Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

15128639 .. 15130546

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G127200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGGCATATACTTTTCCCTTTTGTTTCGACTCTATGGTTATCTTTTATTTCAACTCAATCTACCACAAAACAGGCAGAGATCTCGTTTGCCATTAGATACATCCAACGGCTGCCTAATACTAAAAGGAAGATTATTGTCCACAAAAAGGAAGACCGCGGAGGAATGGAGAAGTGTGTTTCAAAACATCACATGGCGGCTGATTGATGAAGATCGTGTTTCTGCAGTTTTAGCTCTAAGCTACAATGATTTGTCTTTCTATTTAAAGTCTTGTTTTCTCCATTTGGGTCTTTTTCCTGAGGATTCCTCTATATCGAAAACAAAGATGATACACTTGTGGGTTGTAGAAAGATTCTTACCACAACAAGGGGAAGAAACCGCAGAAGGTGTTGCTGAAAATTGTTTAAATGAGTTGATTAATAGGTGCATGGTTCAAGTGGGAACACTAACCTCACTTGGAAGGGTAAAAACCATTCGCATGCATGATCTTCTCAGAGACTTGTCTATCTCCAAGGGGAAAGAGGAAAGTTTTCTTGAAATTAATAGCGGGCAAGAAATTGAATCGCCAACGTCACAACATACCAAATGTCGAAGGCTTGCAATCCATGGTGAACATGATAATCCGTATGTTTTTCTAAATCCGTATGCCCCCTACTTACGCTCCCTTCAATTTTTCAACATAGGGTATTCAAAATTTGGATTTATTTTCAAAGATTTCAAGTTGCTCATGGTCCTAGATGGTGTTCCCATGCCATCTCAGGCACTAAGTGCTGTAGGAAACCTAATTCAACTGAGGTATCTAGGAGTATTAATAAGAACAAAGAAGTTCAAAAAAGTCACTCTTCCTGAATCAATTGGAAAACTGAAGAATCTACACACACTTAAAGTCGATTATCATGTTTCGTTTAGTGTACGTTTCGTATGTTGGTGTTGTATCCCCGATGTTATTTGGAAGTTGAAGAATTTGAGACATTTGTTACTCGTCCATGGAGCCGGCGTAATGAATTTTAGATTGAATAATACCTTAAACAATTTAAGGACCCTAACAAATGTAGGGGCTGGAAGATGGATAGAAGATGGTCGTTTAGCCAGCATGACTGGTTTGCGACGACTGAAGATTGTACTACTAGAAAAAGGACATTTAAACTCGGTGCTTTCCAGCATAGAGAGATTGCACTGCCTTGAATCCTTGTCGCTGGAATTCCTGGTTAACCAAGTATTTCCAACACCCATAAGCCTTTCTCATTTTGAGCATCTCCACAAGCTCCATTTGGATGGGGTGATCAAGAGGCTACCTGAGCCACATGAATTCCCACCGAACCTCATCAAATTTAGTCTGTTAAATTCCGATCTCGAGGAAGATTCAATAGTTAAACTTCAGTGGTTGCCAAACCTAAAGATGCTTCTCTTGGGATACAATTCATACAAGTGGACAAAACTGGTTTGCTACTCGCAAGGGTTTCCTCAGTTGCACATTCTACATTTACTATCTTTAGAGTATTTGGAGGAATTGATAGTGGAAGAAGGGGCAATGATGAAGCTCAAGAATCTTAAGATAAGCCGCTGTCCAAGTTTGGGAAAGATTCCAGAACGATTTAAGTTATTGACTACATACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

540

Amino Acids

62.15

Weight (kDa)

