139
BstDEI CTNAG 6 cut(s) 101, 113, 495, 609, 1195, 1202
BstDSI CCRYGG 1 cut(s) 944
BstEII GGTNACC 1 cut(s) 883
BstF5I GGATG 8 cut(s) 126, 145, 189, 339, 838, 907, 954, 1012
BstFNI CGCG 3 cut(s) 946, 1137, 1412
BstHHI GCGC 1 cut(s) 1137
BstKTI GATC 7 cut(s) 164, 324, 638, 922, 1167, 1180, 1398
BstMAI GTCTC 5 cut(s) 99, 433, 657, 740, 1189
BstMBI GATC 7 cut(s) 161, 321, 635, 919, 1164, 1177, 1395
BstMWI GCNNNNNNNGC 6 cut(s) 11, 212, 221, 375, 914, 1196
BstNI CCWGG 3 cut(s) 326, 331, 1401
BstNSI RCATGY 1 cut(s) 1219
BstPAI GACNNNNGTC 1 cut(s) 445
BstPI GGTNACC 1 cut(s) 883
BstSCI CCNGG 4 cut(s) 324, 329, 997, 1399
BstUI CGCG 3 cut(s) 946, 1137, 1412
BstV1I GCAGC 3 cut(s) 263, 750, 832
BstV2I GAAGAC 2 cut(s) 495, 1121
BstX2I RGATCY 3 cut(s) 321, 635, 919
BstYI RGATCY 3 cut(s) 321, 635, 919
BsuRI GGCC 2 cut(s) 215, 329
BtgI CCRYGG 1 cut(s) 944
BtsCI GGATG 8 cut(s) 126, 145, 189, 339, 838, 907, 954, 1012
BtsIMutI CAGTG 4 cut(s) 110, 404, 1128, 1174
Cac8I GCNNGC 1 cut(s) 1139
CciI TCATGA 1 cut(s) 712
CfoI GCGC 1 cut(s) 1137
Cfr42I CCGCGG 1 cut(s) 947
Csp6I GTAC 1 cut(s) 598
CviAII CATG 6 cut(s) 264, 713, 962, 1216, 1236, 1393
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 6 cut(s) 101, 113, 495, 609, 1195, 1202
DpnI GATC 7 cut(s) 163, 323, 637, 921, 1166, 1179, 1397
DpnII GATC 7 cut(s) 161, 321, 635, 919, 1164, 1177, 1395
DraI TTTAAA 1 cut(s) 1230
Eam1104I CTCTTC 2 cut(s) 664, 1033
EarI CTCTTC 2 cut(s) 664, 1033
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 923
Eco32I GATATC 1 cut(s) 1012
Eco57I CTGAAG 1 cut(s) 299
Eco72I CACGTG 1 cut(s) 769
Eco88I CYCGRG 1 cut(s) 134
Eco91I GGTNACC 1 cut(s) 883
EcoO65I GGTNACC 1 cut(s) 883
EcoRII CCWGG 3 cut(s) 324, 329, 1399
EcoRV GATATC 1 cut(s) 1012
EcoT14I CCWWGG 1 cut(s) 923
ErhI CCWWGG 1 cut(s) 923
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 6 cut(s) 267, 716, 965, 1219, 1239, 1396
FatI CATG 6 cut(s) 263, 712, 961, 1215, 1235, 1392
FbaI TGATCA 1 cut(s) 1164
FblI GTMKAC 1 cut(s) 518
Fnu4HI GCNGC 5 cut(s) 252, 764, 846, 944, 1427
FokI GGATG 8 cut(s) 133, 152, 196, 346, 845, 914, 961, 1019
Fsp4HI GCNGC 5 cut(s) 252, 764, 846, 944, 1427
FspBI CTAG 2 cut(s) 375, 855
GlaI GCGC 1 cut(s) 1136
GluI GCNGC 5 cut(s) 252, 764, 846, 944, 1427
