Rmu_sc0004199.1_g000046

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004199.1
Physical Location & Seq
Reverse (-)
257188 .. 257568
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004199.1_g000046.1.cds

Sequence Viewer

Length: 381 bp
atggcggaatatgctgtttcgactgctgtgagaatgctcacaacttggttgattgaagaagcagttctgttgaaaggtgtgagtgagaaagttcaacatctcaaagacacactgagttggatgcaaggtttcctcaaggatgctgattccgtgcaaaagagatcagaaagatttcaggcttggatgtcacaaataagagaagtggcattcgatgctgaagtggcaatagaaacttacatcagcgaggcagcagcacgaagttcatggagaaaagtcctgaagccaattcatcttttcaaaatccgaagaaaaatcgaaaaatcgaaaagatccaggccaggaaggagcacatctccaaacaaaaggaaagtttcggcataa

Protein Analysis

126

Amino Acids

14.54

Weight (kDa)

10.27

Isoelectric Point (pI)

67.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 324
AcuI CTGAAG 2 cut(s) 237, 299
AgsI TTSAA 4 cut(s) 56, 73, 95, 298
AjnI CCWGG 2 cut(s) 332, 337
Alw21I GWGCWC 1 cut(s) 350
AlwI GGATC 1 cut(s) 324
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 248, 251
Asp700I GAANNNNTTC 2 cut(s) 63, 171
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 260, 263
BciT130I CCWGG 2 cut(s) 334, 339
BisI GCNGC 2 cut(s) 249, 252
BlsI GCNGC 2 cut(s) 250, 253
Bme1390I CCNGG 2 cut(s) 334, 339
BmrFI CCNGG 2 cut(s) 334, 339
BmsI GCATC 3 cut(s) 111, 130, 202
BplI GAGNNNNNCTC 2 cut(s) 337, 369
BpuEI CTTGAG 1 cut(s) 119
BseBI CCWGG 2 cut(s) 334, 339
BseGI GGATG 3 cut(s) 126, 145, 189
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 260, 263
BshFI GGCC 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 350
BsmI GAATGC 2 cut(s) 39, 206
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 161, 329
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 105
BspPI GGATC 1 cut(s) 324
BssMI GATC 2 cut(s) 161, 329
Bst2UI CCWGG 2 cut(s) 334, 339
BstAPI GCANNNNNTGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 3 cut(s) 126, 145, 189
BstKTI GATC 2 cut(s) 164, 332
BstMBI GATC 2 cut(s) 161, 329
BstMWI GCNNNNNNNGC 3 cut(s) 11, 212, 221
BstNI CCWGG 2 cut(s) 334, 339
BstSCI CCNGG 2 cut(s) 332, 337
BstV1I GCAGC 2 cut(s) 260, 263
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuRI GGCC 1 cut(s) 337
BtsCI GGATG 3 cut(s) 126, 145, 189
BtsIMutI CAGTG 1 cut(s) 110
CviAII CATG 1 cut(s) 264
CviJI RGCY 3 cut(s) 179, 283, 337
CviKI_1 RGCY 3 cut(s) 179, 283, 337
DdeI CTNAG 1 cut(s) 113
DpnI GATC 2 cut(s) 163, 331
DpnII GATC 2 cut(s) 161, 329
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 237, 299
EcoRII CCWGG 2 cut(s) 332, 337
FaeI CATG 1 cut(s) 267
FaiI YATR 3 cut(s) 12, 265, 379
FatI CATG 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 249, 252
FokI GGATG 3 cut(s) 133, 152, 196
Fsp4HI GCNGC 2 cut(s) 249, 252
GluI GCNGC 2 cut(s) 249, 252
HaeIII GGCC 1 cut(s) 337
Hin1II CATG 1 cut(s) 267
HinfI GANTC 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 166, 305
Hpy188III TCNNGA 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 124, 154
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 212, 221
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 1 cut(s) 267
Kzo9I GATC 2 cut(s) 161, 329
LmnI GCTCC 1 cut(s) 345
LpnPI CCDG 6 cut(s) 161, 290, 319, 324, 346, 351
Lsp1109I GCAGC 2 cut(s) 260, 263
LweI GCATC 3 cut(s) 111, 130, 202
MaeIII GTNAC 1 cut(s) 186
MalI GATC 2 cut(s) 163, 331
MboI GATC 2 cut(s) 161, 329
MboII GAAGA 2 cut(s) 68, 318
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 2 cut(s) 143, 238
MroXI GAANNNNTTC 2 cut(s) 63, 171
MspR9I CCNGG 2 cut(s) 334, 339
Mva1269I GAATGC 2 cut(s) 39, 206
MvaI CCWGG 2 cut(s) 334, 339
MwoI GCNNNNNNNGC 3 cut(s) 11, 212, 221
NdeII GATC 2 cut(s) 161, 329
NlaIII CATG 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 186
PctI GAATGC 2 cut(s) 39, 206
PdmI GAANNNNTTC 2 cut(s) 63, 171
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 2 cut(s) 250, 253
Psp6I CCWGG 2 cut(s) 332, 337
PspGI CCWGG 2 cut(s) 332, 337
PsuI RGATCY 1 cut(s) 329
SatI GCNGC 2 cut(s) 249, 252
Sau3AI GATC 2 cut(s) 161, 329
ScrFI CCNGG 2 cut(s) 334, 339
SduI GDGCHC 1 cut(s) 350
SetI ASST 2 cut(s) 79, 130
SfaNI GCATC 3 cut(s) 111, 130, 202
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 285
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 332, 337
TaqI TCGA 4 cut(s) 20, 210, 315, 323
TasI AATT 1 cut(s) 285
TfiI GAWTC 1 cut(s) 146
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 2 cut(s) 248, 251
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 2 cut(s) 252, 278
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 1 cut(s) 117
XmnI GAANNNNTTC 2 cut(s) 63, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.