9.34

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	158
AciI	CCGC	6 cut(s)	156, 158, 196, 378, 546, 1561
AcsI	RAATTY	7 cut(s)	692, 961, 1003, 1199, 1307, 1328, 1342
AcuI	CTGAAG	3 cut(s)	884, 1133, 1361
AdeI	CACNNNGTG	1 cut(s)	767
AfaI	GTAC	2 cut(s)	912, 1122
AfiI	CCNNNNNNNGG	3 cut(s)	147, 365, 1574
AflII	CTTAAG	1 cut(s)	1550
AjnI	CCWGG	1 cut(s)	1203
AluBI	AGCT	4 cut(s)	233, 240, 1264, 1540
AluI	AGCT	4 cut(s)	233, 240, 1264, 1540
Alw26I	GTCTC	2 cut(s)	489, 961
Ama87I	CYCGRG	1 cut(s)	1352
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	7 cut(s)	692, 961, 1003, 1199, 1307, 1328, 1342
AseI	ATTAAT	3 cut(s)	417, 540, 809
Asp700I	GAANNNNTTC	1 cut(s)	528
AspS9I	GGNCC	2 cut(s)	730, 1038
AsuHPI	GGTGA	2 cut(s)	620, 1291
AvaI	CYCGRG	1 cut(s)	1352
AvaII	GGWCC	2 cut(s)	730, 1038
AxyI	CCTNAGG	1 cut(s)	297
BaeI	ACNNNNGTAYC	4 cut(s)	320, 353, 779, 812
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	5 cut(s)	731, 760, 1059, 1070, 1268
BceAI	ACGGC	1 cut(s)	124
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	1205
BciVI	GTATCC	2 cut(s)	944, 1406
BclI	TGATCA	1 cut(s)	1281
BcoDI	GTCTC	2 cut(s)	489, 961
BfaI	CTAG	3 cut(s)	734, 800, 1127
BfmI	CTRYAG	2 cut(s)	222, 771
BfrI	CTTAAG	1 cut(s)	1550
BfuI	GTATCC	2 cut(s)	944, 1406
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	3 cut(s)	112, 197, 1561
BlsI	GCNGC	3 cut(s)	113, 198, 1562
Bme1390I	CCNGG	1 cut(s)	1205
Bme18I	GGWCC	2 cut(s)	730, 1038
BmeT110I	CYCGRG	1 cut(s)	1352
BmgT120I	GGNCC	2 cut(s)	730, 1038
BmiI	GGNNCC	2 cut(s)	991, 1040
BmrFI	CCNGG	1 cut(s)	1205
BmsI	GCATC	2 cut(s)	1261, 1389
BpiI	GAAGAC	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
Bpu10I	CCTNAGC	1 cut(s)	1296
BpuEI	CTTGAG	1 cut(s)	1526
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	156, 510, 604, 985
BsaXI	ACNNNNNCTCC	4 cut(s)	644, 674, 981, 1011
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 365, 1574
Bse118I	RCCGGY	1 cut(s)	992
Bse1I	ACTGG	2 cut(s)	1102, 1443
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	1536
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	1205
BseDI	CCNNGG	4 cut(s)	156, 510, 604, 985
BseGI	GGATG	2 cut(s)	101, 1279
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	147, 365, 1574
BseMI	GCAATG	1 cut(s)	1536
BseMII	CTCAG	6 cut(s)	288, 505, 770, 782, 1287, 1478
BseNI	ACTGG	2 cut(s)	1102, 1443
BseXI	GCAGC	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	1352
BsiSI	CCGG	1 cut(s)	993
BslI	CCNNNNNNNGG	3 cut(s)	147, 365, 1574
BsmAI	GTCTC	2 cut(s)	489, 961
BsoBI	CYCGRG	1 cut(s)	1352
Bsp143I	GATC	5 cut(s)	80, 211, 484, 1281, 1348
Bsp19I	CCATGG	2 cut(s)	604, 985
BspACI	CCGC	6 cut(s)	156, 158, 196, 378, 546, 1561
BspCNI	CTCAG	6 cut(s)	289, 504, 769, 783, 1288, 1477
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	991, 1040
BspMAI	CTGCAG	1 cut(s)	226
BspTI	CTTAAG	1 cut(s)	1550
BsrDI	GCAATG	1 cut(s)	1536
BsrFI	RCCGGY	1 cut(s)	992
BsrI	ACTGG	2 cut(s)	1102, 1443
BssAI	RCCGGY	1 cut(s)	992
BssECI	CCNNGG	4 cut(s)	156, 510, 604, 985
BssMI	GATC	5 cut(s)	80, 211, 484, 1281, 1348
BssT1I	CCWWGG	3 cut(s)	510, 604, 985
