Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Reverse (-)

11536902 .. 11540177

Gene Structure 3276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0146300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGACCAAAATGTAACAAAGAAGTTCAAGGGATTGGATGGGCATGCAGTACCAATTGCATATGTAAGTTCCAAGGGAAATTCTGGGCACCCACTTCTTGAGGCATCCAAGAGTTTCGAAGAGAATAAGGATGGTTTGACAGGCGGAGCTGATGGAAACACTCGAGCAGACCACCACACGCAAGGGAAAAATGGGTCTGACAGCGTGCGAACTGCTGATAATGATGTGAAAGACCATCCCCAGGTCCATCCAAACAATGAAGGGGAAATAAATAGGAACTTCACAACCTCTAATGATCTTGTGCGAGTACCTATTGGTTCTCCCTATGAGAAAATCGCAACTAGCACACTTTTCTTCTCTCCTTCTGCTGGTGAAAGGTTGCCTCTTGATGTAATGGTTCTGGATGAAAAGCAATTGAAACGAGAGAAAAGAAAACAGGCTAACAGAGAATCTGCAAGGAGATCTAGGATGAGGAAGCAGGCTGAATACGAGGAGCTGGTGAAAAGTTGTGATGCTCTAAGCACAGAACAGATGGACCTTAAATCTGAACTAGATCAATTGAAAGTGGATGCAGAAAAAATGAGGCTTGAAAATGCTGCATTAAGGGAGCAGCTGAAAAATGCACAGGTAATGCAGGAAGGAGGGAACGCTTCCCCTAAGACTGAAGGTGACTTCACCCTGCCAAATGATGCTAAGAACATACTTACTAATTTGGGTTCTGTAAGCAGTAATGCTCCGCCGGATTGTGAGACACATGAAACTTCTATTTCTGAAACAATTACCCGGCTCCATCAGTTGTTGGAATCAAGCTCTAGGACTGATGCTGTTGCTGCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

279

Amino Acids

30.71

Weight (kDa)

