Rmu_sc0014992.1_g000009

Belongs to the glutamine synthetase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014992.1
Physical Location & Seq
Reverse (-)
37747 .. 39443
1697 bp
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UTR
Exon/CDS
Intron
Rmu_sc0014992.1_g000009.1.cds

Sequence Viewer

Length: 627 bp
atggagaggcagcgtaaagaggaagaagtcaaaactcaatcctcgagaaaaggaaaagaggcagagcaatcagtaatgaacagggcaagtagtcctcaaacagggggtcagcaatctagtggaaccttgaaatcgttgaaggataaatttagcaaggaggagaaagaagtcccagaagcatctggtttgaagaccctgaaatctcctagaaagcctgttcacatatcaaataaaagttttatcgactatattttcactcgtagttcggaggttgctctactttttgacttgccaatgcagatacatacaggttttggcgacaaagatttggacttgaggctatgcaatccccttcatctctgggctgtgcttgaggccaagagattttctaaaagctgcattgttcttttacatgcatcctacccgttttcaaaggaagcatcatatctagcctctgtttatccccaggtcattgaggatgataagcgttttcacatacaggtctacctcgactttggcttggctatacccaagctcagtgtccaagggatggtatcttcactaaaagaacttttggagcttgctccaattaagaaggtaacagtatatctggttttcagttgttag

Protein Analysis

208

Amino Acids

23.5

Weight (kDa)

9.12

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 550
AccI GTMKAC 1 cut(s) 504
AcsI RAATTY 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 101, 550
AgsI TTSAA 4 cut(s) 130, 139, 190, 432
AjnI CCWGG 1 cut(s) 465
AluBI AGCT 3 cut(s) 396, 535, 580
AluI AGCT 3 cut(s) 396, 535, 580
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 2 cut(s) 10, 396
ApoI RAATTY 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
AvaI CYCGRG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 22, 383
BccI CCATC 1 cut(s) 544
BciT130I CCWGG 1 cut(s) 467
BfaI CTAG 3 cut(s) 117, 207, 449
BisI GCNGC 2 cut(s) 11, 397
BlsI GCNGC 2 cut(s) 12, 398
Bme1390I CCNGG 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 467
BmsI GCATC 3 cut(s) 188, 425, 449
BpiI GAAGAC 1 cut(s) 197
BpuEI CTTGAG 2 cut(s) 355, 392
BsaJI CCNNGG 2 cut(s) 465, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 550
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 2 cut(s) 465, 544
BseGI GGATG 3 cut(s) 416, 484, 555
BseLI CCNNNNNNNGG 2 cut(s) 101, 550
BseMII CTCAG 1 cut(s) 550
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 22, 383
BshFI GGCC 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 101, 550
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 377
BsoBI CYCGRG 1 cut(s) 43
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 465, 544
BssT1I CCWWGG 1 cut(s) 544
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 1 cut(s) 604
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 1 cut(s) 536
BstENI CCTNNNNNAGG 1 cut(s) 99
BstF5I GGATG 3 cut(s) 416, 484, 555
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 22, 383
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 3 cut(s) 416, 484, 555
BtsIMutI CAGTG 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 582
CviAII CATG 1 cut(s) 413
DdeI CTNAG 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 544
FaeI CATG 1 cut(s) 416
FaiI YATR 9 cut(s) 224, 249, 306, 343, 414, 445, 497, 527, 607
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 412
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 2 cut(s) 11, 397
FokI GGATG 3 cut(s) 403, 491, 562
Fsp4HI GCNGC 2 cut(s) 11, 397
FspBI CTAG 3 cut(s) 117, 207, 449
GluI GCNGC 2 cut(s) 11, 397
HaeIII GGCC 1 cut(s) 377
Hin1II CATG 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 220, 505
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 2 cut(s) 220, 505
HpyAV CCTTC 3 cut(s) 133, 362, 589
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4V TGCA 4 cut(s) 298, 345, 399, 416
HpyF3I CTNAG 1 cut(s) 536
Hsp92II CATG 1 cut(s) 416
LmnI GCTCC 2 cut(s) 577, 589
Lsp1109I GCAGC 2 cut(s) 22, 383
LweI GCATC 3 cut(s) 188, 425, 449
MaeI CTAG 3 cut(s) 117, 207, 449
MaeIII GTNAC 1 cut(s) 598
MboII GAAGA 3 cut(s) 35, 202, 549
MluCI AATT 2 cut(s) 146, 588
Mph1103I ATGCAT 1 cut(s) 418
MseI TTAA 1 cut(s) 591
MspR9I CCNGG 1 cut(s) 467
MvaI CCWGG 1 cut(s) 467
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 550
PkrI GCNGC 2 cut(s) 12, 398
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 2 cut(s) 11, 397
ScrFI CCNGG 1 cut(s) 467
SfaNI GCATC 3 cut(s) 188, 425, 449
Sfr274I CTCGAG 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 43
SmlI CTYRAG 3 cut(s) 43, 334, 371
SmoI CTYRAG 3 cut(s) 43, 334, 371
Sse9I AATT 2 cut(s) 146, 588
SspMI CTAG 3 cut(s) 117, 207, 449
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 604
TaqI TCGA 3 cut(s) 44, 243, 510
TasI AATT 2 cut(s) 146, 588
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 1 cut(s) 544
TseI GCWGC 2 cut(s) 10, 396
TspDTI ATGAA 2 cut(s) 92, 344
TspRI CASTG 1 cut(s) 544
Van91I CCANNNNNTGG 1 cut(s) 550
XagI CCTNNNNNAGG 1 cut(s) 99
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 416
XhoI CTCGAG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 504
XspI CTAG 3 cut(s) 117, 207, 449
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.