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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1286 |
| AccII | CGCG | 1 cut(s) | 467 |
| AciI | CCGC | 3 cut(s) | 465, 1181, 1191 |
| AclWI | GGATC | 1 cut(s) | 1191 |
| AcsI | RAATTY | 3 cut(s) | 563, 674, 950 |
| AcuI | CTGAAG | 3 cut(s) | 7, 50, 1787 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1085, 1488 |
| AgsI | TTSAA | 9 cut(s) | 550, 600, 752, 826, 1073, 1420, 1526, 1763, 1899 |
| AjnI | CCWGG | 3 cut(s) | 558, 637, 770 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 996, 1028, 1053, 1085 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 134, 166 |
| AluBI | AGCT | 9 cut(s) | 6, 21, 27, 215, 438, 1057, 1310, 1613, 1886 |
| AluI | AGCT | 9 cut(s) | 6, 21, 27, 215, 438, 1057, 1310, 1613, 1886 |
| Alw21I | GWGCWC | 1 cut(s) | 1391 |
| Alw26I | GTCTC | 1 cut(s) | 1725 |
| AlwI | GGATC | 1 cut(s) | 1191 |
| AoxI | GGCC | 3 cut(s) | 228, 540, 1906 |
| ApeKI | GCWGC | 4 cut(s) | 6, 244, 803, 806 |
| ApoI | RAATTY | 3 cut(s) | 563, 674, 950 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1419, 1451 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 424, 661 |
| AspLEI | GCGC | 1 cut(s) | 1287 |
| AspS9I | GGNCC | 3 cut(s) | 710, 1163, 1771 |
| AsuC2I | CCSGG | 2 cut(s) | 631, 1029 |
| AsuHPI | GGTGA | 2 cut(s) | 565, 1717 |
| AsuII | TTCGAA | 1 cut(s) | 1438 |
| AvaII | GGWCC | 3 cut(s) | 710, 1163, 1771 |
| AxyI | CCTNAGG | 1 cut(s) | 1080 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 609, 642 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1100, 1132 |
| BauI | CACGAG | 1 cut(s) | 688 |
| BbsI | GAAGAC | 1 cut(s) | 1520 |
| Bbv12I | GWGCWC | 1 cut(s) | 1391 |
| BbvI | GCAGC | 3 cut(s) | 231, 790, 793 |
| BccI | CCATC | 6 cut(s) | 122, 197, 293, 321, 984, 1079 |
| BceAI | ACGGC | 1 cut(s) | 145 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1444, 1478 |
| BciT130I | CCWGG | 3 cut(s) | 560, 639, 772 |
| BciVI | GTATCC | 1 cut(s) | 435 |
| BclI | TGATCA | 1 cut(s) | 379 |
| BcnI | CCSGG | 2 cut(s) | 631, 1029 |
| BcoDI | GTCTC | 1 cut(s) | 1725 |
| BfaI | CTAG | 3 cut(s) | 363, 585, 1575 |
| BfuI | GTATCC | 1 cut(s) | 435 |
| BisI | GCNGC | 6 cut(s) | 7, 245, 465, 804, 807, 1192 |
| BlsI | GCNGC | 6 cut(s) | 8, 246, 466, 805, 808, 1193 |
| BmcAI | AGTACT | 1 cut(s) | 898 |
| Bme1390I | CCNGG | 5 cut(s) | 560, 631, 639, 772, 1029 |
| Bme18I | GGWCC | 3 cut(s) | 710, 1163, 1771 |
| BmgT120I | GGNCC | 3 cut(s) | 710, 1163, 1771 |
| BmiI | GGNNCC | 3 cut(s) | 880, 1164, 1773 |
| BmrFI | CCNGG | 5 cut(s) | 560, 631, 639, 772, 1029 |
| BmsI | GCATC | 7 cut(s) | 141, 180, 318, 1073, 1212, 1272, 1724 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1050 |
| BpiI | GAAGAC | 1 cut(s) | 1520 |
| BpmI | CTGGAG | 2 cut(s) | 1572, 1629 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1841 |
