Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Reverse (-)

62620148 .. 62622908

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAAGTTGCCGGGTGGATCTTCTTGGACATTGGATGTGTTCACTGAAGCATTTATTTTTGGCTTGAAAAGTATAGCTGCATATCGCAGCAGTCTGGAAATTAGTACACATGTCACTAGGAAAGATGTTGAGGAAGGTCTTTCTAAGGTCATACGGGCTGGAAAGCCTGTTCGCATATCAAATAAAAGTTTTATCGGCTATATTTTCACTCGTAGTTTGGAGGTCATTGAGGATGATAAGCGTTTTCACATACAGGTCTACCTCGACTTTGGCTTGGCTATACCCAAGCTCGGTGTCCAAGGGATGGTATCTTCACTAAAAGAACTTTTGGAGCTTGCTCCAATTAAGAAAGGTAACAGTATATCTGGTTTTCAGTTCGAACGCTCTACTAGGGTTTGTGGTGCGGCGGCCATTCTTGGTTGTCGTGTCCTATACCTACTGCATTCATGGAGAAAATCTCGGGCTTTTGCCTCTTCATCTTCGTACGTTGAGCGGAGTTTGGGTGCTGATGGGGCTGTGTCGATGGGCCAAGTTGCTTTGTTGGTACACCATCGGAGGGATGCGGTGATTGCGGGAGAAGTGGGATCCGGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

198

Amino Acids

21.62

Weight (kDa)

