Prupe.6G153300_v2.0.a1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
13338258 .. 13340299
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G153300.1

Sequence Viewer

Length: 1866 bp
ATGAGAAAATTTCATCTCATTGCCCGTTACGGGACAATGACTAACTTGGACCCAAGCCTCACTAGTAAGGTGATGCTGACAACCCGAAACAGGGAGGTTGCCTTACATGCAGATGCAAGGAGCACTCCCCATGAGCCGCGAATGCTGACAGAGGATGAAAGCCTGGAATTGTTTCGCAAGAAAGCACTCCCGGGAATGGATCATTTTCCCTCCGACTTGGAGAATCTAGGAAGAGAGATGGTGACGAAATGCGGTGGTCTACCCTTGGCATTGGTGGTGCTTGGGGGATTACTATCCAGGAAAATGAAGACTAGAGAGGAATGGGAACTTGTCCTTCAAAACATCAGTTGGCACCTGATTGATCAAGATCGTGTTTCTGCAATTTTAGCCCTGAGCTATAAAGACTTGCCTTTCTACTTAAAATCATGTTTTCTCCATTTGGGTCTTTTTCCTGAGGATTTCTCCATACCAAAAACGCAATTGATGCGCTTGTGGGTAGCAGAAGGATTCTTACCCCAACAAGGGGAAGATACAGCAGAAGGTGTAGCTGAAAATTGCTTGAACGAGTTGATTAATAGGTGCATGATCCAAGTGGGAACTCTAACCTCACTTGGGAGGGTTAAGACCATCAGCATCCATGATCTTCTTAGAGACTTCTCTCTCTCCGTATCGAGGGAAGAAAATTTTCTAGGAATTTATACTGGTGGTGAAGTTGAATCATCAGTTTCCCCATCAACCAAATCTCGAAGAATTGCCTTAAATTCTAACCCTACGCAGCATGGTTTCCTACACTCACCTTTCCTAAATCCATATGCTCCCCATTTACGATCCCTTCATTTTTTCAACCGCTTTCAACATCCAGAATTCTATTTTATTAAAAAGGATTTCAAGTTGCTGAAGGTCTTGGATCTAAAGCATGCAATGGGATCCACGCACACACCTAGTGCTATAGGGATCCTAATTCAGTTGAGGTATCTTGGAGTGAGCCAGATTTTTAAAAATTGCTACATCCCACCATCGATTGGAAACTTGAAGAACCTAGAGACACTGGATTTGGGAACTTCTTTTTCACCCATCCCCAATGTAATTTGGAAGATGAAACGTTTGAGGCATTTGCTGCTTTGTGATAAGTCCCAACCAAATCGTGTCAAGCTTAGATTGGACACCTTGAGCCATTTACAGACCCTAAAAACTATAAGGGCTGGAAGATGGATAGAAGACGGAGGCTTAGCCAACATGATCAGTCTACGACGACTGGGAATAGAAAGATTATCACAAGAAAGGGTAAACTTGGTGATTTCAATACTAAGGAGAATGTGCTACCTGCAATCGTTGTCACTGGAGGTGATGAACAATGAAACATTCCCAACATCCATGGGCCTCTCTCATTTCCAACATCTCCACAAGCTGTGTTTGAAGGGGAAAATAGAGAAGTTACCTCATGTACGTGAATTTCCGCCAAACCTAGTCAAGCTAAGTTTGATTGGTTCTGAGCTCCAGAAAGATTCGATAGTTCAACTAGAAAGGTTGCCATACCTGAAGATGCTTGTCTTGGGGAACCAATCATACAAATGGAGGGAACTGGTTTCCTCTTCAGAAGGGTTTCCACAACTGCAAGTTCTACACCTTGTTTCTTTAATGGAGTTGGAGGAATGGACAGTGGAAGAAAATGCAATGATGAAGCTCAAGCATCTGAAGATAGAAGATTGCCCCAGACTGAAGATTCCAGAAAGATTGAAGTTGTCGAATACTGTTAAGATATTAGAGGTTGTTACAGAGTACGACCCGTTCAAACGATGGCGTTCGCCTGAATGGACAAAAGCTTCAAAAAACAGATTAGATTGTTTCAAATGTTTCCAAGATTAA

Protein Analysis

622

Amino Acids

71.52

Weight (kDa)