| Bpu14I | TTCGAA | 1 cut(s) | 1438 |
| BpuEI | CTTGAG | 1 cut(s) | 1296 |
| BpuMI | CCSGG | 2 cut(s) | 631, 1029 |
| BsaAI | YACGTR | 1 cut(s) | 608 |
| BsaJI | CCNNGG | 1 cut(s) | 965 |
| BsaWI | WCCGGW | 1 cut(s) | 163 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 119, 134, 149, 164 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1085, 1488 |
| Bse1I | ACTGG | 3 cut(s) | 914, 1417, 1612 |
| Bse21I | CCTNAGG | 1 cut(s) | 1080 |
| Bse3DI | GCAATG | 1 cut(s) | 1244 |
| BseBI | CCWGG | 3 cut(s) | 560, 639, 772 |
| BseDI | CCNNGG | 1 cut(s) | 965 |
| BseGI | GGATG | 9 cut(s) | 327, 352, 382, 999, 1064, 1090, 1378, 1555, 1700 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1085, 1488 |
| BseMI | GCAATG | 1 cut(s) | 1244 |
| BseMII | CTCAG | 4 cut(s) | 266, 854, 1510, 1877 |
| BseNI | ACTGG | 3 cut(s) | 914, 1417, 1612 |
| BseRI | GAGGAG | 1 cut(s) | 319 |
| BseXI | GCAGC | 3 cut(s) | 231, 790, 793 |
| BseYI | CCCAGC | 1 cut(s) | 10 |
| BsgI | GTGCAG | 1 cut(s) | 72 |
| Bsh1236I | CGCG | 1 cut(s) | 467 |
| BshFI | GGCC | 3 cut(s) | 230, 542, 1908 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1391 |
| BsiSI | CCGG | 3 cut(s) | 164, 630, 1028 |
| BslFI | GGGAC | 2 cut(s) | 193, 1459 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1085, 1488 |
| BsmAI | GTCTC | 1 cut(s) | 1725 |
| BsmBI | CGTCTC | 1 cut(s) | 1725 |
| BsmFI | GGGAC | 2 cut(s) | 193, 1459 |
| BsmI | GAATGC | 1 cut(s) | 1467 |
| BsnI | GGCC | 3 cut(s) | 230, 542, 1908 |
| Bsp119I | TTCGAA | 1 cut(s) | 1438 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1391 |
| Bsp1407I | TGTACA | 4 cut(s) | 762, 1107, 1347, 1562 |
| Bsp143I | GATC | 6 cut(s) | 379, 610, 784, 988, 1183, 1400 |
| BspACI | CCGC | 3 cut(s) | 465, 1181, 1191 |
| BspANI | GGCC | 3 cut(s) | 230, 542, 1908 |
| BspCNI | CTCAG | 4 cut(s) | 267, 855, 1509, 1876 |
| BspFNI | CGCG | 1 cut(s) | 467 |
| BspHI | TCATGA | 1 cut(s) | 1015 |
| BspLI | GGNNCC | 3 cut(s) | 880, 1164, 1773 |
| BspPI | GGATC | 1 cut(s) | 1191 |
| BspT104I | TTCGAA | 1 cut(s) | 1438 |
| BsrDI | GCAATG | 1 cut(s) | 1244 |
| BsrGI | TGTACA | 4 cut(s) | 762, 1107, 1347, 1562 |
| BsrI | ACTGG | 3 cut(s) | 914, 1417, 1612 |
| BssECI | CCNNGG | 1 cut(s) | 965 |
| BssMI | GATC | 6 cut(s) | 379, 610, 784, 988, 1183, 1400 |
| BssSI | CACGAG | 1 cut(s) | 688 |
| Bst2BI | CACGAG | 1 cut(s) | 688 |
| Bst2UI | CCWGG | 3 cut(s) | 560, 639, 772 |
| Bst4CI | ACNGT | 6 cut(s) | 44, 207, 1319, 1450, 1519, 1543 |
| Bst6I | CTCTTC | 2 cut(s) | 101, 452 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 87, 527 |
| BstAUI | TGTACA | 4 cut(s) | 762, 1107, 1347, 1562 |
| BstBAI | YACGTR | 1 cut(s) | 608 |
| BstBI | TTCGAA | 1 cut(s) | 1438 |
| BstC8I | GCNNGC | 3 cut(s) | 88, 436, 1691 |
| BstDEI | CTNAG | 8 cut(s) | 275, 863, 992, 1080, 1496, 1811, 1841, 1863 |