9.54

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	304
AccBSI	CCGCTC	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	5 cut(s)	404, 407, 493, 563, 572
AclWI	GGATC	3 cut(s)	25, 579, 592
AcoI	YGGCCR	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	3 cut(s)	106, 485, 546
AfiI	CCNNNNNNNGG	3 cut(s)	290, 304, 556
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	67
AloI	GAACNNNNNNTCC	2 cut(s)	153, 185
AluBI	AGCT	3 cut(s)	77, 289, 334
AluI	AGCT	3 cut(s)	77, 289, 334
AlwI	GGATC	3 cut(s)	25, 579, 592
Ama87I	CYCGRG	1 cut(s)	459
AoxI	GGCC	2 cut(s)	408, 526
ApeKI	GCWGC	2 cut(s)	77, 87
AspS9I	GGNCC	1 cut(s)	526
AsuC2I	CCSGG	2 cut(s)	12, 589
AsuHPI	GGTGA	1 cut(s)	577
AsuII	TTCGAA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	459
BamHI	GGATCC	1 cut(s)	584
BbvI	GCAGC	2 cut(s)	64, 99
BccI	CCATC	4 cut(s)	298, 503, 517, 558
BcnI	CCSGG	2 cut(s)	12, 589
BfaI	CTAG	2 cut(s)	117, 390
BisI	GCNGC	4 cut(s)	78, 88, 405, 408
BlsI	GCNGC	4 cut(s)	79, 89, 406, 409
Bme1390I	CCNGG	2 cut(s)	12, 589
BmeT110I	CYCGRG	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	526
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	2 cut(s)	12, 589
BmsI	GCATC	1 cut(s)	550
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
Bpu14I	TTCGAA	1 cut(s)	378
BpuMI	CCSGG	2 cut(s)	12, 589
BsaJI	CCNNGG	2 cut(s)	298, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 304, 556
BseDI	CCNNGG	2 cut(s)	298, 588
BseGI	GGATG	4 cut(s)	40, 238, 309, 565
BseLI	CCNNNNNNNGG	3 cut(s)	290, 304, 556
BseXI	GCAGC	2 cut(s)	64, 99
BshFI	GGCC	2 cut(s)	410, 528
BsiHKCI	CYCGRG	1 cut(s)	459
BsiSI	CCGG	2 cut(s)	11, 588
BsiWI	CGTACG	1 cut(s)	483
BslI	CCNNNNNNNGG	3 cut(s)	290, 304, 556
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	410, 528
BsoBI	CYCGRG	1 cut(s)	459
Bsp119I	TTCGAA	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	17, 584
BspACI	CCGC	5 cut(s)	404, 407, 493, 563, 572
BspANI	GGCC	2 cut(s)	410, 528
BspLI	GGNNCC	1 cut(s)	586
BspPI	GGATC	3 cut(s)	25, 579, 592
BspT104I	TTCGAA	1 cut(s)	378
BsrBI	CCGCTC	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	298, 588
BssMI	GATC	2 cut(s)	17, 584
BssT1I	CCWWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	478
BstBI	TTCGAA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	4 cut(s)	40, 238, 309, 565
BstKTI	GATC	2 cut(s)	20, 587
BstMBI	GATC	2 cut(s)	17, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 569
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	2 cut(s)	10, 587
BstV1I	GCAGC	2 cut(s)	64, 99
BstX2I	RGATCY	2 cut(s)	17, 584
BstYI	RGATCY	2 cut(s)	17, 584
BsuRI	GGCC	2 cut(s)	410, 528
BtsCI	GGATG	4 cut(s)	40, 238, 309, 565
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	105, 484, 545
CviAII	CATG	2 cut(s)	110, 447
CviQI	GTAC	3 cut(s)	105, 484, 545
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	19, 586
DpnII	GATC	2 cut(s)	17, 584
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	2 cut(s)	113, 450
FatI	CATG	2 cut(s)	109, 446
FauI	CCCGC	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	78, 88, 405, 408
FokI	GGATG	4 cut(s)	47, 245, 316, 572
Fsp4HI	GCNGC	4 cut(s)	78, 88, 405, 408
FspBI	CTAG	2 cut(s)	117, 390
GluI	GCNGC	4 cut(s)	78, 88, 405, 408
HaeIII	GGCC	2 cut(s)	410, 528
HapII	CCGG	2 cut(s)	11, 588
Hin1II	CATG	2 cut(s)	113, 450
HpaII	CCGG	2 cut(s)	11, 588
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	4 cut(s)	42, 107, 259, 547
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	4 cut(s)	42, 107, 259, 547
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	2 cut(s)	80, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 569
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	2 cut(s)	113, 450
Kzo9I	GATC	2 cut(s)	17, 584
LmnI	GCTCC	2 cut(s)	331, 343
LpnPI	CCDG	6 cut(s)	24, 80, 144, 180, 239, 351
Lsp1109I	GCAGC	2 cut(s)	64, 99
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	2 cut(s)	117, 390
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	112, 353
MalI	GATC	2 cut(s)	19, 586
MbiI	CCGCTC	1 cut(s)	493
MboI	GATC	2 cut(s)	17, 584
MboII	GAAGA	4 cut(s)	12, 303, 465, 471
MflI	RGATCY	2 cut(s)	17, 584
MluCI	AATT	2 cut(s)	99, 342
MnlI	CCTC	6 cut(s)	124, 214, 223, 272, 481, 549
MseI	TTAA	1 cut(s)	345
MspI	CCGG	2 cut(s)	11, 588
MspR9I	CCNGG	2 cut(s)	12, 589
Mva1269I	GAATGC	1 cut(s)	442
MwoI	GCNNNNNNNGC	2 cut(s)	512, 569
NciI	CCSGG	2 cut(s)	12, 589
NdeII	GATC	2 cut(s)	17, 584
NlaIII	CATG	2 cut(s)	113, 450
NlaIV	GGNNCC	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	113
NspV	TTCGAA	1 cut(s)	378
PciI	ACATGT	1 cut(s)	109
PctI	GAATGC	1 cut(s)	442
Pfl23II	CGTACG	1 cut(s)	483
PflMI	CCANNNNNTGG	1 cut(s)	304
PkrI	GCNGC	4 cut(s)	79, 89, 406, 409
PscI	ACATGT	1 cut(s)	109
PspLI	CGTACG	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	1 cut(s)	526
PsuI	RGATCY	2 cut(s)	17, 584
RsaI	GTAC	3 cut(s)	106, 485, 546
RsaNI	GTAC	3 cut(s)	105, 484, 545
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	4 cut(s)	78, 88, 405, 408
Sau3AI	GATC	2 cut(s)	17, 584
Sau96I	GGNCC	1 cut(s)	526
ScrFI	CCNGG	2 cut(s)	12, 589
SfaNI	GCATC	1 cut(s)	550
SfuI	TTCGAA	1 cut(s)	378
Sse9I	AATT	2 cut(s)	99, 342
SsiI	CCGC	5 cut(s)	404, 407, 493, 563, 572
SspMI	CTAG	2 cut(s)	117, 390
StyD4I	CCNGG	2 cut(s)	10, 587
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	3 cut(s)	264, 378, 521
TasI	AATT	2 cut(s)	99, 342
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	2 cut(s)	407, 410
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	77, 87
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	3 cut(s)	17, 435, 465
TspRI	CASTG	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	304
XceI	RCATGY	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	2 cut(s)	117, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.