Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

2871621 .. 2873733

Gene Structure 2113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG039400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTTAACAGAAGACGAGAGCTTGGAACTGTTCCTCAAGAAAGCACTCCCGGGAGCGGATGTGAATGATATCCCCTCTAACTTGTTGAACCTTGGAAGAAAGATGGTGGTTAAATGCGGTGGTCTACCACTGGCAGTAATTGTGCTCGGAGGATTACTTTCCACGAAATCGAAGACCACAGTGGAATGGGAGCGCGTGTTTCAAAACATCAGTTGGCATTTGATCAGTGCTCAAGATCGAGTCTCCGCATTCTTAGCCCTAAGCTACATTGACTTGCCTCTCCATTTAAAATCATGTTTTCTCCATTTGGGTATTTTCCCCGAAGATTCCTTCATAGAGAAAATGCATTTGATTCGACTGTGGGTTGCGGAAGGATTCTTACCACAACAAGGAGCACAAATCGAAGAAGAGGTGGCTGAAAATTGCTTGAATCAGTTGATTGATAGGTGCATGGTCCAGGTGGGAACGCGAACATATCTTGGCAGCGTTAAAACCATTCGCATCCATGATGTTCTCAGAGATTTTTCTCTCACAAAGGGGAGGGAGCAAAATTTTCTTGGAATATATACATGGCAAGAACACAAGTCATCAGCATCCCACGACTCGACCAAATCTCGAAGGCTTGCTATCCACACCGCAGATCGTTGGTATGTAAATCTAGACCCATATACCCATTTGCGCTCCCTCCATTTTTTCTGCGAGATTGATCTGCGACACTTAGATTTCACTCGCAAGAATTTTAAGTCGCTGAGGGTCTTGGAACTAAATTCCAAGAGTCGTAAGTGGCGTGAGCGCAGGGTAGATACTGTAGTTGATGACTTAATTCAGTTGAGATTTCTCGGACTTAGAGATTTTCCATATGGTTCAAGTCTGTTATCCTTGAAGAACCTACAAACACTTGATATGAGATTTGGTTACAGTGGTGGTGAGATGTTCAAAGAGGGAATCAAACCAATTGGAGGAAAACTCTTCCATACAAACACTTTAGAACTATATAAAGTGAATGGTTTGATCCCCTATCTAACCGATCAGTTTCAAAAGAAAAAAAGGTCTCTGAAGAAAACAAGATGTTTACCACGATTGATTTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

364

Amino Acids

42.06

Weight (kDa)

