Rorug07G0146400

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
11545179 .. 11545505
327 bp
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UTR
Exon/CDS
Intron
Rorug07G0146400.1

Sequence Viewer

Length: 327 bp
ATGGCTGTTGCTGCCTCGGTGGGGGCCGAATTCAGTCTTTACTTCATTGTGTTCATCACTTCAGCTGATCTAACTAGTAGGGTTACGCACATTCCTGTTCTTTATATCGGAATCATCACCTTGGCTTATGCTTGTATGAGCATTTTCGTTCTTTGCCGAGGAGCCTGTGATATGGTTGCGAAGCGCAGAGAAGACCTCTTCAATGCTCTTGGTCAGTTTTTTTGCGCTTATTTGCGTCAGGGTGTGATCGGGGTCCTCATGTCTGAGTGCTGCTTCAAACTTGACGCTTCTTACGAGAACTTATCGTCAACATTGTTCTCGTTTTAG

Protein Analysis

108

Amino Acids

11.91

Weight (kDa)

5.63

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 2 cut(s) 202, 277
AhlI ACTAGT 1 cut(s) 74
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 11, 270
ApoI RAATTY 1 cut(s) 29
AspLEI GCGC 2 cut(s) 186, 227
AspS9I GGNCC 2 cut(s) 24, 253
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 257
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 1 cut(s) 75
BisI GCNGC 2 cut(s) 12, 271
BlsI GCNGC 2 cut(s) 13, 272
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 24, 253
BmiI GGNNCC 3 cut(s) 25, 163, 254
BpiI GAAGAC 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BsaJI CCNNGG 3 cut(s) 15, 120, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 15, 120, 157
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 257
BshFI GGCC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 67, 246
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 25, 163, 254
BssECI CCNNGG 3 cut(s) 15, 120, 157
BssMI GATC 2 cut(s) 67, 246
BssT1I CCWWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 264
BstHHI GCGC 2 cut(s) 186, 227
BstKTI GATC 2 cut(s) 70, 249
BstMBI GATC 2 cut(s) 67, 246
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 26
CfoI GCGC 2 cut(s) 186, 227
Cfr13I GGNCC 2 cut(s) 24, 253
CseI GACGC 2 cut(s) 224, 293
CviAII CATG 1 cut(s) 259
CviJI RGCY 5 cut(s) 5, 26, 65, 125, 164
CviKI_1 RGCY 5 cut(s) 5, 26, 65, 125, 164
DdeI CTNAG 1 cut(s) 264
DpnI GATC 2 cut(s) 69, 248
DpnII GATC 2 cut(s) 67, 246
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 262
FaiI YATR 5 cut(s) 105, 129, 137, 173, 260
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 12, 271
Fsp4HI GCNGC 2 cut(s) 12, 271
FspBI CTAG 1 cut(s) 75
GlaI GCGC 2 cut(s) 185, 226
GluI GCNGC 2 cut(s) 12, 271
HaeIII GGCC 1 cut(s) 26
HgaI GACGC 2 cut(s) 224, 293
HhaI GCGC 2 cut(s) 186, 227
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 2 cut(s) 184, 225
HinP1I GCGC 2 cut(s) 184, 225
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 1 cut(s) 111
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 2 cut(s) 110, 265
Hpy8I GTNNAC 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 2 cut(s) 184, 225
Kzo9I GATC 2 cut(s) 67, 246
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 3 cut(s) 108, 178, 224
Lsp1109I GCAGC 1 cut(s) 257
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 69, 248
MboI GATC 2 cut(s) 67, 246
MboII GAAGA 2 cut(s) 190, 203
MluCI AATT 1 cut(s) 29
MnlI CCTC 4 cut(s) 25, 152, 206, 266
MspA1I CMGCKG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 67, 246
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 3 cut(s) 25, 163, 254
NmeAIII GCCGAG 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 13, 272
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
PspN4I GGNNCC 3 cut(s) 25, 163, 254
PspPI GGNCC 2 cut(s) 24, 253
PspPPI RGGWCCY 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 65
SatI GCNGC 2 cut(s) 12, 271
Sau3AI GATC 2 cut(s) 67, 246
Sau96I GGNCC 2 cut(s) 24, 253
SetI ASST 3 cut(s) 67, 122, 198
SinI GGWCC 1 cut(s) 253
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 1 cut(s) 29
SspMI CTAG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 120
TasI AATT 1 cut(s) 29
TfiI GAWTC 1 cut(s) 111
TseI GCWGC 2 cut(s) 11, 270
TspDTI ATGAA 2 cut(s) 34, 43
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 1 cut(s) 29
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.