| BstDSI | CCRYGG | 1 cut(s) | 965 |
| BstEII | GGTNACC | 1 cut(s) | 625 |
| BstF5I | GGATG | 9 cut(s) | 327, 352, 382, 999, 1064, 1090, 1378, 1555, 1700 |
| BstFNI | CGCG | 1 cut(s) | 467 |
| BstHHI | GCGC | 1 cut(s) | 1287 |
| BstKTI | GATC | 6 cut(s) | 382, 613, 787, 991, 1186, 1403 |
| BstMAI | GTCTC | 1 cut(s) | 1725 |
| BstMBI | GATC | 6 cut(s) | 379, 610, 784, 988, 1183, 1400 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 87, 241, 527, 1200, 1284 |
| BstNI | CCWGG | 3 cut(s) | 560, 639, 772 |
| BstNSI | RCATGY | 1 cut(s) | 592 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1050 |
| BstPI | GGTNACC | 1 cut(s) | 625 |
| BstSCI | CCNGG | 5 cut(s) | 558, 629, 637, 770, 1027 |
| BstUI | CGCG | 1 cut(s) | 467 |
| BstV1I | GCAGC | 3 cut(s) | 231, 790, 793 |
| BstV2I | GAAGAC | 1 cut(s) | 1520 |
| BstX2I | RGATCY | 1 cut(s) | 1183 |
| BstYI | RGATCY | 1 cut(s) | 1183 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1080 |
| BsuI | GTATCC | 1 cut(s) | 435 |
| BsuRI | GGCC | 3 cut(s) | 230, 542, 1908 |
| BtgI | CCRYGG | 1 cut(s) | 965 |
| BtsCI | GGATG | 9 cut(s) | 327, 352, 382, 999, 1064, 1090, 1378, 1555, 1700 |
| BtsIMutI | CAGTG | 5 cut(s) | 40, 780, 1410, 1539, 1605 |
| Cac8I | GCNNGC | 3 cut(s) | 88, 436, 1691 |
| CciI | TCATGA | 1 cut(s) | 1015 |
| CfoI | GCGC | 1 cut(s) | 1287 |
| Cfr13I | GGNCC | 3 cut(s) | 710, 1163, 1771 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 29, 64 |
| CviAII | CATG | 4 cut(s) | 589, 986, 1016, 1353 |
| DdeI | CTNAG | 8 cut(s) | 275, 863, 992, 1080, 1496, 1811, 1841, 1863 |
| DpnI | GATC | 6 cut(s) | 381, 612, 786, 990, 1185, 1402 |
| DpnII | GATC | 6 cut(s) | 379, 610, 784, 988, 1183, 1400 |
| Eam1104I | CTCTTC | 2 cut(s) | 101, 452 |
| EarI | CTCTTC | 2 cut(s) | 101, 452 |
| Eco32I | GATATC | 1 cut(s) | 1738 |
| Eco47I | GGWCC | 3 cut(s) | 710, 1163, 1771 |
| Eco57I | CTGAAG | 3 cut(s) | 7, 50, 1787 |
| Eco81I | CCTNAGG | 1 cut(s) | 1080 |
| Eco91I | GGTNACC | 1 cut(s) | 625 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1163, 1771 |
| EcoO65I | GGTNACC | 1 cut(s) | 625 |
| EcoRII | CCWGG | 3 cut(s) | 558, 637, 770 |
| EcoRV | GATATC | 1 cut(s) | 1738 |
| Esp3I | CGTCTC | 1 cut(s) | 1725 |
| FaeI | CATG | 4 cut(s) | 592, 989, 1019, 1356 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1053, 1085 |
| FaqI | GGGAC | 2 cut(s) | 193, 1459 |
| FatI | CATG | 4 cut(s) | 588, 985, 1015, 1352 |
| FbaI | TGATCA | 1 cut(s) | 379 |
| Fnu4HI | GCNGC | 6 cut(s) | 7, 245, 465, 804, 807, 1192 |
| FokI | GGATG | 9 cut(s) | 334, 359, 389, 986, 1051, 1097, 1385, 1562, 1687 |
| Fsp4HI | GCNGC | 6 cut(s) | 7, 245, 465, 804, 807, 1192 |
| FspAI | RTGCGCAY | 1 cut(s) | 1286 |
| FspBI | CTAG | 3 cut(s) | 363, 585, 1575 |
| FspI | TGCGCA | 1 cut(s) | 1286 |
| GlaI | GCGC | 1 cut(s) | 1286 |
| GluI | GCNGC | 6 cut(s) | 7, 245, 465, 804, 807, 1192 |