9.38

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	105 - 175	1.5e-19	Disease resistance protein Winged helix domain
LRR_14	PF23598	225 - 303	6.8e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	124
AccII	CGCG	2 cut(s)	195, 469
AciI	CCGC	5 cut(s)	56, 117, 246, 368, 636
AclWI	GGATC	1 cut(s)	1006
AcsI	RAATTY	3 cut(s)	550, 736, 766
AcuI	CTGAAG	1 cut(s)	1076
AfiI	CCNNNNNNNGG	3 cut(s)	55, 389, 959
AgsI	TTSAA	7 cut(s)	88, 203, 430, 867, 883, 937, 1037
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	2 cut(s)	21, 264
AluI	AGCT	2 cut(s)	21, 264
Alw21I	GWGCWC	3 cut(s)	147, 232, 397
Alw26I	GTCTC	2 cut(s)	247, 1056
AlwI	GGATC	1 cut(s)	1006
Ama87I	CYCGRG	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	483
ApoI	RAATTY	3 cut(s)	550, 736, 766
AspLEI	GCGC	3 cut(s)	195, 681, 795
AspS9I	GGNCC	1 cut(s)	454
AsuC2I	CCSGG	2 cut(s)	50, 51
AsuHPI	GGTGA	1 cut(s)	938
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	454
BaeI	ACNNNNGTAYC	2 cut(s)	795, 828
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BbsI	GAAGAC	2 cut(s)	18, 179
Bbv12I	GWGCWC	3 cut(s)	147, 232, 397
BbvCI	CCTCAGC	1 cut(s)	749
BbvI	GCAGC	1 cut(s)	495
BccI	CCATC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	458
BclI	TGATCA	1 cut(s)	222
BcnI	CCSGG	2 cut(s)	50, 51
BcoDI	GTCTC	2 cut(s)	247, 1056
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	1 cut(s)	807
BisI	GCNGC	1 cut(s)	484
BlsI	GCNGC	1 cut(s)	485
Bme1390I	CCNGG	3 cut(s)	50, 51, 458
Bme18I	GGWCC	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	454
BmrFI	CCNGG	3 cut(s)	50, 51, 458
BmsI	GCATC	2 cut(s)	510, 602
BpiI	GAAGAC	2 cut(s)	18, 179
BplI	GAGNNNNNCTC	2 cut(s)	951, 983
Bpu10I	CCTNAGC	2 cut(s)	260, 749
BpuEI	CTTGAG	2 cut(s)	20, 216
BpuMI	CCSGG	2 cut(s)	50, 51
BsaI	GGTCTC	1 cut(s)	1056
BsaJI	CCNNGG	2 cut(s)	49, 91
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 182, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 389, 959
Bse1I	ACTGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	49, 91
BseGI	GGATG	3 cut(s)	64, 501, 593
BseLI	CCNNNNNNNGG	3 cut(s)	55, 389, 959
BseMII	CTCAG	2 cut(s)	529, 740
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	495
Bsh1236I	CGCG	2 cut(s)	195, 469
BsiHKAI	GWGCWC	3 cut(s)	147, 232, 397
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	3 cut(s)	55, 389, 959
BsmAI	GTCTC	2 cut(s)	247, 1056
BsmI	GAATGC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	1056
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	3 cut(s)	147, 232, 397
Bsp143I	GATC	6 cut(s)	222, 235, 640, 706, 1011, 1027
BspACI	CCGC	5 cut(s)	56, 117, 246, 368, 636
BspCNI	CTCAG	2 cut(s)	528, 741
BspFNI	CGCG	2 cut(s)	195, 469
BspPI	GGATC	1 cut(s)	1006
BspTNI	GGTCTC	1 cut(s)	1056
BsrBI	CCGCTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	49, 91
BssMI	GATC	6 cut(s)	222, 235, 640, 706, 1011, 1027
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	5 cut(s)	30, 181, 360, 808, 920
Bst6I	CTCTTC	2 cut(s)	402, 974
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	6 cut(s)	253, 260, 515, 718, 749, 845
BstF5I	GGATG	3 cut(s)	64, 501, 593
BstFNI	CGCG	2 cut(s)	195, 469
BstHHI	GCGC	3 cut(s)	195, 681, 795
BstKTI	GATC	6 cut(s)	225, 238, 643, 709, 1014, 1030
BstMAI	GTCTC	2 cut(s)	247, 1056
BstMBI	GATC	6 cut(s)	222, 235, 640, 706, 1011, 1027
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	458
BstSCI	CCNGG	3 cut(s)	48, 49, 456
BstSFI	CTRYAG	1 cut(s)	807
BstUI	CGCG	2 cut(s)	195, 469
BstV1I	GCAGC	1 cut(s)	495
BstV2I	GAAGAC	2 cut(s)	18, 179
BtsCI	GGATG	3 cut(s)	64, 501, 593
BtsIMutI	CAGTG	4 cut(s)	128, 186, 232, 925
Cac8I	GCNNGC	1 cut(s)	624
CfoI	GCGC	3 cut(s)	195, 681, 795
Cfr13I	GGNCC	1 cut(s)	454
Cfr9I	CCCGGG	1 cut(s)	49
CviAII	CATG	4 cut(s)	294, 451, 506, 570
CviJI	RGCY	5 cut(s)	21, 257, 264, 416, 622
CviKI_1	RGCY	5 cut(s)	21, 257, 264, 416, 622
DdeI	CTNAG	6 cut(s)	253, 260, 515, 718, 749, 845
DpnI	GATC	6 cut(s)	224, 237, 642, 708, 1013, 1029
DpnII	GATC	6 cut(s)	222, 235, 640, 706, 1011, 1027
DraI	TTTAAA	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	402, 974
EarI	CTCTTC	2 cut(s)	402, 974
Eco130I	CCWWGG	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	1056
