Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8443701.1

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1138

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8443701.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

gatgatcaaaagatggttaagaaacggaaaacagaacttggtggaatgttttcaacagcaagctggatactctttattggtttgtttgctgcgttgctctaccaaatcataactaagagaagtatcgaggtacataatgtcagagcatcaaatgcacctgatttggccttgttcaacaatgacctggaatttaacataaccactatttctagtatgagctgttcaaacttacgtgatcttggtactttggtcactggaaatcctggcttcatcgactacagagtggttcctctgtcaaaatttgggaactactcatgtcaaaatacaagtggaggaccaaggataactcttaggtgcaataattgtcaaccaattcaagacaatatgtacatttcctggcagttcactgatcttcctgataatcctgctgctgctgttggatttcagttcaatcttactacaaggagccatgctaataaaagacatctgagttttgttagtggaaccctgaagaatgcaagtactttggatgatagaccagttacattcagagggattaatacaaatatattgaaattcagtttatttccgcggatataccgtaatctacatgatctaaggctcatccaacctttgtttcatgcgtttgtaccgggttcattctttaatgacacaagtcagctccaagcatcccttcaaagtccgaaggatggaaaacttaacactacattgtacatcaacttcctctctgactacattgtggagatagataagcaaaatattatgggtcctggtaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

29.91

Weight (kDa)