5.82

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	136 - 198	1.5e-16	bZIP transcription factor
bZIP_2	PF07716	140 - 188	9.5e-07	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AciI	CCGC	2 cut(s)	144, 737
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	2 cut(s)	51, 309
AfiI	CCNNNNNNNGG	2 cut(s)	241, 368
AgsI	TTSAA	4 cut(s)	28, 418, 562, 590
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	4 cut(s)	149, 496, 613, 810
AluI	AGCT	4 cut(s)	149, 496, 613, 810
Alw26I	GTCTC	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	596, 610, 830
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	4, 244, 535
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	4 cut(s)	383, 511, 667, 680
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	3 cut(s)	4, 244, 535
BaeGI	GKGCMC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	583, 622, 817
BccI	CCATC	7 cut(s)	32, 125, 146, 243, 255, 526, 798
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	5 cut(s)	342, 465, 551, 813, 834
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	3 cut(s)	597, 611, 831
BlsI	GCNGC	3 cut(s)	598, 612, 832
Bme1390I	CCNGG	2 cut(s)	242, 784
Bme18I	GGWCC	3 cut(s)	4, 244, 535
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	3 cut(s)	4, 244, 535
BmiI	GGNNCC	2 cut(s)	89, 788
BmrFI	CCNGG	2 cut(s)	242, 784
BmsI	GCATC	5 cut(s)	113, 502, 559, 679, 811
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	72, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 368
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	72, 240
BseGI	GGATG	8 cut(s)	43, 104, 136, 235, 247, 409, 474, 574
BseLI	CCNNNNNNNGG	2 cut(s)	241, 368
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	583, 622, 817
BshNI	GGYRCC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	740, 784
BslI	CCNNNNNNNGG	2 cut(s)	241, 368
BsmAI	GTCTC	1 cut(s)	743
BsoBI	CYCGRG	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	295, 461, 553
BspACI	CCGC	2 cut(s)	144, 737
BspLI	GGNNCC	2 cut(s)	89, 788
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	72, 240
BssMI	GATC	3 cut(s)	295, 461, 553
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	45, 206, 480
BstDEI	CTNAG	3 cut(s)	518, 657, 693
BstF5I	GGATG	8 cut(s)	43, 104, 136, 235, 247, 409, 474, 574
BstKTI	GATC	3 cut(s)	298, 464, 556
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	3 cut(s)	295, 461, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	830
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	240, 782
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	3 cut(s)	583, 622, 817
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BtsCI	GGATG	8 cut(s)	43, 104, 136, 235, 247, 409, 474, 574
Cac8I	GCNNGC	3 cut(s)	45, 206, 480
Cfr13I	GGNCC	3 cut(s)	4, 244, 535
Csp6I	GTAC	2 cut(s)	50, 308
CviAII	CATG	2 cut(s)	44, 755
CviJI	RGCY	8 cut(s)	149, 440, 482, 496, 586, 613, 787, 810
CviKI_1	RGCY	8 cut(s)	149, 440, 482, 496, 586, 613, 787, 810
CviQI	GTAC	2 cut(s)	50, 308
DdeI	CTNAG	3 cut(s)	518, 657, 693
DpnI	GATC	3 cut(s)	297, 463, 555
DpnII	GATC	3 cut(s)	295, 461, 553
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	2 cut(s)	159, 726
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	3 cut(s)	4, 244, 535
Eco57I	CTGAAG	1 cut(s)	684
Eco88I	CYCGRG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	47, 758
FaiI	YATR	6 cut(s)	45, 61, 63, 327, 701, 756
FatI	CATG	2 cut(s)	43, 754
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	597, 611, 831
FokI	GGATG	8 cut(s)	50, 91, 143, 222, 234, 416, 481, 581
Fsp4HI	GCNGC	3 cut(s)	597, 611, 831
FspBI	CTAG	5 cut(s)	342, 465, 551, 813, 834
GluI	GCNGC	3 cut(s)	597, 611, 831
HapII	CCGG	2 cut(s)	740, 784
Hin1II	CATG	2 cut(s)	47, 758
HinfI	GANTC	2 cut(s)	449, 803
HpaII	CCGG	2 cut(s)	740, 784
HphI	GGTGA	4 cut(s)	383, 511, 667, 680
Hpy188I	TCNGA	3 cut(s)	199, 547, 772
Hpy188III	TCNNGA	3 cut(s)	98, 386, 401
HpyAV	CCTTC	4 cut(s)	254, 372, 632, 659
HpyCH4V	TGCA	7 cut(s)	47, 59, 455, 572, 599, 623, 634
HpyF10VI	GCNNNNNNNGC	1 cut(s)	830
HpyF3I	CTNAG	3 cut(s)	518, 657, 693
Hsp92II	CATG	2 cut(s)	47, 758
Kzo9I	GATC	3 cut(s)	295, 461, 553
LmnI	GCTCC	5 cut(s)	146, 493, 607, 739, 792
Lsp1109I	GCAGC	3 cut(s)	583, 622, 817
LweI	GCATC	5 cut(s)	113, 502, 559, 679, 811
MaeI	CTAG	5 cut(s)	342, 465, 551, 813, 834
MaeIII	GTNAC	2 cut(s)	13, 668
MalI	GATC	3 cut(s)	297, 463, 555
MboI	GATC	3 cut(s)	295, 461, 553
MboII	GAAGA	2 cut(s)	131, 346
MfeI	CAATTG	3 cut(s)	54, 413, 557
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	6 cut(s)	54, 79, 413, 557, 709, 777
MmeI	TCCRAC	1 cut(s)	780
MnlI	CCTC	7 cut(s)	94, 298, 393, 465, 484, 576, 635
MseI	TTAA	2 cut(s)	540, 602
MspA1I	CMGCKG	1 cut(s)	613
MspI	CCGG	2 cut(s)	740, 784
MspR9I	CCNGG	2 cut(s)	242, 784
MunI	CAATTG	3 cut(s)	54, 413, 557
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	830
NciI	CCSGG	1 cut(s)	784
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	3 cut(s)	295, 461, 553
NlaIII	CATG	2 cut(s)	47, 758
NlaIV	GGNNCC	2 cut(s)	89, 788
NmuCI	GTSAC	1 cut(s)	668
NspI	RCATGY	1 cut(s)	47
NspV	TTCGAA	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	47
PaeR7I	CTCGAG	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	449, 803
PkrI	GCNGC	3 cut(s)	598, 612, 832
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	89, 788
PspPI	GGNCC	3 cut(s)	4, 244, 535
PspXI	VCTCGAGB	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	2 cut(s)	51, 309
RsaNI	GTAC	2 cut(s)	50, 308
SaqAI	TTAA	2 cut(s)	540, 602
SatI	GCNGC	3 cut(s)	597, 611, 831
Sau3AI	GATC	3 cut(s)	295, 461, 553
Sau96I	GGNCC	3 cut(s)	4, 244, 535
ScrFI	CCNGG	2 cut(s)	242, 784
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	5 cut(s)	113, 502, 559, 679, 811
Sfr274I	CTCGAG	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	3 cut(s)	4, 244, 535
SlaI	CTCGAG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	98, 162
SmoI	CTYRAG	2 cut(s)	98, 162
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	6 cut(s)	54, 79, 413, 557, 709, 777
SsiI	CCGC	2 cut(s)	144, 737
SspMI	CTAG	5 cut(s)	342, 465, 551, 813, 834
StyD4I	CCNGG	2 cut(s)	240, 782
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	2 cut(s)	117, 163
TasI	AATT	6 cut(s)	54, 79, 413, 557, 709, 777
TfiI	GAWTC	2 cut(s)	449, 803
Tru1I	TTAA	2 cut(s)	540, 602
Tru9I	TTAA	2 cut(s)	540, 602
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	3 cut(s)	596, 610, 830
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	3 cut(s)	273, 420, 771
VpaK11BI	GGWCC	3 cut(s)	4, 244, 535
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	162
XspI	CTAG	5 cut(s)	342, 465, 551, 813, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.