| GsaI | CCCAGC | 1 cut(s) | 14 |
| GsuI | CTGGAG | 2 cut(s) | 1572, 1629 |
| HaeIII | GGCC | 3 cut(s) | 230, 542, 1908 |
| HapII | CCGG | 3 cut(s) | 164, 630, 1028 |
| HhaI | GCGC | 1 cut(s) | 1287 |
| Hin1II | CATG | 4 cut(s) | 592, 989, 1019, 1356 |
| Hin6I | GCGC | 1 cut(s) | 1285 |
| HinP1I | GCGC | 1 cut(s) | 1285 |
| HincII | GTYRAC | 2 cut(s) | 282, 743 |
| HindII | GTYRAC | 2 cut(s) | 282, 743 |
| HinfI | GANTC | 6 cut(s) | 185, 634, 841, 1640, 1697, 1807 |
| HpaII | CCGG | 3 cut(s) | 164, 630, 1028 |
| HphI | GGTGA | 2 cut(s) | 565, 1717 |
| Hpy166II | GTNNAC | 9 cut(s) | 201, 282, 710, 743, 780, 1350, 1502, 1537, 1582 |
| Hpy188III | TCNNGA | 7 cut(s) | 319, 752, 1016, 1313, 1526, 1569, 1589 |
| Hpy8I | GTNNAC | 9 cut(s) | 201, 282, 710, 743, 780, 1350, 1502, 1537, 1582 |
| HpyAV | CCTTC | 6 cut(s) | 651, 1079, 1238, 1762, 1764, 1898 |
| HpyCH4III | ACNGT | 6 cut(s) | 44, 207, 1319, 1450, 1519, 1543 |
| HpyCH4IV | ACGT | 2 cut(s) | 607, 1913 |
| HpyCH4V | TGCA | 9 cut(s) | 53, 530, 732, 1203, 1237, 1362, 1410, 1465, 1633 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 87, 241, 527, 1200, 1284 |
| HpyF3I | CTNAG | 8 cut(s) | 275, 863, 992, 1080, 1496, 1811, 1841, 1863 |
| HpySE526I | ACGT | 2 cut(s) | 607, 1913 |
| Hsp92II | CATG | 4 cut(s) | 592, 989, 1019, 1356 |
| HspAI | GCGC | 1 cut(s) | 1285 |
| Ksp22I | TGATCA | 1 cut(s) | 379 |
| Kzo9I | GATC | 6 cut(s) | 379, 610, 784, 988, 1183, 1400 |
| LmnI | GCTCC | 3 cut(s) | 306, 1062, 1610 |
| Lsp1109I | GCAGC | 3 cut(s) | 231, 790, 793 |
| LweI | GCATC | 7 cut(s) | 141, 180, 318, 1073, 1212, 1272, 1724 |
| MaeI | CTAG | 3 cut(s) | 363, 585, 1575 |
| MaeII | ACGT | 2 cut(s) | 607, 1913 |
| MaeIII | GTNAC | 3 cut(s) | 625, 916, 1043 |
| MalI | GATC | 6 cut(s) | 381, 612, 786, 990, 1185, 1402 |
| MboI | GATC | 6 cut(s) | 379, 610, 784, 988, 1183, 1400 |
| MfeI | CAATTG | 1 cut(s) | 1209 |
| MflI | RGATCY | 1 cut(s) | 1183 |
| MhlI | GDGCHC | 1 cut(s) | 1391 |
| MlyI | GAGTC | 1 cut(s) | 850 |
| MmeI | TCCRAC | 2 cut(s) | 793, 1027 |
| MroXI | GAANNNNTTC | 2 cut(s) | 424, 661 |
| MseI | TTAA | 3 cut(s) | 393, 567, 1095 |
| MslI | CAYNNNNRTG | 1 cut(s) | 984 |
| MspI | CCGG | 3 cut(s) | 164, 630, 1028 |
| MspR9I | CCNGG | 5 cut(s) | 560, 631, 639, 772, 1029 |
| MunI | CAATTG | 1 cut(s) | 1209 |
| Mva1269I | GAATGC | 1 cut(s) | 1467 |
| MvaI | CCWGG | 3 cut(s) | 560, 639, 772 |
| MvnI | CGCG | 1 cut(s) | 467 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 87, 241, 527, 1200, 1284 |
| NciI | CCSGG | 2 cut(s) | 631, 1029 |
| NdeII | GATC | 6 cut(s) | 379, 610, 784, 988, 1183, 1400 |
| NlaIII | CATG | 4 cut(s) | 592, 989, 1019, 1356 |
| NlaIV | GGNNCC | 3 cut(s) | 880, 1164, 1773 |
| NmuCI | GTSAC | 1 cut(s) | 1043 |
| NsbI | TGCGCA | 1 cut(s) | 1286 |
| NspI | RCATGY | 1 cut(s) | 592 |