HaeIII GGCC 2 cut(s) 215, 329
HapII CCGG 1 cut(s) 998
HhaI GCGC 1 cut(s) 1137
Hin1II CATG 6 cut(s) 267, 716, 965, 1219, 1239, 1396
Hin6I GCGC 1 cut(s) 1135
HinP1I GCGC 1 cut(s) 1135
HincII GTYRAC 2 cut(s) 478, 954
HindII GTYRAC 2 cut(s) 478, 954
HinfI GANTC 5 cut(s) 676, 1268, 1294, 1317, 1372
HpaI GTTAAC 1 cut(s) 954
HpaII CCGG 1 cut(s) 998
HphI GGTGA 6 cut(s) 410, 441, 596, 734, 877, 889
Hpy166II GTNNAC 4 cut(s) 478, 519, 954, 1104
Hpy188I TCNGA 4 cut(s) 104, 166, 305, 1091
Hpy188III TCNNGA 9 cut(s) 277, 389, 656, 713, 775, 803, 985, 1175, 1262
Hpy8I GTNNAC 4 cut(s) 478, 519, 954, 1104
HpyAV CCTTC 4 cut(s) 386, 522, 1307, 1343
HpyCH4III ACNGT 6 cut(s) 447, 516, 978, 1101, 1123, 1302
HpyCH4IV ACGT 1 cut(s) 768
HpyCH4V TGCA 9 cut(s) 124, 154, 460, 766, 848, 917, 1027, 1310, 1392
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 212, 221, 375, 914, 1196
HpyF3I CTNAG 6 cut(s) 101, 113, 495, 609, 1195, 1202
HpySE526I ACGT 1 cut(s) 768
Hsp92II CATG 6 cut(s) 267, 716, 965, 1219, 1239, 1396
HspAI GCGC 1 cut(s) 1135
Ksp22I TGATCA 1 cut(s) 1164
KspAI GTTAAC 1 cut(s) 954
KspI CCGCGG 1 cut(s) 947
Kzo9I GATC 7 cut(s) 161, 321, 635, 919, 1164, 1177, 1395
LmnI GCTCC 4 cut(s) 337, 531, 927, 1132
Lsp1109I GCAGC 3 cut(s) 263, 750, 832
LweI GCATC 6 cut(s) 106, 111, 130, 136, 387, 750
MaeI CTAG 2 cut(s) 375, 855
MaeII ACGT 1 cut(s) 768
MaeIII GTNAC 3 cut(s) 186, 447, 883
MalI GATC 7 cut(s) 163, 323, 637, 921, 1166, 1179, 1397
MboI GATC 7 cut(s) 161, 321, 635, 919, 1164, 1177, 1395
MflI RGATCY 3 cut(s) 321, 635, 919
MhlI GDGCHC 3 cut(s) 342, 1089, 1174
MluCI AATT 4 cut(s) 285, 623, 703, 1363
MmeI TCCRAC 1 cut(s) 98
MroXI GAANNNNTTC 2 cut(s) 63, 171
MseI TTAA 5 cut(s) 840, 953, 1053, 1229, 1432
MslI CAYNNNNRTG 2 cut(s) 1109, 1214
MspA1I CMGCKG 1 cut(s) 946
MspI CCGG 1 cut(s) 998
MspR9I CCNGG 4 cut(s) 326, 331, 999, 1401
Mva1269I GAATGC 2 cut(s) 206, 930
MvaI CCWGG 3 cut(s) 326, 331, 1401
MvnI CGCG 3 cut(s) 946, 1137, 1412
MwoI GCNNNNNNNGC 6 cut(s) 11, 212, 221, 375, 914, 1196
NciI CCSGG 1 cut(s) 999
NdeII GATC 7 cut(s) 161, 321, 635, 919, 1164, 1177, 1395
NlaIII CATG 6 cut(s) 267, 716, 965, 1219, 1239, 1396
NlaIV GGNNCC 2 cut(s) 533, 620
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 3 cut(s) 186, 447, 883
