Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Reverse (-)

15904702 .. 15906987

Gene Structure 2286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23402

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGAGGCAGCGTAAAGAGGAAGAAGTCAAAACTCAATCCTCGAGAAAAGGAGAAGAGGCAGAGCAATCAGTAATGAACAGGGCAAGTAGTCCTCAAACAGGGGGTCAGCAATCTGGTGGAACCCTGAAATCGTTGAAGGATAAATTTAGCAAGGAGGAGAAAGAAAAGTTGCTGGGTGGATCTTCTTGGACATTGGATGTGTTCACTGAAGCATTTGTTGGAAATATAGCTGCATATCGCAGCGGTCTGGAAATTAGTACACATGTCACTAGAAAAGATGTTGAGGAAGGTCTTTCTGAGGTCATACAGGCTGGAAAGCCTGTTCACATATCAAATAAAAGTTTTATCGACTATATTTTCACTCGTAGTTTGGAGGTTGCTCTACTTTTTGACTTGCCAATGCAGATACATACAGGTTTTGGCGACAAAGATTTGGACTTGAGGCTATCCAATCCCCTTCATCTCCGGGCTGTGCTTGAGGCCAAGAGATTTTCTAAAAGCCGCATTGTTCTTTTACATGCATCCTACCCGTTTTCAAAGGAAGCATCATATCTAGCCTCTGTTTATCCCCAGGTCTACCTCGACTTTGGCTTGGCTATACCCAAGCTCAGTGTTCAAGGGATGGTATCTTCACTAAAAGAACTTTTGGAGCTTGCTCCAATTAAGAAGGAAACAGTACAGAGAGTTAGAGAATTAGTTCAGTTTGGGGATTTCAGCTTCTTCAAAGTTTGTGGTTACGTTTTGGTTGGACATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

253

Amino Acids

28.35

Weight (kDa)

7.8

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_2	PF04909	131 - 221	4.2e-09	Amidohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	2 cut(s)	246, 505
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	2 cut(s)	262, 681
AfiI	CCNNNNNNNGG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	139, 540, 620, 727
AjnI	CCWGG	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	4 cut(s)	233, 610, 655, 720
AluI	AGCT	4 cut(s)	233, 610, 655, 720
AlwI	GGATC	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	3 cut(s)	10, 233, 243
ApoI	RAATTY	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
Asp700I	GAANNNNTTC	1 cut(s)	699
AsuC2I	CCSGG	1 cut(s)	470
AvaI	CYCGRG	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	22, 220, 255
BccI	CCATC	1 cut(s)	619
BciT130I	CCWGG	1 cut(s)	575
BcnI	CCSGG	1 cut(s)	470
BfaI	CTAG	2 cut(s)	273, 557
BisI	GCNGC	4 cut(s)	11, 234, 244, 505
BlsI	GCNGC	4 cut(s)	12, 235, 245, 506
Bme1390I	CCNGG	2 cut(s)	470, 575
BmeT110I	CYCGRG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	470, 575
BmsI	GCATC	2 cut(s)	533, 557
BpuEI	CTTGAG	2 cut(s)	463, 500
BpuMI	CCSGG	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	3 cut(s)	205, 524, 630
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	291, 625
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	22, 220, 255
BseYI	CCCAGC	1 cut(s)	175
BshFI	GGCC	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	469
BslI	CCNNNNNNNGG	1 cut(s)	101
BsnI	GGCC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	182
BspACI	CCGC	2 cut(s)	246, 505
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	2 cut(s)	292, 624
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	679
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	2 cut(s)	300, 611
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	205, 524, 630
BstKTI	GATC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	2 cut(s)	269, 524
BstSCI	CCNGG	2 cut(s)	468, 573
BstV1I	GCAGC	3 cut(s)	22, 220, 255
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	485
BtsCI	GGATG	3 cut(s)	205, 524, 630
BtsIMutI	CAGTG	2 cut(s)	207, 619
Cac8I	GCNNGC	1 cut(s)	657
Csp6I	GTAC	2 cut(s)	261, 680
CspCI	CAANNNNNGTGG	2 cut(s)	715, 750
CviAII	CATG	3 cut(s)	266, 521, 755
CviQI	GTAC	2 cut(s)	261, 680
DdeI	CTNAG	2 cut(s)	300, 611
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	526
FaeI	CATG	3 cut(s)	269, 524, 758
FatI	CATG	3 cut(s)	265, 520, 754
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	4 cut(s)	11, 234, 244, 505
FokI	GGATG	3 cut(s)	212, 511, 637
Fsp4HI	GCNGC	4 cut(s)	11, 234, 244, 505
FspBI	CTAG	2 cut(s)	273, 557
GluI	GCNGC	4 cut(s)	11, 234, 244, 505
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	1 cut(s)	469
Hin1II	CATG	3 cut(s)	269, 524, 758
HpaII	CCGG	1 cut(s)	469
Hpy166II	GTNNAC	4 cut(s)	207, 263, 328, 580
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	2 cut(s)	45, 251
Hpy8I	GTNNAC	4 cut(s)	207, 263, 328, 580
HpyAV	CCTTC	4 cut(s)	133, 284, 470, 664
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	3 cut(s)	236, 406, 524
HpyF3I	CTNAG	2 cut(s)	300, 611
HpySE526I	ACGT	1 cut(s)	741
Hsp92II	CATG	3 cut(s)	269, 524, 758
Kzo9I	GATC	1 cut(s)	182
LmnI	GCTCC	2 cut(s)	652, 664
Lsp1109I	GCAGC	3 cut(s)	22, 220, 255
LweI	GCATC	2 cut(s)	533, 557
MaeI	CTAG	2 cut(s)	273, 557
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	2 cut(s)	268, 737
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	5 cut(s)	35, 68, 177, 624, 715
MflI	RGATCY	1 cut(s)	182
MluCI	AATT	4 cut(s)	146, 255, 663, 695
MmeI	TCCRAC	2 cut(s)	202, 730
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	2 cut(s)	470, 575
MvaI	CCWGG	1 cut(s)	575
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	3 cut(s)	269, 524, 758
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	2 cut(s)	269, 524
PaeR7I	CTCGAG	1 cut(s)	43
PciI	ACATGT	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	699
PkrI	GCNGC	4 cut(s)	12, 235, 245, 506
PscI	ACATGT	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	573
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	182
RsaI	GTAC	2 cut(s)	262, 681
RsaNI	GTAC	2 cut(s)	261, 680
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	4 cut(s)	11, 234, 244, 505
Sau3AI	GATC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	470, 575
SfaNI	GCATC	2 cut(s)	533, 557
Sfr274I	CTCGAG	1 cut(s)	43
SlaI	CTCGAG	1 cut(s)	43
SmlI	CTYRAG	3 cut(s)	43, 442, 479
SmoI	CTYRAG	3 cut(s)	43, 442, 479
Sse9I	AATT	4 cut(s)	146, 255, 663, 695
SsiI	CCGC	2 cut(s)	246, 505
SspMI	CTAG	2 cut(s)	273, 557
StyD4I	CCNGG	2 cut(s)	468, 573
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	3 cut(s)	44, 351, 585
TasI	AATT	4 cut(s)	146, 255, 663, 695
TatI	WGTACW	2 cut(s)	260, 679
TauI	GCSGC	1 cut(s)	507
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	2 cut(s)	214, 619
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	10, 233, 243
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	92, 452
TspRI	CASTG	2 cut(s)	214, 619
XagI	CCTNNNNNAGG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	2 cut(s)	269, 524
XhoI	CTCGAG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	579
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	273, 557
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.