Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

2867448 .. 2868380

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG039100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGTCCAGGTGGGAACGCGCACATCTCTTGGCAGCGTTAAAACCATTCGCATCCATGATGTTCTCAGAGATTTCTCTCACAAAGGGAGGGAGCAAAATTTTCTTGGAATATATACATGGCAAGAACACGAGTTATCAGCATCCCATGACTCGACCAAATCTCAAAGGCTTGCCATCCACACCGTACAAGATTGGTATGTAAATCTAGACCCATATACCCATTTACTGTCCCTCCAATTTTTCTGCCAGGTTGAACGACGAAACTTAGATTTCACTCGCAAGAATTTTAAGTCGCTGAGGGTCTTAGAACTATATTCCAAGAGTCATAAGAGGCATGATCGCAGTGTAAATACCGTAGTTGAAGACTTAATTCAGTTGAGGTTTCTCCGACTTATAAACTTTATATATAGTTCAAGTCTGTCATCCTTGAAGAACCTACAAACACTTGATCTGAGATCTTCTTCTTCTGGTAACATGTTCAACGAGGTGAAGATAGAGAATCTGAGACATTTACTCATACCTGAAGATGAATCAGTTTATTTAACATTGGGTACCATGATCCATTTACAAACTCTAAAAGGCATAGAGGGCGGAAGATGGATAGAAGATGGTTTGGCCAAAATGATTAATCTTCGAAGACTGAAGATAAGAACACTATCACGAGACCGGGTGACATTAGTGATTTCTATTGCAGAAACATTGCGCCACCTTCAAGCGTTGTCGCTGACCCATGATGAATCTGCAGGTGAATTATTTCCACCACTTGAGGGACTCTCTCGCTGTGACCATCTTCAGAAGCTTCGTTTATGTGGAGAGATAGAGAAGCTACCTGATGCCAGTGGATTCCCACGAAACCTCGTAAAGCTAGTTTTGATGAGATCCAACCTCCCAAAAGATTCAGTGGTTATACTAGAGAGGTTTTGCCAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

310

Amino Acids

35.87

Weight (kDa)

