Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013667.1

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Forward (+)

108 .. 1758

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgcttgttcttacaggcctaccatcttccagctatgccctaggcatgaaattggcatgttatggtctaaagcaggcacaaatgattaaaaaactccggaatgaagatagtgtgctgcgcacgatcagaaatcggcggaaagctcaagaccattgggataaattgaggaaatatgtgatgtacacatggaactgcaaagcattggatgaatgttatgagagcacaaacaacagatcattttgcactgttttcagtacacaaccagtactccgaagtgggacatcacagaagcgaatgcaacatgaagcagataccattagttttaacaggaaactcagcttaaataacaagaagactgtcgttcaagagtgcttggacactgatggggatgtggaattttatacatcgagaactagagtgaaccctccggaaagttcatcaaattctggagctggagttggacctcatctgcaaagtgaattacttgcctctacaagggatggaaaacagcaaggtgttgcttcgtgcgagcaagattcgtacctgcctaaagcatcatctctcacaaatgatgatatcattcctccacccccttcacttgaactgaaggaccctgctgaaatggatatgtctgatgttcagaagaatcttaaaagtttgtacgagtacaatgcgatgcttagggaaaaactagtagaggctcagtctttgttccattctttagctacaaactcttcaacagaagtccaaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

28.25

Weight (kDa)