9.28

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1332
AccB1I GGYRCC 1 cut(s) 351
AccB7I CCANNNNNTGG 1 cut(s) 1022
AccI GTMKAC 2 cut(s) 259, 1246
AccII CGCG 1 cut(s) 139
AciI CCGC 4 cut(s) 137, 252, 847, 1457
AclI AACGTT 1 cut(s) 1102
AclWI GGATC 8 cut(s) 207, 580, 822, 915, 921, 934, 949, 962
AcsI RAATTY 6 cut(s) 8, 682, 693, 760, 863, 1451
AcuI CTGAAG 5 cut(s) 917, 1559, 1578, 1715, 1739
AdeI CACNNNGTG 1 cut(s) 944
AfaI GTAC 2 cut(s) 1446, 1781
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 2 cut(s) 162, 296
AluBI AGCT 8 cut(s) 396, 548, 1153, 1408, 1474, 1495, 1684, 1823
AluI AGCT 8 cut(s) 396, 548, 1153, 1408, 1474, 1495, 1684, 1823
Alw21I GWGCWC 2 cut(s) 125, 1497
Alw26I GTCTC 2 cut(s) 645, 1037
AlwI GGATC 8 cut(s) 207, 580, 822, 915, 921, 934, 949, 962
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 1 cut(s) 1378
ApeKI GCWGC 2 cut(s) 775, 1117
ApoI RAATTY 6 cut(s) 8, 682, 693, 760, 863, 1451
ArsI GACNNNNNNTTYG 2 cut(s) 1036, 1068
AseI ATTAAT 1 cut(s) 573
Asp700I GAANNNNTTC 3 cut(s) 171, 684, 1602
AspLEI GCGC 1 cut(s) 489
AspS9I GGNCC 2 cut(s) 49, 1378
AsuC2I CCSGG 2 cut(s) 191, 192
AsuHPI GGTGA 7 cut(s) 82, 253, 719, 786, 1062, 1306, 1357
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 1 cut(s) 49
AxyI CCTNAGG 1 cut(s) 453
BamHI GGATCC 2 cut(s) 926, 954
BanI GGYRCC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 1497
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BbsI GAAGAC 2 cut(s) 314, 1224
Bbv12I GWGCWC 2 cut(s) 125, 1497
BbvI GCAGC 2 cut(s) 787, 1104
BccI CCATC 7 cut(s) 232, 635, 739, 1024, 1082, 1203, 1791
BciT130I CCWGG 2 cut(s) 164, 298
BclI TGATCA 2 cut(s) 361, 1239
BcnI CCSGG 2 cut(s) 191, 192
BcoDI GTCTC 2 cut(s) 645, 1037
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 8 cut(s) 63, 227, 312, 689, 942, 1040, 1466, 1520
BfmI CTRYAG 1 cut(s) 948
BfuAI ACCTGC 1 cut(s) 1332
BisI GCNGC 3 cut(s) 137, 776, 1118
BlpI GCTNAGC 1 cut(s) 1228
BlsI GCNGC 3 cut(s) 138, 777, 1119
Bme1390I CCNGG 4 cut(s) 164, 191, 192, 298
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 49, 1378
BmiI GGNNCC 5 cut(s) 51, 353, 928, 956, 1559
BmrFI CCNGG 4 cut(s) 164, 191, 192, 298
BmrI ACTGGG 1 cut(s) 1265
BmsI GCATC 6 cut(s) 63, 103, 474, 642, 1533, 1699
BmuI ACTGGG 1 cut(s) 1265
BpiI GAAGAC 2 cut(s) 314, 1224
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BpmI CTGGAG 2 cut(s) 1361, 1481
Bpu10I CCTNAGC 1 cut(s) 392
Bpu1102I GCTNAGC 1 cut(s) 1228
BpuEI CTTGAG 2 cut(s) 1189, 1670
BpuMI CCSGG 2 cut(s) 191, 192
Bsa29I ATCGAT 1 cut(s) 1019
BsaAI YACGTR 1 cut(s) 1448
BsaBI GATNNNNATC 2 cut(s) 292, 366
BsaJI CCNNGG 3 cut(s) 190, 264, 1374
Bse1I ACTGG 5 cut(s) 706, 1053, 1260, 1344, 1587