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	1076
Eco88I	CYCGRG	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	456
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	4 cut(s)	297, 454, 509, 573
FatI	CATG	4 cut(s)	293, 450, 505, 569
FauNDI	CATATG	1 cut(s)	859
FbaI	TGATCA	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	484
FokI	GGATG	3 cut(s)	71, 488, 580
Fsp4HI	GCNGC	1 cut(s)	484
FspBI	CTAG	1 cut(s)	659
GlaI	GCGC	3 cut(s)	194, 680, 794
GluI	GCNGC	1 cut(s)	484
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	3 cut(s)	195, 681, 795
Hin1II	CATG	4 cut(s)	297, 454, 509, 573
Hin6I	GCGC	3 cut(s)	193, 679, 793
HinP1I	GCGC	3 cut(s)	193, 679, 793
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	8 cut(s)	240, 326, 352, 375, 430, 602, 775, 945
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	938
Hpy166II	GTNNAC	3 cut(s)	6, 125, 1073
Hpy188I	TCNGA	4 cut(s)	149, 518, 842, 1056
Hpy188III	TCNNGA	4 cut(s)	37, 233, 615, 659
Hpy8I	GTNNAC	3 cut(s)	6, 125, 1073
HpyAV	CCTTC	3 cut(s)	340, 365, 612
HpyCH4III	ACNGT	5 cut(s)	30, 181, 360, 808, 920
HpyCH4V	TGCA	3 cut(s)	346, 450, 1090
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	6 cut(s)	253, 260, 515, 718, 749, 845
Hsp92II	CATG	4 cut(s)	297, 454, 509, 573
HspAI	GCGC	3 cut(s)	193, 679, 793
Ksp22I	TGATCA	1 cut(s)	222
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	222, 235, 640, 706, 1011, 1027
LmnI	GCTCC	5 cut(s)	53, 190, 392, 544, 686
LpnPI	CCDG	5 cut(s)	63, 116, 443, 470, 781
Lsp1109I	GCAGC	1 cut(s)	495
LweI	GCATC	2 cut(s)	510, 602
MaeI	CTAG	1 cut(s)	659
MaeIII	GTNAC	1 cut(s)	914
MalI	GATC	6 cut(s)	224, 237, 642, 708, 1013, 1029
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	6 cut(s)	222, 235, 640, 706, 1011, 1027
MboII	GAAGA	9 cut(s)	23, 108, 184, 335, 416, 419, 895, 961, 1069
MfeI	CAATTG	1 cut(s)	954
MhlI	GDGCHC	3 cut(s)	147, 232, 397
MluCI	AATT	7 cut(s)	138, 421, 550, 736, 766, 822, 954
MlyI	GAGTC	3 cut(s)	249, 596, 784
Mph1103I	ATGCAT	1 cut(s)	348
MseI	TTAA	6 cut(s)	5, 111, 287, 489, 741, 821
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	3 cut(s)	50, 51, 458
MunI	CAATTG	1 cut(s)	954
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	458
MvnI	CGCG	2 cut(s)	195, 469
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	2 cut(s)	50, 51
NdeI	CATATG	1 cut(s)	859
NdeII	GATC	6 cut(s)	222, 235, 640, 706, 1011, 1027
NlaIII	CATG	4 cut(s)	297, 454, 509, 573
NsiI	ATGCAT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	784
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	5 cut(s)	326, 352, 375, 430, 945
PkrI	GCNGC	1 cut(s)	485
PleI	GAGTC	3 cut(s)	248, 596, 783
PpsI	GAGTC	3 cut(s)	248, 596, 783
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	454
SaqAI	TTAA	6 cut(s)	5, 111, 287, 489, 741, 821
SatI	GCNGC	1 cut(s)	484
Sau3AI	GATC	6 cut(s)	222, 235, 640, 706, 1011, 1027
Sau96I	GGNCC	1 cut(s)	454
SchI	GAGTC	3 cut(s)	249, 596, 784
ScrFI	CCNGG	3 cut(s)	50, 51, 458
SduI	GDGCHC	3 cut(s)	147, 232, 397
SetI	ASST	8 cut(s)	23, 93, 266, 414, 449, 462, 891, 1052
SfaNI	GCATC	2 cut(s)	510, 602
SfcI	CTRYAG	1 cut(s)	807
SinI	GGWCC	1 cut(s)	454
SmaI	CCCGGG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	35, 231
SmoI	CTYRAG	2 cut(s)	35, 231
Sse9I	AATT	7 cut(s)	138, 421, 550, 736, 766, 822, 954
SsiI	CCGC	5 cut(s)	56, 117, 246, 368, 636
SspMI	CTAG	1 cut(s)	659
StyD4I	CCNGG	3 cut(s)	48, 49, 456
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	5 cut(s)	30, 181, 360, 808, 920
TaqI	TCGA	6 cut(s)	170, 238, 355, 402, 605, 616
TasI	AATT	7 cut(s)	138, 421, 550, 736, 766, 822, 954
TfiI	GAWTC	5 cut(s)	326, 352, 375, 430, 945
Tru1I	TTAA	6 cut(s)	5, 111, 287, 489, 741, 821
Tru9I	TTAA	6 cut(s)	5, 111, 287, 489, 741, 821
TscAI	CASTG	4 cut(s)	135, 186, 232, 925
TseI	GCWGC	1 cut(s)	483
TspDTI	ATGAA	1 cut(s)	322
TspMI	CCCGGG	1 cut(s)	49
TspRI	CASTG	4 cut(s)	135, 186, 232, 925
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	3 cut(s)	550, 736, 766
XbaI	TCTAGA	1 cut(s)	658
XmaI	CCCGGG	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	1 cut(s)	659
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.