Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

2868383 .. 2868739

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG039200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCTTTCCTTGGGGCATGGATCTTACCCCTTCAGTGAATTGGTTTGCTCCTCAAAAGGATTTCCGCAACTGCAAGTTCTACACTTGGTTCGGGAGAAGTTGGAGGTTTGGAAGGTGGAAGAAGGGGCACTGCAGAAGCTCAGGCAGCTCACGATATACGGTTGTTCAGAATTAAAGCAGGTTCCAGAAGGATTGAAGTCATTGACTACTCTTCAGGAATTGGATATACTGGGATCACCTGAGTTTGAACACATGCTTCGAACTAATGAAGACCTGATCGAATTCACAAGAAAATACTCGATCAAATTCGTGCATAGACATTACGACGATTTTAAGAAATGGTCTTCAATGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

118

Amino Acids

13.81

Weight (kDa)

6.59

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	2 cut(s)	28, 241
AcsI	RAATTY	2 cut(s)	281, 305
AcuI	CTGAAG	2 cut(s)	16, 197
AgsI	TTSAA	3 cut(s)	196, 248, 348
AluBI	AGCT	2 cut(s)	139, 148
AluI	AGCT	2 cut(s)	139, 148
AlwI	GGATC	2 cut(s)	28, 241
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	2 cut(s)	281, 305
AsuHPI	GGTGA	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	130
BbsI	GAAGAC	2 cut(s)	276, 336
BbvI	GCAGC	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	2 cut(s)	276, 336
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	9
Bse1I	ACTGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	154, 231
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	157
Bsp119I	TTCGAA	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	20, 233, 276, 300
BspACI	CCGC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	153, 232
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	2 cut(s)	28, 241
BspT104I	TTCGAA	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	4 cut(s)	20, 233, 276, 300
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	140, 240
BstKTI	GATC	4 cut(s)	23, 236, 279, 303
BstMBI	GATC	4 cut(s)	20, 233, 276, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	276, 336
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	40, 128
BveI	ACCTGC	1 cut(s)	169
CviAII	CATG	2 cut(s)	17, 253
CviJI	RGCY	2 cut(s)	139, 148
CviKI_1	RGCY	2 cut(s)	139, 148
DdeI	CTNAG	2 cut(s)	140, 240
DpnI	GATC	4 cut(s)	22, 235, 278, 302
DpnII	GATC	4 cut(s)	20, 233, 276, 300
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	16, 197
EcoRI	GAATTC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	20, 256
FaiI	YATR	5 cut(s)	18, 157, 227, 254, 315
FatI	CATG	2 cut(s)	16, 252
Fnu4HI	GCNGC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	20, 256
HphI	GGTGA	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	4 cut(s)	92, 151, 185, 215
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	4 cut(s)	40, 106, 116, 182
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	4 cut(s)	73, 133, 313, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	140, 240
Hsp92II	CATG	2 cut(s)	20, 256
Kzo9I	GATC	4 cut(s)	20, 233, 276, 300
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	7 cut(s)	127, 164, 198, 200, 215, 252, 287
Lsp1109I	GCAGC	1 cut(s)	157
MalI	GATC	4 cut(s)	22, 235, 278, 302
MboI	GATC	4 cut(s)	20, 233, 276, 300
MboII	GAAGA	4 cut(s)	131, 203, 281, 336
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	5 cut(s)	38, 170, 218, 281, 305
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	2 cut(s)	61, 97
Mph1103I	ATGCAT	1 cut(s)	354
MseI	TTAA	2 cut(s)	173, 333
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	4 cut(s)	20, 233, 276, 300
NlaIII	CATG	2 cut(s)	20, 256
NlaIV	GGNNCC	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	354
NspI	RCATGY	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	173, 333
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	4 cut(s)	20, 233, 276, 300
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	7 cut(s)	108, 117, 141, 150, 183, 241, 276
SfcI	CTRYAG	1 cut(s)	131
SfuI	TTCGAA	1 cut(s)	259
Sse9I	AATT	5 cut(s)	38, 170, 218, 281, 305
SsiI	CCGC	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	3 cut(s)	259, 279, 299
TasI	AATT	5 cut(s)	38, 170, 218, 281, 305
Tru1I	TTAA	2 cut(s)	173, 333
Tru9I	TTAA	2 cut(s)	173, 333
TscAI	CASTG	2 cut(s)	40, 135
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	40, 135
XapI	RAATTY	2 cut(s)	281, 305
XceI	RCATGY	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.