9.37

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	91 - 292	4.5e-14	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AarI	CACCTGC	1 cut(s)	734
Acc36I	ACCTGC	1 cut(s)	734
Acc65I	GGTACC	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	551
AccII	CGCG	1 cut(s)	19
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	2 cut(s)	553, 873
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	2 cut(s)	97, 283
AcuI	CTGAAG	3 cut(s)	543, 662, 776
AfaI	GTAC	2 cut(s)	186, 553
AfiI	CCNNNNNNNGG	1 cut(s)	767
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	6 cut(s)	254, 362, 414, 430, 481, 713
AjnI	CCWGG	2 cut(s)	6, 246
AluBI	AGCT	3 cut(s)	799, 826, 865
AluI	AGCT	3 cut(s)	799, 826, 865
Alw26I	GTCTC	2 cut(s)	499, 657
AlwI	GGATC	2 cut(s)	553, 873
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	97, 283
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	753
Asp718I	GGTACC	1 cut(s)	551
AspLEI	GCGC	2 cut(s)	21, 705
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	3 cut(s)	499, 682, 758
AsuII	TTCGAA	1 cut(s)	634
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	551
BauI	CACGAG	2 cut(s)	128, 660
BbsI	GAAGAC	2 cut(s)	369, 643
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	4 cut(s)	182, 591, 602, 795
BciT130I	CCWGG	2 cut(s)	8, 248
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	2 cut(s)	499, 657
BfaI	CTAG	3 cut(s)	206, 866, 911
BfmI	CTRYAG	1 cut(s)	741
BfuAI	ACCTGC	1 cut(s)	734
BglII	AGATCT	1 cut(s)	455
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	3 cut(s)	8, 248, 668
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	3 cut(s)	8, 248, 668
BmsI	GCATC	3 cut(s)	60, 149, 823
BpiI	GAAGAC	2 cut(s)	369, 643
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
Bpu10I	CCTNAGC	1 cut(s)	296
Bpu14I	TTCGAA	1 cut(s)	634
BpuEI	CTTGAG	1 cut(s)	785
BpuMI	CCSGG	1 cut(s)	668
BsaI	GGTCTC	1 cut(s)	657
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	767
Bse1I	ACTGG	1 cut(s)	837
Bse3DI	GCAATG	1 cut(s)	698
BseBI	CCWGG	2 cut(s)	8, 248
BseGI	GGATG	4 cut(s)	51, 140, 174, 422
BseLI	CCNNNNNNNGG	1 cut(s)	767
BseMI	GCAATG	1 cut(s)	698
BseMII	CTCAG	4 cut(s)	79, 287, 443, 494
BseNI	ACTGG	1 cut(s)	837
BseXI	GCAGC	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	667
BslFI	GGGAC	2 cut(s)	214, 783
BslI	CCNNNNNNNGG	1 cut(s)	767
BsmAI	GTCTC	2 cut(s)	499, 657
BsmFI	GGGAC	2 cut(s)	214, 783
BsnI	GGCC	1 cut(s)	617
Bso31I	GGTCTC	1 cut(s)	657
Bsp119I	TTCGAA	1 cut(s)	634
Bsp143I	GATC	5 cut(s)	337, 448, 455, 558, 878
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	4 cut(s)	78, 288, 444, 495
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	553
BspMAI	CTGCAG	1 cut(s)	745
BspMI	ACCTGC	1 cut(s)	734
BspPI	GGATC	2 cut(s)	553, 873
BspT104I	TTCGAA	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	837
BssMI	GATC	5 cut(s)	337, 448, 455, 558, 878
BssSI	CACGAG	2 cut(s)	128, 660
Bst2BI	CACGAG	2 cut(s)	128, 660
Bst2UI	CCWGG	2 cut(s)	8, 248
Bst4CI	ACNGT	3 cut(s)	184, 228, 355
BstBI	TTCGAA	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	6 cut(s)	65, 265, 296, 304, 452, 503
BstF5I	GGATG	4 cut(s)	51, 140, 174, 422
BstFNI	CGCG	1 cut(s)	19
BstHHI	GCGC	2 cut(s)	21, 705
BstKTI	GATC	5 cut(s)	340, 451, 458, 561, 881
BstMAI	GTCTC	2 cut(s)	499, 657
BstMBI	GATC	5 cut(s)	337, 448, 455, 558, 878
BstMWI	GCNNNNNNNGC	1 cut(s)	588
BstNI	CCWGG	2 cut(s)	8, 248
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	3 cut(s)	6, 246, 666
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	2 cut(s)	369, 643
BstX2I	RGATCY	2 cut(s)	455, 878
BstYI	RGATCY	2 cut(s)	455, 878
BsuRI	GGCC	1 cut(s)	617
BtsCI	GGATG	4 cut(s)	51, 140, 174, 422
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	3 cut(s)	349, 844, 906
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	2 cut(s)	21, 705
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	185, 552
CviAII	CATG	7 cut(s)	56, 117, 146, 335, 475, 556, 731
CviJI	RGCY	5 cut(s)	169, 617, 799, 826, 865
CviKI_1	RGCY	5 cut(s)	169, 617, 799, 826, 865
CviQI	GTAC	2 cut(s)	185, 552
DdeI	CTNAG	6 cut(s)	65, 265, 296, 304, 452, 503
DpnI	GATC	5 cut(s)	339, 450, 457, 560, 880
DpnII	GATC	5 cut(s)	337, 448, 455, 558, 878
EaeI	YGGCCR	1 cut(s)	615