Bse21I CCTNAGG 1 cut(s) 453
Bse3DI GCAATG 3 cut(s) 18, 927, 1680
Bse8I GATNNNNATC 2 cut(s) 292, 366
BseBI CCWGG 2 cut(s) 164, 298
BseCI ATCGAT 1 cut(s) 1019
BseDI CCNNGG 3 cut(s) 190, 264, 1374
BseGI GGATG 6 cut(s) 160, 633, 856, 1008, 1074, 1370
BseJI GATNNNNATC 2 cut(s) 292, 366
BseMI GCAATG 3 cut(s) 18, 927, 1680
BseMII CTCAG 3 cut(s) 383, 444, 1482
BseNI ACTGG 5 cut(s) 706, 1053, 1260, 1344, 1587
BseXI GCAGC 2 cut(s) 787, 1104
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 1380
BshNI GGYRCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 1019
BsiHKAI GWGCWC 2 cut(s) 125, 1497
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 2 cut(s) 46, 1117
BsmAI GTCTC 2 cut(s) 645, 1037
BsmFI GGGAC 2 cut(s) 46, 1117
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 1 cut(s) 1380
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 125, 1497
Bsp1720I GCTNAGC 1 cut(s) 1228
Bsp19I CCATGG 1 cut(s) 1374
BspACI CCGC 4 cut(s) 137, 252, 847, 1457
BspANI GGCC 1 cut(s) 1380
BspCNI CTCAG 3 cut(s) 384, 445, 1483
BspDI ATCGAT 1 cut(s) 1019
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 5 cut(s) 51, 353, 928, 956, 1559
BspMI ACCTGC 1 cut(s) 1332
BspPI GGATC 8 cut(s) 207, 580, 822, 915, 921, 934, 949, 962
BspT107I GGYRCC 1 cut(s) 351
BsrDI GCAATG 3 cut(s) 18, 927, 1680
BsrI ACTGG 5 cut(s) 706, 1053, 1260, 1344, 1587
BssECI CCNNGG 3 cut(s) 190, 264, 1374
BssT1I CCWWGG 2 cut(s) 264, 1374
Bst2UI CCWGG 2 cut(s) 164, 298
Bst4CI ACNGT 2 cut(s) 1660, 1753
Bst6I CTCTTC 2 cut(s) 226, 1597
BstAPI GCANNNNNTGC 2 cut(s) 484, 1117
BstBAI YACGTR 1 cut(s) 1448
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 8 cut(s) 392, 453, 647, 1154, 1228, 1307, 1475, 1491
BstDSI CCRYGG 1 cut(s) 1374
BstF5I GGATG 6 cut(s) 160, 633, 856, 1008, 1074, 1370
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 489
BstMAI GTCTC 2 cut(s) 645, 1037
BstMWI GCNNNNNNNGC 5 cut(s) 107, 142, 386, 484, 1117
BstNI CCWGG 2 cut(s) 164, 298
BstNSI RCATGY 2 cut(s) 110, 920
BstSCI CCNGG 4 cut(s) 162, 189, 190, 296
BstSFI CTRYAG 1 cut(s) 948
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 787, 1104
BstV2I GAAGAC 2 cut(s) 314, 1224
BstX2I RGATCY 3 cut(s) 907, 926, 954
BstYI RGATCY 3 cut(s) 907, 926, 954
Bsu15I ATCGAT 1 cut(s) 1019
Bsu36I CCTNAGG 1 cut(s) 453
BsuRI GGCC 1 cut(s) 1380
BsuTUI ATCGAT 1 cut(s) 1019
BtgI CCRYGG 1 cut(s) 1374
BtsCI GGATG 6 cut(s) 160, 633, 856, 1008, 1074, 1370
BtsIMutI CAGTG 3 cut(s) 1046, 1337, 1665
BveI ACCTGC 1 cut(s) 1332
Cac8I GCNNGC 1 cut(s) 918
CfoI GCGC 1 cut(s) 489
Cfr13I GGNCC 2 cut(s) 49, 1378
Cfr9I CCCGGG 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 1019
Csp6I GTAC 2 cut(s) 1445, 1780
CviQI GTAC 2 cut(s) 1445, 1780
