Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004199.1

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Reverse (-)

256760 .. 257104

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004199.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgcaggaagatgacttggttcaccttgttgaagacaccaacgcgttgataacagaactgtctactatggagaggagccgttgtgtagtttctattgtgggcatgggaggtttgggcaagaccactctagccaaaaaattgtacaatcaccatgatcttgggaaccaatttgattgtagatcctttgtttatgtatcccaagagttcaacaggagagagattctacagagaatcattaaagatgtaggttgtcctcacaatagagatgacttggggaaaccagaagaggagacgatggtagaaaggctgcacatgttcctgaaagaggtatctggtggttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

114

Amino Acids

13.01

Weight (kDa)

5.48

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	62
AccII	CGCG	1 cut(s)	44
AclWI	GGATC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	325
AflIII	ACRYGT	2 cut(s)	42, 312
AgsI	TTSAA	2 cut(s)	32, 208
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	14, 140
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	63
BciVI	GTATCC	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	77, 164
BpiI	GAAGAC	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseRI	GAGGAG	2 cut(s)	88, 302
BseXI	GCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	284
BsmBI	CGTCTC	1 cut(s)	284
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	154, 179
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	77, 164
BspPI	GGATC	1 cut(s)	174
BsrGI	TGTACA	1 cut(s)	141
BssMI	GATC	2 cut(s)	154, 179
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	279
BstAUI	TGTACA	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	2 cut(s)	157, 182
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	2 cut(s)	154, 179
BstNSI	RCATGY	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	224
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	3 cut(s)	103, 152, 313
CviJI	RGCY	3 cut(s)	78, 131, 307
CviKI_1	RGCY	3 cut(s)	78, 131, 307
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	2 cut(s)	156, 181
DpnII	GATC	2 cut(s)	154, 179
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	3 cut(s)	106, 155, 316
FaiI	YATR	5 cut(s)	68, 104, 153, 192, 314
FatI	CATG	3 cut(s)	102, 151, 312
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	106, 155, 316
HinfI	GANTC	2 cut(s)	220, 231
HphI	GGTGA	2 cut(s)	14, 140
Hpy166II	GTNNAC	2 cut(s)	22, 63
Hpy188III	TCNNGA	2 cut(s)	319, 342
Hpy8I	GTNNAC	2 cut(s)	22, 63
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	4, 310
Hsp92II	CATG	3 cut(s)	106, 155, 316
Kzo9I	GATC	2 cut(s)	154, 179
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	4 cut(s)	196, 294, 318, 332
Lsp1109I	GCAGC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	128
MalI	GATC	2 cut(s)	156, 181
MboI	GATC	2 cut(s)	154, 179
MboII	GAAGA	3 cut(s)	20, 44, 296
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	2 cut(s)	137, 167
MluI	ACGCGT	1 cut(s)	42
MnlI	CCTC	5 cut(s)	66, 101, 264, 280, 319
MseI	TTAA	1 cut(s)	237
MvnI	CGCG	1 cut(s)	44
NdeII	GATC	2 cut(s)	154, 179
NlaIII	CATG	3 cut(s)	106, 155, 316
NlaIV	GGNNCC	2 cut(s)	77, 164
NspI	RCATGY	1 cut(s)	316
PciI	ACATGT	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	220, 231
PkrI	GCNGC	1 cut(s)	309
PscI	ACATGT	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	77, 164
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	154, 179
SetI	ASST	4 cut(s)	27, 112, 250, 330
SfcI	CTRYAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	137, 167
SspMI	CTAG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	60
TasI	AATT	2 cut(s)	137, 167
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	220, 231
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseI	GCWGC	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	323
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.