EciI	GGCGGA	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	3 cut(s)	543, 662, 776
EcoRII	CCWGG	2 cut(s)	6, 246
FaeI	CATG	7 cut(s)	59, 120, 149, 338, 478, 559, 734
FaqI	GGGAC	2 cut(s)	214, 783
FatI	CATG	7 cut(s)	55, 116, 145, 334, 474, 555, 730
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	4 cut(s)	38, 127, 161, 409
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	3 cut(s)	206, 866, 911
GlaI	GCGC	2 cut(s)	20, 704
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	617
HapII	CCGG	1 cut(s)	667
HhaI	GCGC	2 cut(s)	21, 705
Hin1II	CATG	7 cut(s)	59, 120, 149, 338, 478, 559, 734
Hin6I	GCGC	2 cut(s)	19, 703
HinP1I	GCGC	2 cut(s)	19, 703
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	8 cut(s)	149, 322, 499, 530, 737, 771, 843, 896
HpaII	CCGG	1 cut(s)	667
HphI	GGTGA	3 cut(s)	499, 682, 758
Hpy188I	TCNGA	5 cut(s)	68, 389, 453, 504, 795
Hpy188III	TCNNGA	2 cut(s)	206, 660
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	719
HpyCH4III	ACNGT	3 cut(s)	184, 228, 355
HpyCH4V	TGCA	2 cut(s)	692, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	588
HpyF3I	CTNAG	6 cut(s)	65, 265, 296, 304, 452, 503
Hsp92II	CATG	7 cut(s)	59, 120, 149, 338, 478, 559, 734
HspAI	GCGC	2 cut(s)	19, 703
KpnI	GGTACC	1 cut(s)	555
Kzo9I	GATC	5 cut(s)	337, 448, 455, 558, 878
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	20, 233, 260, 453, 534, 680, 729, 843, 850
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	3 cut(s)	60, 149, 823
MaeI	CTAG	3 cut(s)	206, 866, 911
MaeIII	GTNAC	3 cut(s)	470, 670, 782
MalI	GATC	5 cut(s)	339, 450, 457, 560, 880
MboI	GATC	5 cut(s)	337, 448, 455, 558, 878
MflI	RGATCY	2 cut(s)	455, 878
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	5 cut(s)	97, 236, 283, 369, 749
MluNI	TGGCCA	1 cut(s)	617
MlyI	GAGTC	3 cut(s)	143, 331, 765
MmeI	TCCRAC	2 cut(s)	412, 906
Mox20I	TGGCCA	1 cut(s)	617
MroXI	GAANNNNTTC	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	6 cut(s)	39, 288, 368, 542, 627, 931
Msp20I	TGGCCA	1 cut(s)	617
MspI	CCGG	1 cut(s)	667
MspR9I	CCNGG	3 cut(s)	8, 248, 668
MvaI	CCWGG	2 cut(s)	8, 248
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	588
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	5 cut(s)	337, 448, 455, 558, 878
NlaIII	CATG	7 cut(s)	59, 120, 149, 338, 478, 559, 734
NlaIV	GGNNCC	1 cut(s)	553
NmuCI	GTSAC	2 cut(s)	670, 782
NspI	RCATGY	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	634
PaqCI	CACCTGC	1 cut(s)	734
PciI	ACATGT	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	5 cut(s)	499, 530, 737, 843, 896
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	3 cut(s)	143, 330, 765
PpsI	GAGTC	3 cut(s)	143, 330, 765
PscI	ACATGT	1 cut(s)	474
PshBI	ATTAAT	1 cut(s)	627
PsiI	TTATAA	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	6, 246
PspGI	CCWGG	2 cut(s)	6, 246
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	2 cut(s)	455, 878
RsaI	GTAC	2 cut(s)	186, 553
RsaNI	GTAC	2 cut(s)	185, 552
SaqAI	TTAA	6 cut(s)	39, 288, 368, 542, 627, 931
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	5 cut(s)	337, 448, 455, 558, 878
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	143, 331, 765
ScrFI	CCNGG	3 cut(s)	8, 248, 668
SfaNI	GCATC	3 cut(s)	60, 149, 823
SfcI	CTRYAG	1 cut(s)	741
SfuI	TTCGAA	1 cut(s)	634
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	5 cut(s)	97, 236, 283, 369, 749
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	3 cut(s)	206, 866, 911
StyD4I	CCNGG	3 cut(s)	6, 246, 666
TaaI	ACNGT	3 cut(s)	184, 228, 355
TaqI	TCGA	2 cut(s)	152, 634
TasI	AATT	5 cut(s)	97, 236, 283, 369, 749
TfiI	GAWTC	5 cut(s)	499, 530, 737, 843, 896
Tru1I	TTAA	6 cut(s)	39, 288, 368, 542, 627, 931
Tru9I	TTAA	6 cut(s)	39, 288, 368, 542, 627, 931
TscAI	CASTG	3 cut(s)	349, 844, 906
TseFI	GTSAC	2 cut(s)	670, 782
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	2 cut(s)	670, 782
TspDTI	ATGAA	2 cut(s)	543, 750
TspRI	CASTG	3 cut(s)	349, 844, 906
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	2 cut(s)	97, 283
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	478
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	3 cut(s)	206, 866, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.