Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

38835245 .. 38835586

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002734

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCTTTCCTTAGAGTATGGATCTTACCCCTTCAGTGAATTGGTTTGCTCCTCAGAGGGGTTTCCGGAACTGCAAGTTCTACACTTAATATGGGAGGGGTTGGAGGTTTGGAAGGTGGAAGAAAGGGCATTGAAGAAGCTGAGGAAGCTAACGGTAGACCGTTGTTCACAATTAAAGATGGTTCCAGAAGGATTAAAGTCATTGTCTACTCTTCAGGAATTAAATGTTTATGAATCACCTGAGTTTGAACACATGCTTCGAACCAAGAAAGACCTGAATTCACAAAAAAACAGTCGATTAAGTTTGTCCAAGGACATTGTAACAGTATGGATTACTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

114

Amino Acids

13.14

Weight (kDa)

6.13

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	37 - 95	6.5e-06	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	156, 206
AccIII	TCCGGA	1 cut(s)	64
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	2 cut(s)	16, 197
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	133, 248
AluBI	AGCT	2 cut(s)	139, 148
AluI	AGCT	2 cut(s)	139, 148
AlwI	GGATC	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	277
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
AsuHPI	GGTGA	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
BseAI	TCCGGA	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	3 cut(s)	66, 131, 231
BseRI	GAGGAG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	259
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	20
BspCNI	CTCAG	3 cut(s)	65, 132, 232
BspEI	TCCGGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	4 cut(s)	154, 161, 293, 325
Bst6I	CTCTTC	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	259
BstDEI	CTNAG	4 cut(s)	10, 52, 140, 240
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	40
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	2 cut(s)	139, 148
CviKI_1	RGCY	2 cut(s)	139, 148
DdeI	CTNAG	4 cut(s)	10, 52, 140, 240
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	309
Eco57I	CTGAAG	2 cut(s)	16, 197
EcoRI	GAATTC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	1 cut(s)	256
FaiI	YATR	7 cut(s)	18, 91, 231, 254, 328, 338, 340
FatI	CATG	1 cut(s)	252
FblI	GTMKAC	2 cut(s)	156, 206
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	3 cut(s)	157, 167, 207
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	3 cut(s)	65, 185, 215
Hpy8I	GTNNAC	3 cut(s)	157, 167, 207
HpyAV	CCTTC	3 cut(s)	40, 106, 182
HpyCH4III	ACNGT	4 cut(s)	154, 161, 293, 325
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	4 cut(s)	10, 52, 140, 240
Hsp92II	CATG	1 cut(s)	256
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	5 cut(s)	78, 198, 200, 252, 287
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	3 cut(s)	131, 145, 203
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	4 cut(s)	38, 170, 218, 277
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	49, 61, 88, 97, 135
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	5 cut(s)	86, 173, 194, 221, 299
MspI	CCGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	183
NspI	RCATGY	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	20
SaqAI	TTAA	5 cut(s)	86, 173, 194, 221, 299
Sau3AI	GATC	1 cut(s)	20
SetI	ASST	6 cut(s)	108, 117, 141, 150, 241, 276
SfuI	TTCGAA	1 cut(s)	259
SgeI	CNNG	9 cut(s)	77, 86, 197, 227, 251, 265, 277, 286, 322
Sse9I	AATT	4 cut(s)	38, 170, 218, 277
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	4 cut(s)	154, 161, 293, 325
TaqI	TCGA	2 cut(s)	259, 295
TasI	AATT	4 cut(s)	38, 170, 218, 277
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	5 cut(s)	86, 173, 194, 221, 299
Tru9I	TTAA	5 cut(s)	86, 173, 194, 221, 299
TscAI	CASTG	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	40
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	256
XmiI	GTMKAC	2 cut(s)	156, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.