NspI RCATGY 1 cut(s) 1219
PaeR7I CTCGAG 1 cut(s) 134
PagI TCATGA 1 cut(s) 712
PctI GAATGC 2 cut(s) 206, 930
PdmI GAANNNNTTC 2 cut(s) 63, 171
PfeI GAWTC 5 cut(s) 676, 1268, 1294, 1317, 1372
PfoI TCCNGGA 1 cut(s) 997
PkrI GCNGC 5 cut(s) 253, 765, 847, 945, 1428
PmaCI CACGTG 1 cut(s) 769
PmlI CACGTG 1 cut(s) 769
Ppu21I YACGTR 1 cut(s) 769
PshAI GACNNNNGTC 1 cut(s) 445
Psp6I CCWGG 3 cut(s) 324, 329, 1399
PspCI CACGTG 1 cut(s) 769
PspEI GGTNACC 1 cut(s) 883
PspGI CCWGG 3 cut(s) 324, 329, 1399
PspN4I GGNNCC 2 cut(s) 533, 620
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 3 cut(s) 321, 635, 919
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
RseI CAYNNNNRTG 2 cut(s) 1109, 1214
SacII CCGCGG 1 cut(s) 947
SaqAI TTAA 5 cut(s) 840, 953, 1053, 1229, 1432
SatI GCNGC 5 cut(s) 252, 764, 846, 944, 1427
Sau3AI GATC 7 cut(s) 161, 321, 635, 919, 1164, 1177, 1395
ScrFI CCNGG 4 cut(s) 326, 331, 999, 1401
SduI GDGCHC 3 cut(s) 342, 1089, 1174
SfaNI GCATC 6 cut(s) 106, 111, 130, 136, 387, 750
Sfr274I CTCGAG 1 cut(s) 134
Sfr303I CCGCGG 1 cut(s) 947
SgrBI CCGCGG 1 cut(s) 947
SlaI CTCGAG 1 cut(s) 134
SmiMI CAYNNNNRTG 2 cut(s) 1109, 1214
SmlI CTYRAG 4 cut(s) 134, 654, 983, 1173
SmoI CTYRAG 4 cut(s) 134, 654, 983, 1173
Sse9I AATT 4 cut(s) 285, 623, 703, 1363
SsiI CCGC 6 cut(s) 5, 149, 430, 944, 946, 1188
SspMI CTAG 2 cut(s) 375, 855
StyD4I CCNGG 4 cut(s) 324, 329, 997, 1399
StyI CCWWGG 1 cut(s) 923
TaaI ACNGT 6 cut(s) 447, 516, 978, 1101, 1123, 1302
TaiI ACGT 1 cut(s) 771
TaqI TCGA 5 cut(s) 20, 135, 210, 1297, 1344
TasI AATT 4 cut(s) 285, 623, 703, 1363
TatI WGTACW 1 cut(s) 597
TauI GCSGC 1 cut(s) 946
TfiI GAWTC 5 cut(s) 676, 1268, 1294, 1317, 1372
Tru1I TTAA 5 cut(s) 840, 953, 1053, 1229, 1432
Tru9I TTAA 5 cut(s) 840, 953, 1053, 1229, 1432
TscAI CASTG 4 cut(s) 117, 411, 1128, 1174
TseFI GTSAC 3 cut(s) 186, 447, 883
TseI GCWGC 4 cut(s) 251, 763, 845, 1426
Tsp45I GTSAC 3 cut(s) 186, 447, 883
TspDTI ATGAA 4 cut(s) 252, 278, 435, 1127
TspRI CASTG 4 cut(s) 117, 411, 1128, 1174
XceI RCATGY 1 cut(s) 1219
XhoI CTCGAG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 518
XmnI GAANNNNTTC 2 cut(s) 63, 171
XspI CTAG 2 cut(s) 375, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.