Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008849.1

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Reverse (-)

14263 .. 19259

Gene Structure 4997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008849.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgcctaatgcgtttactgatatcacaaaagtgatgagatcacatataccagctgcaaatgtgtctacaaggttagaagtccccaacaaggggcacggtgcagcagatagaggcactgcaaccacacttattggaggtgtggttaaggtcgtggctccccaaatgaagagggggaggccgcttggttcgattgacactcacctaaggaataagagggcgactgcatatcgcagcggtctggaaattagtacacatgtcactaggaaagatgttgaggaaggtgtttctgaggtcatacaggctggaaagcctgttcacatatcaaataaaagttttatcgactatattttcactcgtagtttggaggttgctctactttttgacttgccaatgcagatacatacaggttttggcgacaaagatttggacttgaggctattcaatccccttcatctccgggctgtgcttgaggacaagagattttctaaaagccgcattgttcttttacatgcatcctacccgttttcgaaggaagcatcatatctagcctctgtttatccccaggtctacctcgactttggcttggctatacccaagctcagtgtccaagggatggtatcttcactaaaagaacttttggagcttgctccaattaagaagtgtgtccatgaatcaatactggaggacactccgatgtttgaaatgattctagagcacaaagaaatctcaatggattatgagagtgcgtatgagttgatagaaagatgttccatacacattgatgatgtatttgcatacactgttgctcaagaaatcatagagcacgatgatatcgaaccacgctctattgcagaatgtcaacaaagagcagattggcctaaatggaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

296

Amino Acids

33.38

Weight (kDa)

