Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Reverse (-)

58588875 .. 58590596

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG349100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGAGGCAGCGTAAAGAGGAAGAAGTCAAAACTCAATCCTCAAGAAAAGGACAAGAGGCAGAGCAATCAGTAATGAACAGGGCAAGTAGTCCTCAAACAGGGGGTCAGCAATCTGGTGGAACCCTGAAATTGTTGAAGGATAAATTTAGCAAGGAGGAGAAAGAAGTCCCAGAAGCATCTGCTGCATATCGCAGCGGTCTGGAAATTAGTACACATGTCACTAGGAAAGATGCTGAGGAAGGTCTTTCTGAGGTCATACAGGCTGGAAAGCCTGTTCACATATCAAATAAAAGTTTTATCGACTATATTTTCACTCGTAGTTTGGAGGAAGCATCATATCTAGCCTCTGTTTATCCCCAGGTCTACCTCGACTTTGGCTTGGCTATACCCAAGCTCAGTGTCCAAGGGATGGTATCTTCACTAAAAGAACTTTTGGAGCTTGCTCCAATTAAGAAGGTAACAGTATATCTAGTTTTCAGTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

162

Amino Acids

17.98

Weight (kDa)

6.76

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	2 cut(s)	101, 412
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	360
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AluBI	AGCT	2 cut(s)	397, 442
AluI	AGCT	2 cut(s)	397, 442
ApeKI	GCWGC	3 cut(s)	10, 185, 195
ApoI	RAATTY	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	22, 172, 207
BccI	CCATC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	362
BfaI	CTAG	3 cut(s)	225, 344, 473
BisI	GCNGC	3 cut(s)	11, 186, 196
BlsI	GCNGC	3 cut(s)	12, 187, 197
Bme1390I	CCNGG	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	3 cut(s)	188, 223, 344
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	360, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 412
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	360, 406
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	101, 412
BseMII	CTCAG	3 cut(s)	228, 243, 412
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	22, 172, 207
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	101, 412
BsmFI	GGGAC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	3 cut(s)	229, 244, 411
BspLI	GGNNCC	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	360, 406
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	466
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	3 cut(s)	237, 252, 398
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	22, 172, 207
BtsCI	GGATG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	7 cut(s)	266, 274, 347, 381, 386, 397, 442
CviKI_1	RGCY	7 cut(s)	266, 274, 347, 381, 386, 397, 442
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	3 cut(s)	237, 252, 398
Eco130I	CCWWGG	1 cut(s)	406
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	1 cut(s)	221
FaiI	YATR	8 cut(s)	190, 219, 260, 284, 309, 340, 389, 469
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	11, 186, 196
FokI	GGATG	1 cut(s)	424
Fsp4HI	GCNGC	3 cut(s)	11, 186, 196
FspBI	CTAG	3 cut(s)	225, 344, 473
GluI	GCNGC	3 cut(s)	11, 186, 196
Hin1II	CATG	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	215, 280, 367
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	45, 203
Hpy8I	GTNNAC	3 cut(s)	215, 280, 367
HpyAV	CCTTC	3 cut(s)	133, 236, 451
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	3 cut(s)	237, 252, 398
Hsp92II	CATG	1 cut(s)	221
LmnI	GCTCC	2 cut(s)	439, 451
Lsp1109I	GCAGC	3 cut(s)	22, 172, 207
LweI	GCATC	3 cut(s)	188, 223, 344
MaeI	CTAG	3 cut(s)	225, 344, 473
MaeIII	GTNAC	2 cut(s)	220, 460
MboII	GAAGA	2 cut(s)	35, 411
MluCI	AATT	4 cut(s)	131, 146, 207, 450
MseI	TTAA	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	221
PciI	ACATGT	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	3 cut(s)	12, 187, 197
PscI	ACATGT	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	3 cut(s)	11, 186, 196
ScrFI	CCNGG	1 cut(s)	362
SetI	ASST	7 cut(s)	247, 258, 366, 372, 399, 444, 462
SfaNI	GCATC	3 cut(s)	188, 223, 344
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	4 cut(s)	131, 146, 207, 450
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	3 cut(s)	225, 344, 473
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	303, 372
TasI	AATT	4 cut(s)	131, 146, 207, 450
TatI	WGTACW	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	3 cut(s)	10, 185, 195
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	406
Van91I	CCANNNNNTGG	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	3 cut(s)	225, 344, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.