9.3

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	592
AciI	CCGC	2 cut(s)	590, 592
AcsI	RAATTY	3 cut(s)	188, 299, 575
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	6 cut(s)	132, 244, 389, 523, 651, 734
AfiI	CCNNNNNNNGG	1 cut(s)	710
AgsI	TTSAA	7 cut(s)	54, 175, 225, 377, 451, 574, 698
AjnI	CCWGG	4 cut(s)	183, 262, 395, 790
AjuI	GAANNNNNNNTTGG	4 cut(s)	621, 653, 678, 710
AluBI	AGCT	3 cut(s)	63, 219, 682
AluI	AGCT	3 cut(s)	63, 219, 682
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	3 cut(s)	89, 428, 431
ApoI	RAATTY	3 cut(s)	188, 299, 575
AseI	ATTAAT	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	335, 788
AsuC2I	CCSGG	1 cut(s)	654
AvaII	GGWCC	2 cut(s)	335, 788
BaeI	ACNNNNGTAYC	2 cut(s)	234, 267
BarI	GAAGNNNNNNTAC	2 cut(s)	725, 757
BbvI	GCAGC	3 cut(s)	76, 415, 418
BccI	CCATC	2 cut(s)	7, 704
BciT130I	CCWGG	4 cut(s)	185, 264, 397, 792
BciVI	GTATCC	1 cut(s)	60
BclI	TGATCA	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	654
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	277
BfuI	GTATCC	1 cut(s)	60
BisI	GCNGC	3 cut(s)	90, 429, 432
BlsI	GCNGC	3 cut(s)	91, 430, 433
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	5 cut(s)	185, 264, 397, 654, 792
Bme18I	GGWCC	2 cut(s)	335, 788
BmgT120I	GGNCC	2 cut(s)	335, 788
BmiI	GGNNCC	4 cut(s)	288, 467, 505, 789
BmrFI	CCNGG	5 cut(s)	185, 264, 397, 654, 792
BmsI	GCATC	2 cut(s)	155, 698
BoxI	GACNNNNGTC	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	338, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse1I	ACTGG	2 cut(s)	259, 539
BseBI	CCWGG	4 cut(s)	185, 264, 397, 792
BseDI	CCNNGG	2 cut(s)	338, 590
BseGI	GGATG	4 cut(s)	535, 624, 689, 715
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	2 cut(s)	259, 539
BseXI	GCAGC	3 cut(s)	76, 415, 418
Bsh1236I	CGCG	1 cut(s)	592
BshFI	GGCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	167
Bsp1407I	TGTACA	2 cut(s)	387, 732
Bsp143I	GATC	4 cut(s)	4, 235, 409, 613
BspACI	CCGC	2 cut(s)	590, 592
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	592
BspLI	GGNNCC	4 cut(s)	288, 467, 505, 789
BsrGI	TGTACA	2 cut(s)	387, 732
BsrI	ACTGG	2 cut(s)	259, 539
BssECI	CCNNGG	2 cut(s)	338, 590
BssMI	GATC	4 cut(s)	4, 235, 409, 613
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	4 cut(s)	185, 264, 397, 792
Bst4CI	ACNGT	1 cut(s)	602
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstAUI	TGTACA	2 cut(s)	387, 732
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	4 cut(s)	114, 350, 488, 617
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	4 cut(s)	535, 624, 689, 715
BstFNI	CGCG	1 cut(s)	592
BstKTI	GATC	4 cut(s)	7, 238, 412, 616
BstMBI	GATC	4 cut(s)	4, 235, 409, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	4 cut(s)	185, 264, 397, 792
BstPAI	GACNNNNGTC	1 cut(s)	675
BstSCI	CCNGG	5 cut(s)	183, 262, 395, 652, 790
BstSFI	CTRYAG	1 cut(s)	277
BstUI	CGCG	1 cut(s)	592
BstV1I	GCAGC	3 cut(s)	76, 415, 418
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	4 cut(s)	535, 624, 689, 715
BtsIMutI	CAGTG	2 cut(s)	252, 405
Cac8I	GCNNGC	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	335, 788
Cfr42I	CCGCGG	1 cut(s)	593
Csp6I	GTAC	6 cut(s)	131, 243, 388, 522, 650, 733
CviAII	CATG	4 cut(s)	315, 470, 611, 641
CviJI	RGCY	7 cut(s)	63, 167, 219, 267, 468, 622, 682
CviKI_1	RGCY	7 cut(s)	63, 167, 219, 267, 468, 622, 682
CviQI	GTAC	6 cut(s)	131, 243, 388, 522, 650, 733
DdeI	CTNAG	4 cut(s)	114, 350, 488, 617
DpnI	GATC	4 cut(s)	6, 237, 411, 615
DpnII	GATC	4 cut(s)	4, 235, 409, 613
Eco130I	CCWWGG	1 cut(s)	338
Eco47I	GGWCC	2 cut(s)	335, 788
Eco57I	CTGAAG	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRII	CCWGG	4 cut(s)	183, 262, 395, 790
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	4 cut(s)	318, 473, 614, 644
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FatI	CATG	4 cut(s)	314, 469, 610, 640
FbaI	TGATCA	1 cut(s)	4
Fnu4HI	GCNGC	3 cut(s)	90, 429, 432
FokI	GGATG	4 cut(s)	542, 611, 676, 722
Fsp4HI	GCNGC	3 cut(s)	90, 429, 432
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	3 cut(s)	90, 429, 432
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	653
Hin1II	CATG	4 cut(s)	318, 473, 614, 644
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HpaII	CCGG	1 cut(s)	653
Hpy166II	GTNNAC	2 cut(s)	368, 405
Hpy188I	TCNGA	5 cut(s)	143, 489, 551, 705, 751
Hpy188III	TCNNGA	2 cut(s)	377, 416
Hpy8I	GTNNAC	2 cut(s)	368, 405
HpyAV	CCTTC	2 cut(s)	700, 704
HpyCH4III	ACNGT	1 cut(s)	602
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	155, 357, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	4 cut(s)	114, 350, 488, 617
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	4 cut(s)	318, 473, 614, 644
Ksp22I	TGATCA	1 cut(s)	4
KspI	CCGCGG	1 cut(s)	593
Kzo9I	GATC	4 cut(s)	4, 235, 409, 613
LmnI	GCTCC	2 cut(s)	465, 687
Lsp1109I	GCAGC	3 cut(s)	76, 415, 418
LweI	GCATC	2 cut(s)	155, 698
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	250, 541
MalI	GATC	4 cut(s)	6, 237, 411, 615
MboI	GATC	4 cut(s)	4, 235, 409, 613
MboII	GAAGA	2 cut(s)	404, 523
MluCI	AATT	5 cut(s)	188, 299, 361, 372, 575
MmeI	TCCRAC	2 cut(s)	418, 652
MnlI	CCTC	5 cut(s)	121, 300, 326, 545, 755
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	5 cut(s)	18, 192, 558, 666, 720
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	1 cut(s)	653
MspR9I	CCNGG	5 cut(s)	185, 264, 397, 654, 792
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	4 cut(s)	185, 264, 397, 792
MvnI	CGCG	1 cut(s)	592
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	654
NdeII	GATC	4 cut(s)	4, 235, 409, 613
NlaIII	CATG	4 cut(s)	318, 473, 614, 644
NlaIV	GGNNCC	4 cut(s)	288, 467, 505, 789
NmuCI	GTSAC	1 cut(s)	250
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	91, 430, 433
Ppu21I	YACGTR	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	788
PshAI	GACNNNNGTC	1 cut(s)	675
PshBI	ATTAAT	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	788
Psp6I	CCWGG	4 cut(s)	183, 262, 395, 790
PspGI	CCWGG	4 cut(s)	183, 262, 395, 790
PspN4I	GGNNCC	4 cut(s)	288, 467, 505, 789
PspPI	GGNCC	2 cut(s)	335, 788
PspPPI	RGGWCCY	1 cut(s)	788
PsrI	GAACNNNNNNTAC	2 cut(s)	205, 237
RsaI	GTAC	6 cut(s)	132, 244, 389, 523, 651, 734
RsaNI	GTAC	6 cut(s)	131, 243, 388, 522, 650, 733
SacII	CCGCGG	1 cut(s)	593
SaqAI	TTAA	5 cut(s)	18, 192, 558, 666, 720
SatI	GCNGC	3 cut(s)	90, 429, 432
Sau3AI	GATC	4 cut(s)	4, 235, 409, 613
Sau96I	GGNCC	2 cut(s)	335, 788
ScaI	AGTACT	1 cut(s)	523
ScrFI	CCNGG	5 cut(s)	185, 264, 397, 654, 792
SetI	ASST	9 cut(s)	65, 132, 160, 186, 221, 235, 356, 634, 684
SfaNI	GCATC	2 cut(s)	155, 698
SfcI	CTRYAG	1 cut(s)	277
Sfr303I	CCGCGG	1 cut(s)	593
SgrBI	CCGCGG	1 cut(s)	593
SinI	GGWCC	2 cut(s)	335, 788
Sse9I	AATT	5 cut(s)	188, 299, 361, 372, 575
SsiI	CCGC	2 cut(s)	590, 592
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	5 cut(s)	183, 262, 395, 652, 790
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	602
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	126, 273
TasI	AATT	5 cut(s)	188, 299, 361, 372, 575
TatI	WGTACW	3 cut(s)	387, 521, 732
Tru1I	TTAA	5 cut(s)	18, 192, 558, 666, 720
Tru9I	TTAA	5 cut(s)	18, 192, 558, 666, 720
TscAI	CASTG	2 cut(s)	259, 412
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	3 cut(s)	89, 428, 431
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	259, 629, 648
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	259, 412
VpaK11BI	GGWCC	2 cut(s)	335, 788
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	3 cut(s)	188, 299, 575
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	1 cut(s)	210
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.