6.32

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccI	GTMKAC	2 cut(s)	65, 567
AciI	CCGC	3 cut(s)	179, 234, 493
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	4 cut(s)	88, 89, 90, 613
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	442, 701
AjnI	CCWGG	1 cut(s)	561
AleI	CACNNNNGTG	1 cut(s)	29
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	3 cut(s)	53, 598, 643
AluI	AGCT	3 cut(s)	53, 598, 643
Alw21I	GWGCWC	2 cut(s)	717, 825
AoxI	GGCC	2 cut(s)	176, 875
ApeKI	GCWGC	3 cut(s)	53, 101, 231
Asp700I	GAANNNNTTC	1 cut(s)	705
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	527
AxyI	CCTNAGG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	717, 825
BbvI	GCAGC	3 cut(s)	40, 113, 243
BccI	CCATC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	458
BfaI	CTAG	3 cut(s)	261, 545, 710
BisI	GCNGC	5 cut(s)	54, 102, 179, 232, 493
BlsI	GCNGC	5 cut(s)	55, 103, 180, 233, 494
Bme1390I	CCNGG	2 cut(s)	458, 563
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	458, 563
BmsI	GCATC	2 cut(s)	521, 545
BpmI	CTGGAG	1 cut(s)	701
Bpu14I	TTCGAA	1 cut(s)	527
BpuEI	CTTGAG	3 cut(s)	451, 488, 792
BpuMI	CCSGG	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	561, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 89, 90, 613
Bse1I	ACTGG	1 cut(s)	684
Bse21I	CCTNAGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	2 cut(s)	561, 607
BseGI	GGATG	2 cut(s)	512, 618
BseLI	CCNNNNNNNGG	4 cut(s)	88, 89, 90, 613
BseMII	CTCAG	2 cut(s)	279, 613
BseNI	ACTGG	1 cut(s)	684
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	3 cut(s)	40, 113, 243
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	178, 877
BsiHKAI	GWGCWC	2 cut(s)	717, 825
BsiSI	CCGG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	88, 89, 90, 613
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	178, 877
Bsp119I	TTCGAA	1 cut(s)	527
Bsp1286I	GDGCHC	3 cut(s)	96, 717, 825
Bsp143I	GATC	1 cut(s)	38
BspACI	CCGC	3 cut(s)	179, 234, 493
BspANI	GGCC	2 cut(s)	178, 877
BspCNI	CTCAG	2 cut(s)	280, 612
BspLI	GGNNCC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	684
BssECI	CCNNGG	2 cut(s)	561, 607
BssMI	GATC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	98, 802
Bst6I	CTCTTC	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	3 cut(s)	203, 288, 599
BstF5I	GGATG	2 cut(s)	512, 618
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	2 cut(s)	257, 512
BstSCI	CCNGG	2 cut(s)	456, 561
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	40, 113, 243
Bsu36I	CCTNAGG	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	178, 877
BtsCI	GGATG	2 cut(s)	512, 618
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	3 cut(s)	114, 607, 798
Cac8I	GCNNGC	1 cut(s)	645
Csp6I	GTAC	1 cut(s)	249
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	3 cut(s)	254, 509, 668
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	3 cut(s)	203, 288, 599
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	607
Eco32I	GATATC	2 cut(s)	22, 832
Eco81I	CCTNAGG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	561
EcoRV	GATATC	2 cut(s)	22, 832
EcoT14I	CCWWGG	1 cut(s)	607
EcoT22I	ATGCAT	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	3 cut(s)	257, 512, 671
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	3 cut(s)	253, 508, 667
FblI	GTMKAC	2 cut(s)	65, 567
Fnu4HI	GCNGC	5 cut(s)	54, 102, 179, 232, 493
FokI	GGATG	2 cut(s)	499, 625
Fsp4HI	GCNGC	5 cut(s)	54, 102, 179, 232, 493
FspBI	CTAG	3 cut(s)	261, 545, 710
GluI	GCNGC	5 cut(s)	54, 102, 179, 232, 493
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	2 cut(s)	178, 877
HapII	CCGG	1 cut(s)	457
Hin1II	CATG	3 cut(s)	257, 512, 671
HincII	GTYRAC	1 cut(s)	860
HindII	GTYRAC	1 cut(s)	860
HinfI	GANTC	2 cut(s)	671, 706
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	6 cut(s)	15, 66, 251, 316, 568, 860
Hpy188I	TCNGA	2 cut(s)	289, 693
Hpy188III	TCNNGA	3 cut(s)	239, 710, 809
Hpy8I	GTNNAC	6 cut(s)	15, 66, 251, 316, 568, 860
HpyAV	CCTTC	3 cut(s)	272, 458, 523
HpyCH4III	ACNGT	2 cut(s)	98, 802
HpyCH4V	TGCA	8 cut(s)	56, 101, 119, 224, 394, 512, 794, 851
HpyF3I	CTNAG	3 cut(s)	203, 288, 599
Hsp92II	CATG	3 cut(s)	257, 512, 671
Kzo9I	GATC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	160, 640, 652
Lsp1109I	GCAGC	3 cut(s)	40, 113, 243
LweI	GCATC	2 cut(s)	521, 545
MaeI	CTAG	3 cut(s)	261, 545, 710
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	2 cut(s)	178, 612
MhlI	GDGCHC	3 cut(s)	96, 717, 825
MluCI	AATT	2 cut(s)	243, 651
Mph1103I	ATGCAT	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	2 cut(s)	144, 654
MslI	CAYNNNNRTG	3 cut(s)	29, 692, 780
MspA1I	CMGCKG	2 cut(s)	53, 234
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	2 cut(s)	458, 563
MvaI	CCWGG	1 cut(s)	563
NciI	CCSGG	1 cut(s)	458
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	3 cut(s)	257, 512, 671
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	2 cut(s)	257, 512
NspV	TTCGAA	1 cut(s)	527
OliI	CACNNNNGTG	1 cut(s)	29
PciI	ACATGT	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	2 cut(s)	671, 706
PflMI	CCANNNNNTGG	1 cut(s)	613
PkrI	GCNGC	5 cut(s)	55, 103, 180, 233, 494
PscI	ACATGT	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	3 cut(s)	29, 692, 780
SaqAI	TTAA	2 cut(s)	144, 654
SatI	GCNGC	5 cut(s)	54, 102, 179, 232, 493
Sau3AI	GATC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	458, 563
SduI	GDGCHC	3 cut(s)	96, 717, 825
SfaNI	GCATC	2 cut(s)	521, 545
SfuI	TTCGAA	1 cut(s)	527
SmiMI	CAYNNNNRTG	3 cut(s)	29, 692, 780
SmlI	CTYRAG	3 cut(s)	430, 467, 807
SmoI	CTYRAG	3 cut(s)	430, 467, 807
Sse9I	AATT	2 cut(s)	243, 651
SsiI	CCGC	3 cut(s)	179, 234, 493
SspMI	CTAG	3 cut(s)	261, 545, 710
StyD4I	CCNGG	2 cut(s)	456, 561
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	2 cut(s)	98, 802
TaqI	TCGA	5 cut(s)	188, 339, 527, 573, 834
TasI	AATT	2 cut(s)	243, 651
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	2 cut(s)	181, 495
TfiI	GAWTC	2 cut(s)	671, 706
Tru1I	TTAA	2 cut(s)	144, 654
Tru9I	TTAA	2 cut(s)	144, 654
TscAI	CASTG	3 cut(s)	121, 607, 805
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	53, 101, 231
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	3 cut(s)	179, 440, 684
TspRI	CASTG	3 cut(s)	121, 607, 805
Van91I	CCANNNNNTGG	1 cut(s)	613
XbaI	TCTAGA	1 cut(s)	709
XceI	RCATGY	2 cut(s)	257, 512
XmiI	GTMKAC	2 cut(s)	65, 567
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	3 cut(s)	261, 545, 710
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.