8.14

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	552
AccIII	TCCGGA	2 cut(s)	96, 427
AciI	CCGC	1 cut(s)	136
AcsI	RAATTY	2 cut(s)	395, 442
AcuI	CTGAAG	1 cut(s)	626
AfaI	GTAC	6 cut(s)	182, 256, 267, 542, 662, 668
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	365, 602, 738
AhlI	ACTAGT	1 cut(s)	691
AluBI	AGCT	5 cut(s)	33, 143, 339, 452, 725
AluI	AGCT	5 cut(s)	33, 143, 339, 452, 725
Alw21I	GWGCWC	1 cut(s)	224
Aor13HI	TCCGGA	2 cut(s)	96, 427
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	395, 442
AspA2I	CCTAGG	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	461, 610
AvaII	GGWCC	2 cut(s)	461, 610
AvrII	CCTAGG	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	3 cut(s)	31, 377, 494
BcgI	CGANNNNNNTGC	2 cut(s)	653, 687
BcuI	ACTAGT	1 cut(s)	691
BfaI	CTAG	3 cut(s)	41, 414, 692
BfuAI	ACCTGC	1 cut(s)	552
BisI	GCNGC	1 cut(s)	116
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	117
BmcAI	AGTACT	1 cut(s)	267
Bme18I	GGWCC	2 cut(s)	461, 610
BmgT120I	GGNCC	2 cut(s)	461, 610
BmiI	GGNNCC	1 cut(s)	612
BmsI	GCATC	2 cut(s)	563, 666
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	468, 474
Bpu10I	CCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	2 cut(s)	96, 427
BsaXI	ACNNNNNCTCC	4 cut(s)	252, 282, 441, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	1 cut(s)	263
BseAI	TCCGGA	2 cut(s)	96, 427
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	3 cut(s)	211, 394, 505
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	349, 716
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	97, 428
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp13I	TCCGGA	2 cut(s)	96, 427
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	123, 233
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	2 cut(s)	348, 715
BspEI	TCCGGA	2 cut(s)	96, 427
BspLI	GGNNCC	1 cut(s)	612
BspMI	ACCTGC	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	123, 233
BssT1I	CCWWGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	247, 358
Bst6I	CTCTTC	1 cut(s)	739
BstAUI	TGTACA	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	75, 530
BstDEI	CTNAG	3 cut(s)	335, 680, 702
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	211, 394, 505
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	126, 236
BstMBI	GATC	2 cut(s)	123, 233
BstNSI	RCATGY	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	689
BtsCI	GGATG	3 cut(s)	211, 394, 505
BtsIMutI	CAGTG	2 cut(s)	243, 378
BveI	ACCTGC	1 cut(s)	552
Cac8I	GCNNGC	2 cut(s)	75, 530
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	461, 610
Csp6I	GTAC	6 cut(s)	181, 255, 266, 541, 661, 667
CviAII	CATG	4 cut(s)	46, 57, 186, 302
CviJI	RGCY	7 cut(s)	18, 33, 143, 339, 452, 701, 725
CviKI_1	RGCY	7 cut(s)	18, 33, 143, 339, 452, 701, 725
CviQI	GTAC	6 cut(s)	181, 255, 266, 541, 661, 667
DdeI	CTNAG	3 cut(s)	335, 680, 702
DpnI	GATC	2 cut(s)	125, 235
DpnII	GATC	2 cut(s)	123, 233
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	577
Eco47I	GGWCC	2 cut(s)	461, 610
Eco57I	CTGAAG	1 cut(s)	626
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	4 cut(s)	49, 60, 189, 305
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	45, 56, 185, 301
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	3 cut(s)	218, 401, 512
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	3 cut(s)	41, 414, 692
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	116
GsuI	CTGGAG	2 cut(s)	468, 474
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	2 cut(s)	97, 428
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	49, 60, 189, 305
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	536, 646
HpaII	CCGG	2 cut(s)	97, 428
Hpy166II	GTNNAC	3 cut(s)	183, 257, 421
Hpy188I	TCNGA	4 cut(s)	128, 272, 634, 642
Hpy188III	TCNNGA	6 cut(s)	97, 146, 365, 408, 428, 447
Hpy8I	GTNNAC	3 cut(s)	183, 257, 421
HpyAV	CCTTC	2 cut(s)	601, 603
HpyCH4III	ACNGT	2 cut(s)	247, 358
HpyCH4V	TGCA	4 cut(s)	195, 243, 298, 472
HpyF3I	CTNAG	3 cut(s)	335, 680, 702
Hsp92II	CATG	4 cut(s)	49, 60, 189, 305
HspAI	GCGC	1 cut(s)	118
Kpn2I	TCCGGA	2 cut(s)	96, 427
Kzo9I	GATC	2 cut(s)	123, 233
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	2 cut(s)	563, 666
MaeI	CTAG	3 cut(s)	41, 414, 692
MalI	GATC	2 cut(s)	125, 235
MboI	GATC	2 cut(s)	123, 233
MboII	GAAGA	5 cut(s)	18, 116, 364, 655, 726
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	5 cut(s)	50, 161, 395, 442, 479
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	6 cut(s)	159, 435, 474, 499, 594, 691
MroI	TCCGGA	2 cut(s)	96, 427
MseI	TTAA	4 cut(s)	87, 324, 341, 651
MspI	CCGG	2 cut(s)	97, 428
Mva1269I	GAATGC	1 cut(s)	300
NdeII	GATC	2 cut(s)	123, 233
NlaIII	CATG	4 cut(s)	49, 60, 189, 305
NlaIV	GGNNCC	1 cut(s)	612
NsbI	TGCGCA	1 cut(s)	119
NspI	RCATGY	1 cut(s)	60
PceI	AGGCCT	1 cut(s)	18
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	536, 646
PkrI	GCNGC	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	610
Psp5II	RGGWCCY	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	612
PspPI	GGNCC	2 cut(s)	461, 610
PspPPI	RGGWCCY	1 cut(s)	610
RsaI	GTAC	6 cut(s)	182, 256, 267, 542, 662, 668
RsaNI	GTAC	6 cut(s)	181, 255, 266, 541, 661, 667
SaqAI	TTAA	4 cut(s)	87, 324, 341, 651
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	123, 233
Sau96I	GGNCC	2 cut(s)	461, 610
ScaI	AGTACT	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	8 cut(s)	35, 145, 341, 454, 466, 517, 546, 727
SfaNI	GCATC	2 cut(s)	563, 666
SinI	GGWCC	2 cut(s)	461, 610
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
SpeI	ACTAGT	1 cut(s)	691
Sse9I	AATT	5 cut(s)	50, 161, 395, 442, 479
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	3 cut(s)	41, 414, 692
StuI	AGGCCT	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	247, 358
TaqI	TCGA	1 cut(s)	407
TasI	AATT	5 cut(s)	50, 161, 395, 442, 479
TatI	WGTACW	4 cut(s)	180, 254, 265, 666
TfiI	GAWTC	2 cut(s)	536, 646
Tru1I	TTAA	4 cut(s)	87, 324, 341, 651
Tru9I	TTAA	4 cut(s)	87, 324, 341, 651
TscAI	CASTG	2 cut(s)	250, 385
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	5 cut(s)	62, 117, 222, 318, 426
TspRI	CASTG	2 cut(s)	250, 385
VpaK11BI	GGWCC	2 cut(s)	461, 610
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	2 cut(s)	395, 442
XceI	RCATGY	1 cut(s)	60
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	3 cut(s)	41, 414, 692
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.