Bst2UI	CCWGG	1 cut(s)	1205
Bst6I	CTCTTC	1 cut(s)	846
BstAFI	CTTAAG	1 cut(s)	1550
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	5 cut(s)	479, 548, 597, 994, 1090
BstDEI	CTNAG	8 cut(s)	236, 297, 491, 756, 764, 791, 1296, 1464
BstDSI	CCRYGG	3 cut(s)	156, 604, 985
BstF5I	GGATG	2 cut(s)	101, 1279
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	5 cut(s)	83, 214, 487, 1284, 1351
BstMAI	GTCTC	2 cut(s)	489, 961
BstMBI	GATC	5 cut(s)	80, 211, 484, 1281, 1348
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 767, 1297
BstNI	CCWGG	1 cut(s)	1205
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	1203
BstSFI	CTRYAG	2 cut(s)	222, 771
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	1274
BstYI	RGATCY	1 cut(s)	80
Bsu36I	CCTNAGG	1 cut(s)	297
BsuI	GTATCC	2 cut(s)	944, 1406
BtgI	CCRYGG	3 cut(s)	156, 604, 985
BtsCI	GGATG	2 cut(s)	101, 1279
BtsI	GCAGTG	1 cut(s)	1174
BtsIMutI	CAGTG	2 cut(s)	1174, 1385
Cac8I	GCNNGC	5 cut(s)	479, 548, 597, 994, 1090
Cfr10I	RCCGGY	1 cut(s)	992
Cfr13I	GGNCC	2 cut(s)	730, 1038
Cfr42I	CCGCGG	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	911, 1121
CviQI	GTAC	2 cut(s)	911, 1121
DdeI	CTNAG	8 cut(s)	236, 297, 491, 756, 764, 791, 1296, 1464
DpnI	GATC	5 cut(s)	82, 213, 486, 1283, 1350
DpnII	GATC	5 cut(s)	80, 211, 484, 1281, 1348
DraI	TTTAAA	3 cut(s)	264, 405, 1143
DraIII	CACNNNGTG	1 cut(s)	767
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Eco130I	CCWWGG	3 cut(s)	510, 604, 985
Eco47I	GGWCC	2 cut(s)	730, 1038
Eco57I	CTGAAG	3 cut(s)	884, 1133, 1361
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	1352
EcoO109I	RGGNCCY	1 cut(s)	1038
EcoRI	GAATTC	2 cut(s)	1199, 1307
EcoRII	CCWGG	1 cut(s)	1203
EcoT14I	CCWWGG	3 cut(s)	510, 604, 985
EcoT22I	ATGCAT	1 cut(s)	483
ErhI	CCWWGG	3 cut(s)	510, 604, 985
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FauI	CCCGC	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	1281
Fnu4HI	GCNGC	3 cut(s)	112, 197, 1561
FokI	GGATG	2 cut(s)	88, 1286
Fsp4HI	GCNGC	3 cut(s)	112, 197, 1561
FspBI	CTAG	3 cut(s)	734, 800, 1127
GluI	GCNGC	3 cut(s)	112, 197, 1561
HapII	CCGG	1 cut(s)	993
HincII	GTYRAC	1 cut(s)	1210
HindII	GTYRAC	1 cut(s)	1210
HpaI	GTTAAC	1 cut(s)	1210
HpaII	CCGG	1 cut(s)	993
HphI	GGTGA	2 cut(s)	620, 1291
Hpy166II	GTNNAC	5 cut(s)	141, 611, 911, 1210, 1431
Hpy188I	TCNGA	2 cut(s)	494, 1348
Hpy188III	TCNNGA	8 cut(s)	296, 533, 845, 1285, 1352, 1543, 1586, 1617
Hpy8I	GTNNAC	5 cut(s)	141, 611, 911, 1210, 1431
Hpy99I	CGWCG	1 cut(s)	1110
HpyAV	CCTTC	5 cut(s)	377, 453, 585, 674, 1517
HpyCH4IV	ACGT	2 cut(s)	569, 913
HpyCH4V	TGCA	6 cut(s)	224, 426, 481, 599, 1174, 1471
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 767, 1297
HpyF3I	CTNAG	8 cut(s)	236, 297, 491, 756, 764, 791, 1296, 1464
HpySE526I	ACGT	2 cut(s)	569, 913
KroI	GCCGGC	1 cut(s)	992
KroNI	GCCGGC	1 cut(s)	994
Ksp22I	TGATCA	1 cut(s)	1281
KspAI	GTTAAC	1 cut(s)	1210
KspI	CCGCGG	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	80, 211, 484, 1281, 1348
LmnI	GCTCC	3 cut(s)	665, 989, 1269
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	1261, 1389