| NspV | TTCGAA | 1 cut(s) | 1438 |
| PagI | TCATGA | 1 cut(s) | 1015 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 135 |
| PctI | GAATGC | 1 cut(s) | 1467 |
| PdmI | GAANNNNTTC | 2 cut(s) | 424, 661 |
| PfeI | GAWTC | 5 cut(s) | 185, 634, 1640, 1697, 1807 |
| PkrI | GCNGC | 6 cut(s) | 8, 246, 466, 805, 808, 1193 |
| PleI | GAGTC | 1 cut(s) | 849 |
| PpsI | GAGTC | 1 cut(s) | 849 |
| Ppu21I | YACGTR | 1 cut(s) | 608 |
| PpuMI | RGGWCCY | 2 cut(s) | 1163, 1771 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1050 |
| Psp5II | RGGWCCY | 2 cut(s) | 1163, 1771 |
| Psp6I | CCWGG | 3 cut(s) | 558, 637, 770 |
| PspEI | GGTNACC | 1 cut(s) | 625 |
| PspFI | CCCAGC | 1 cut(s) | 10 |
| PspGI | CCWGG | 3 cut(s) | 558, 637, 770 |
| PspN4I | GGNNCC | 3 cut(s) | 880, 1164, 1773 |
| PspPI | GGNCC | 3 cut(s) | 710, 1163, 1771 |
| PspPPI | RGGWCCY | 2 cut(s) | 1163, 1771 |
| PsuI | RGATCY | 1 cut(s) | 1183 |
| RseI | CAYNNNNRTG | 1 cut(s) | 984 |
| SaqAI | TTAA | 3 cut(s) | 393, 567, 1095 |
| SatI | GCNGC | 6 cut(s) | 7, 245, 465, 804, 807, 1192 |
| Sau3AI | GATC | 6 cut(s) | 379, 610, 784, 988, 1183, 1400 |
| Sau96I | GGNCC | 3 cut(s) | 710, 1163, 1771 |
| ScaI | AGTACT | 1 cut(s) | 898 |
| SchI | GAGTC | 1 cut(s) | 850 |
| ScrFI | CCNGG | 5 cut(s) | 560, 631, 639, 772, 1029 |
| SduI | GDGCHC | 1 cut(s) | 1391 |
| SfaNI | GCATC | 7 cut(s) | 141, 180, 318, 1073, 1212, 1272, 1724 |
| SfuI | TTCGAA | 1 cut(s) | 1438 |
| SinI | GGWCC | 3 cut(s) | 710, 1163, 1771 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 984 |
| SmlI | CTYRAG | 1 cut(s) | 1311 |
| SmoI | CTYRAG | 1 cut(s) | 1311 |
| SsiI | CCGC | 3 cut(s) | 465, 1181, 1191 |
| SspI | AATATT | 1 cut(s) | 1156 |
| SspMI | CTAG | 3 cut(s) | 363, 585, 1575 |
| StyD4I | CCNGG | 5 cut(s) | 558, 629, 637, 770, 1027 |
| TaaI | ACNGT | 6 cut(s) | 44, 207, 1319, 1450, 1519, 1543 |
| TaiI | ACGT | 2 cut(s) | 610, 1916 |
| TaqI | TCGA | 4 cut(s) | 183, 428, 501, 1438 |
| TaqII | GACCGA | 1 cut(s) | 1444 |
| TatI | WGTACW | 7 cut(s) | 762, 896, 1107, 1347, 1562, 1827, 1834 |
| TauI | GCSGC | 2 cut(s) | 467, 1194 |
| TfiI | GAWTC | 5 cut(s) | 185, 634, 1640, 1697, 1807 |
| Tru1I | TTAA | 3 cut(s) | 393, 567, 1095 |
| Tru9I | TTAA | 3 cut(s) | 393, 567, 1095 |
| TscAI | CASTG | 5 cut(s) | 47, 787, 1417, 1546, 1612 |
| TseFI | GTSAC | 1 cut(s) | 1043 |
| TseI | GCWGC | 4 cut(s) | 6, 244, 803, 806 |
| Tsp45I | GTSAC | 1 cut(s) | 1043 |
| TspDTI | ATGAA | 7 cut(s) | 439, 634, 1004, 1023, 1284, 1587, 1689 |
| TspGWI | ACGGA | 2 cut(s) | 415, 982 |
| TspRI | CASTG | 5 cut(s) | 47, 787, 1417, 1546, 1612 |
| VpaK11BI | GGWCC | 3 cut(s) | 710, 1163, 1771 |
| XapI | RAATTY | 3 cut(s) | 563, 674, 950 |
| XceI | RCATGY | 1 cut(s) | 592 |
| XmnI | GAANNNNTTC | 2 cut(s) | 424, 661 |
| XspI | CTAG | 3 cut(s) | 363, 585, 1575 |
| ZrmI | AGTACT | 1 cut(s) | 898 |