Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Reverse (-)

18748873 .. 18752117

Gene Structure 3245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG175800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAGGAGAGACTCTTCCTTCTTCCTCTCTCAACCCAATTGCGTCTTCTACGGCCAACTTGCTTCCAGAAATGAAGCCCCCAATTTGAGAGAAGCTTGTGAAAGTGCTTTGAAAGAGAAACATGATGATTTTCAGATGGAAGGGTTTGTGGATGAAGCTAGCACTACACATATGGAACAGTTAGAGGCTTTTGGAAGAGTGTTTGAGAAAGCTGCAGAAGCTGACACAGCAAGTTGTCCTAGTAGTTCTTTCGGAAATCTAGTTGCGAATGAGGCGTCATTTGCGCCGAGGATTGTATGTATAGCTGCATATCGCAGCGGTCTGGAAATTAGTACACATGTCACTAGGAAAGATGTTGAGGAAGGTCTTTCTGAGGTCATACAGGCTGGAAAGCCTGTTCGCATATCAAATAAAAGTTTTATCGACTATATTTTCACTCGTAGTTTGGAGGTTGCTCTACTTTTTGACTTGCCAATGCAGATACATACAGGTTTTGGCGACAAAGATTTGGACTTGAGGCTATCCAATCCCCTTCATCTCCGGGCTGTGCTTGAGGCCAAGAGATTTTCTAAAAGTCGCATTGTTCTTTTACATGCATCCTACCCGTTTTCGAAGGAAGCATCATATCTAGCCTCTGTTTATCCCCAGGTGATATTTGCAGTTTCGTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

224

Amino Acids

25.0

Weight (kDa)

5.72

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_2	PF04909	154 - 222	7e-07	Amidohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	112, 670
AjnI	CCWGG	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	5 cut(s)	95, 158, 212, 221, 305
AluI	AGCT	5 cut(s)	95, 158, 212, 221, 305
Alw26I	GTCTC	1 cut(s)	3
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	2 cut(s)	52, 555
ApeKI	GCWGC	3 cut(s)	212, 305, 315
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	661
AsuII	TTCGAA	1 cut(s)	611
AsuNHI	GCTAGC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	199, 292, 327
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	647
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	3
BfaI	CTAG	5 cut(s)	159, 240, 260, 345, 629
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	3 cut(s)	213, 306, 316
BlsI	GCNGC	3 cut(s)	214, 307, 317
Bme1390I	CCNGG	2 cut(s)	542, 647
BmrFI	CCNGG	2 cut(s)	542, 647
BmsI	GCATC	2 cut(s)	605, 629
BmtI	GCTAGC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	611
BpuEI	CTTGAG	2 cut(s)	535, 572
BpuMI	CCSGG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	287, 645
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	2 cut(s)	287, 645
BseGI	GGATG	2 cut(s)	157, 596
BseMII	CTCAG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	199, 292, 327
BshFI	GGCC	2 cut(s)	54, 557
BsiSI	CCGG	1 cut(s)	541
BsmAI	GTCTC	1 cut(s)	3
BsnI	GGCC	2 cut(s)	54, 557
Bsp119I	TTCGAA	1 cut(s)	611
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	2 cut(s)	54, 557
BspCNI	CTCAG	1 cut(s)	364
BspMAI	CTGCAG	1 cut(s)	217
BspOI	GCTAGC	1 cut(s)	162
BspT104I	TTCGAA	1 cut(s)	611
BssECI	CCNNGG	2 cut(s)	287, 645
BssNI	GRCGYC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	1 cut(s)	180
Bst6I	CTCTTC	2 cut(s)	19, 190
BstACI	GRCGYC	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	157, 596
BstHHI	GCGC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 227, 272, 281
BstNI	CCWGG	1 cut(s)	647
BstNSI	RCATGY	2 cut(s)	341, 596
BstSCI	CCNGG	2 cut(s)	540, 645
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	199, 292, 327
BstV2I	GAAGAC	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	54, 557
BtsCI	GGATG	2 cut(s)	157, 596
Cac8I	GCNNGC	1 cut(s)	160
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	286
CseI	GACGC	2 cut(s)	31, 264
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	3 cut(s)	122, 338, 593
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	19, 190
EarI	CTCTTC	2 cut(s)	19, 190
EcoRII	CCWGG	1 cut(s)	645
EcoT22I	ATGCAT	1 cut(s)	598
FaeI	CATG	3 cut(s)	125, 341, 596
FatI	CATG	3 cut(s)	121, 337, 592
FauNDI	CATATG	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	213, 306, 316
FokI	GGATG	2 cut(s)	164, 583
Fsp4HI	GCNGC	3 cut(s)	213, 306, 316
FspBI	CTAG	5 cut(s)	159, 240, 260, 345, 629
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	3 cut(s)	213, 306, 316
HaeIII	GGCC	2 cut(s)	54, 557
HapII	CCGG	1 cut(s)	541
HgaI	GACGC	2 cut(s)	31, 264
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	125, 341, 596
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	3 cut(s)	135, 254, 373
Hpy188III	TCNNGA	2 cut(s)	66, 323
Hpy8I	GTNNAC	1 cut(s)	335
HpyAV	CCTTC	5 cut(s)	28, 134, 356, 542, 607
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	215, 308, 478, 596, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 227, 272, 281
HpyF3I	CTNAG	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	125, 341, 596
HspAI	GCGC	1 cut(s)	284
LpnPI	CCDG	9 cut(s)	79, 308, 368, 372, 408, 474, 554, 632, 659
Lsp1109I	GCAGC	3 cut(s)	199, 292, 327
LweI	GCATC	2 cut(s)	605, 629
MaeI	CTAG	5 cut(s)	159, 240, 260, 345, 629
MaeIII	GTNAC	1 cut(s)	340
MboII	GAAGA	4 cut(s)	6, 13, 37, 207
MfeI	CAATTG	1 cut(s)	37
MluCI	AATT	4 cut(s)	37, 82, 327, 670
MlyI	GAGTC	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	598
MseI	TTAA	1 cut(s)	673
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	2 cut(s)	542, 647
MunI	CAATTG	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	4 cut(s)	218, 227, 272, 281
NciI	CCSGG	1 cut(s)	542
NdeI	CATATG	1 cut(s)	171
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	3 cut(s)	125, 341, 596
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	2 cut(s)	341, 596
NspV	TTCGAA	1 cut(s)	611
PciI	ACATGT	1 cut(s)	337
PkrI	GCNGC	3 cut(s)	214, 307, 317
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PscI	ACATGT	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	673
SatI	GCNGC	3 cut(s)	213, 306, 316
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	2 cut(s)	542, 647
SfaNI	GCATC	2 cut(s)	605, 629
SfcI	CTRYAG	1 cut(s)	213
SfuI	TTCGAA	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	514, 551
SmoI	CTYRAG	2 cut(s)	514, 551
Sse9I	AATT	4 cut(s)	37, 82, 327, 670
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	5 cut(s)	159, 240, 260, 345, 629
StyD4I	CCNGG	2 cut(s)	540, 645
TaaI	ACNGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	423, 611
TasI	AATT	4 cut(s)	37, 82, 327, 670
TatI	WGTACW	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	673
Tru9I	TTAA	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	3 cut(s)	212, 305, 315
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	87, 168, 524
XceI	RCATGY	2 cut(s)	341, 596
XspI	CTAG	5 cut(s)	159, 240, 260, 345, 629
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.