DdeI CTNAG 8 cut(s) 392, 453, 647, 1154, 1228, 1307, 1475, 1491
DraI TTTAAA 1 cut(s) 997
DraIII CACNNNGTG 1 cut(s) 944
Eam1104I CTCTTC 2 cut(s) 226, 1597
EarI CTCTTC 2 cut(s) 226, 1597
EciI GGCGGA 1 cut(s) 1446
Ecl136II GAGCTC 1 cut(s) 1495
Eco130I CCWWGG 2 cut(s) 264, 1374
Eco24I GRGCYC 1 cut(s) 1497
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 1495
Eco57I CTGAAG 5 cut(s) 917, 1559, 1578, 1715, 1739
Eco81I CCTNAGG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 1495
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 2 cut(s) 162, 296
EcoT14I CCWWGG 2 cut(s) 264, 1374
EcoT38I GRGCYC 1 cut(s) 1497
ErhI CCWWGG 2 cut(s) 264, 1374
FaqI GGGAC 2 cut(s) 46, 1117
FauNDI CATATG 1 cut(s) 811
FbaI TGATCA 2 cut(s) 361, 1239
FblI GTMKAC 2 cut(s) 259, 1246
Fnu4HI GCNGC 3 cut(s) 137, 776, 1118
FokI GGATG 6 cut(s) 167, 620, 843, 995, 1061, 1357
FriOI GRGCYC 1 cut(s) 1497
Fsp4HI GCNGC 3 cut(s) 137, 776, 1118
FspBI CTAG 8 cut(s) 63, 227, 312, 689, 942, 1040, 1466, 1520
GlaI GCGC 1 cut(s) 488
GluI GCNGC 3 cut(s) 137, 776, 1118
GsuI CTGGAG 2 cut(s) 1361, 1481
HaeIII GGCC 1 cut(s) 1380
HapII CCGG 1 cut(s) 191
HhaI GCGC 1 cut(s) 489
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HindIII AAGCTT 2 cut(s) 1151, 1821
HinfI GANTC 5 cut(s) 223, 507, 716, 1505, 1723
HpaII CCGG 1 cut(s) 191
HphI GGTGA 7 cut(s) 82, 253, 719, 786, 1062, 1306, 1357
Hpy166II GTNNAC 3 cut(s) 260, 1247, 1288
Hpy188I TCNGA 4 cut(s) 214, 1492, 1597, 1695
Hpy188III TCNNGA 6 cut(s) 365, 452, 744, 860, 1498, 1727
Hpy8I GTNNAC 3 cut(s) 260, 1247, 1288
Hpy99I CGWCG 1 cut(s) 1254
HpyAV CCTTC 7 cut(s) 344, 497, 533, 842, 892, 1411, 1592
HpyCH4III ACNGT 2 cut(s) 1660, 1753
HpyCH4IV ACGT 2 cut(s) 1102, 1447
HpyCH4V TGCA 8 cut(s) 110, 116, 380, 582, 920, 1327, 1615, 1673
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 142, 386, 484, 1117
HpyF3I CTNAG 8 cut(s) 392, 453, 647, 1154, 1228, 1307, 1475, 1491
HpySE526I ACGT 2 cut(s) 1102, 1447
HspAI GCGC 1 cut(s) 487
Ksp22I TGATCA 2 cut(s) 361, 1239
LmnI GCTCC 3 cut(s) 120, 820, 1500
Lsp1109I GCAGC 2 cut(s) 787, 1104
LweI GCATC 6 cut(s) 63, 103, 474, 642, 1533, 1699
MaeI CTAG 8 cut(s) 63, 227, 312, 689, 942, 1040, 1466, 1520
MaeII ACGT 2 cut(s) 1102, 1447
MaeIII GTNAC 5 cut(s) 26, 241, 1335, 1434, 1771
MfeI CAATTG 1 cut(s) 479
MflI RGATCY 3 cut(s) 907, 926, 954
MhlI GDGCHC 2 cut(s) 125, 1497
MmeI TCCRAC 3 cut(s) 237, 1417, 1626
MroXI GAANNNNTTC 3 cut(s) 171, 684, 1602
MseI TTAA 9 cut(s) 419, 573, 621, 758, 876, 996, 1637, 1755, 1864
MslI CAYNNNNRTG 3 cut(s) 111, 1446, 1570
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 4 cut(s) 164, 191, 192, 298
MunI CAATTG 1 cut(s) 479
Mva1269I GAATGC 1 cut(s) 147