MaeI	CTAG	3 cut(s)	734, 800, 1127
MaeII	ACGT	2 cut(s)	569, 913
MaeIII	GTNAC	3 cut(s)	570, 835, 975
MalI	GATC	5 cut(s)	82, 213, 486, 1283, 1350
MboI	GATC	5 cut(s)	80, 211, 484, 1281, 1348
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	129, 1247
Mph1103I	ATGCAT	1 cut(s)	483
MroNI	GCCGGC	1 cut(s)	992
MroXI	GAANNNNTTC	1 cut(s)	528
MslI	CAYNNNNRTG	3 cut(s)	476, 1272, 1426
MspA1I	CMGCKG	2 cut(s)	158, 1563
MspCI	CTTAAG	1 cut(s)	1550
MspI	CCGG	1 cut(s)	993
MspR9I	CCNGG	1 cut(s)	1205
MunI	CAATTG	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	1205
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	230, 767, 1297
NaeI	GCCGGC	1 cut(s)	994
NcoI	CCATGG	2 cut(s)	604, 985
NdeII	GATC	5 cut(s)	80, 211, 484, 1281, 1348
NgoMIV	GCCGGC	1 cut(s)	992
NlaIV	GGNNCC	2 cut(s)	991, 1040
NmuCI	GTSAC	2 cut(s)	570, 835
NsiI	ATGCAT	1 cut(s)	483
NspI	RCATGY	1 cut(s)	481
PaeI	GCATGC	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	1352
PdiI	GCCGGC	1 cut(s)	994
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	9 cut(s)	302, 351, 560, 848, 868, 1184, 1361, 1546, 1582
PkrI	GCNGC	3 cut(s)	113, 198, 1562
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	1038
PshBI	ATTAAT	3 cut(s)	417, 540, 809
Psp5II	RGGWCCY	1 cut(s)	1038
Psp6I	CCWGG	1 cut(s)	1203
PspGI	CCWGG	1 cut(s)	1203
PspN4I	GGNNCC	2 cut(s)	991, 1040
PspPI	GGNCC	2 cut(s)	730, 1038
PspPPI	RGGWCCY	1 cut(s)	1038
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	912, 1122
RsaNI	GTAC	2 cut(s)	911, 1121
RseI	CAYNNNNRTG	3 cut(s)	476, 1272, 1426
SacII	CCGCGG	1 cut(s)	159
SatI	GCNGC	3 cut(s)	112, 197, 1561
Sau3AI	GATC	5 cut(s)	80, 211, 484, 1281, 1348
Sau96I	GGNCC	2 cut(s)	730, 1038
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	1205
SfaNI	GCATC	2 cut(s)	1261, 1389
SfcI	CTRYAG	2 cut(s)	222, 771
Sfr274I	CTCGAG	1 cut(s)	1352
Sfr303I	CCGCGG	1 cut(s)	159
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	2 cut(s)	730, 1038
SlaI	CTCGAG	1 cut(s)	1352
SmiMI	CAYNNNNRTG	3 cut(s)	476, 1272, 1426
SmlI	CTYRAG	3 cut(s)	1352, 1541, 1550
SmoI	CTYRAG	3 cut(s)	1352, 1541, 1550
SphI	GCATGC	1 cut(s)	481
SsiI	CCGC	6 cut(s)	156, 158, 196, 378, 546, 1561
SspMI	CTAG	3 cut(s)	734, 800, 1127
StyD4I	CCNGG	1 cut(s)	1203
StyI	CCWWGG	3 cut(s)	510, 604, 985
TaiI	ACGT	2 cut(s)	572, 916
TaqI	TCGA	5 cut(s)	28, 314, 589, 888, 1353
TatI	WGTACW	1 cut(s)	1120
TauI	GCSGC	2 cut(s)	199, 1563
TfiI	GAWTC	9 cut(s)	302, 351, 560, 848, 868, 1184, 1361, 1546, 1582
TscAI	CASTG	2 cut(s)	1181, 1385
TseFI	GTSAC	2 cut(s)	570, 835
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	2 cut(s)	570, 835
TspDTI	ATGAA	5 cut(s)	222, 1016, 1320, 1410, 1550
TspGWI	ACGGA	2 cut(s)	612, 630
TspRI	CASTG	2 cut(s)	1181, 1385
Vha464I	CTTAAG	1 cut(s)	1550
VpaK11BI	GGWCC	2 cut(s)	730, 1038
VspI	ATTAAT	3 cut(s)	417, 540, 809
XapI	RAATTY	7 cut(s)	692, 961, 1003, 1199, 1307, 1328, 1342
XceI	RCATGY	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	1352
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	3 cut(s)	734, 800, 1127
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.