MvaI CCWGG 2 cut(s) 164, 298
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 5 cut(s) 107, 142, 386, 484, 1117
NciI CCSGG 2 cut(s) 191, 192
NcoI CCATGG 1 cut(s) 1374
NdeI CATATG 1 cut(s) 811
NlaIV GGNNCC 5 cut(s) 51, 353, 928, 956, 1559
NmuCI GTSAC 2 cut(s) 241, 1335
NspI RCATGY 2 cut(s) 110, 920
PaeI GCATGC 1 cut(s) 920
PctI GAATGC 1 cut(s) 147
PdmI GAANNNNTTC 3 cut(s) 171, 684, 1602
PfeI GAWTC 5 cut(s) 223, 507, 716, 1505, 1723
PflMI CCANNNNNTGG 1 cut(s) 1022
PfoI TCCNGGA 1 cut(s) 296
PkrI GCNGC 3 cut(s) 138, 777, 1119
Ppu21I YACGTR 1 cut(s) 1448
PshBI ATTAAT 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 1497
Psp1406I AACGTT 1 cut(s) 1102
Psp6I CCWGG 2 cut(s) 162, 296
PspGI CCWGG 2 cut(s) 162, 296
PspN4I GGNNCC 5 cut(s) 51, 353, 928, 956, 1559
PspPI GGNCC 2 cut(s) 49, 1378
PsrI GAACNNNNNNTAC 4 cut(s) 1550, 1582, 1772, 1804
PsuI RGATCY 3 cut(s) 907, 926, 954
RsaI GTAC 2 cut(s) 1446, 1781
RsaNI GTAC 2 cut(s) 1445, 1780
RseI CAYNNNNRTG 3 cut(s) 111, 1446, 1570
SacI GAGCTC 1 cut(s) 1497
SaqAI TTAA 9 cut(s) 419, 573, 621, 758, 876, 996, 1637, 1755, 1864
SatI GCNGC 3 cut(s) 137, 776, 1118
Sau96I GGNCC 2 cut(s) 49, 1378
ScrFI CCNGG 4 cut(s) 164, 191, 192, 298
SduI GDGCHC 2 cut(s) 125, 1497
SfaNI GCATC 6 cut(s) 63, 103, 474, 642, 1533, 1699
SfcI CTRYAG 1 cut(s) 948
SinI GGWCC 1 cut(s) 49
SmaI CCCGGG 1 cut(s) 192
SmiMI CAYNNNNRTG 3 cut(s) 111, 1446, 1570
SmlI CTYRAG 2 cut(s) 1168, 1685
SmoI CTYRAG 2 cut(s) 1168, 1685
SpeI ACTAGT 1 cut(s) 62
SphI GCATGC 1 cut(s) 920
SsiI CCGC 4 cut(s) 137, 252, 847, 1457
SspMI CTAG 8 cut(s) 63, 227, 312, 689, 942, 1040, 1466, 1520
SstI GAGCTC 1 cut(s) 1497
StyD4I CCNGG 4 cut(s) 162, 189, 190, 296
StyI CCWWGG 2 cut(s) 264, 1374
TaaI ACNGT 2 cut(s) 1660, 1753
TaiI ACGT 2 cut(s) 1105, 1450
TaqI TCGA 5 cut(s) 671, 745, 1019, 1508, 1745
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 5 cut(s) 223, 507, 716, 1505, 1723
Tru1I TTAA 9 cut(s) 419, 573, 621, 758, 876, 996, 1637, 1755, 1864
Tru9I TTAA 9 cut(s) 419, 573, 621, 758, 876, 996, 1637, 1755, 1864
TscAI CASTG 3 cut(s) 1053, 1344, 1665
TseFI GTSAC 2 cut(s) 241, 1335
TseI GCWGC 2 cut(s) 775, 1117
Tsp45I GTSAC 2 cut(s) 241, 1335
TspDTI ATGAA 7 cut(s) 171, 320, 824, 1112, 1364, 1371, 1694
TspGWI ACGGA 2 cut(s) 655, 1236
TspMI CCCGGG 1 cut(s) 190
TspRI CASTG 3 cut(s) 1053, 1344, 1665
Van91I CCANNNNNTGG 1 cut(s) 1022
VpaK11BI GGWCC 1 cut(s) 49
VspI ATTAAT 1 cut(s) 573
XapI RAATTY 6 cut(s) 8, 682, 693, 760, 863, 1451
XceI RCATGY 2 cut(s) 110, 920
XmaI CCCGGG 1 cut(s) 190
XmiI GTMKAC 2 cut(s) 259, 1246
XmnI GAANNNNTTC 3 cut(s) 171, 684, 1602
XspI CTAG 8 cut(s) 63, 227, 312, 689, 942, 1040, 1466, 1520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.