Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002709.1

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Forward (+)

76773 .. 79210

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002709.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggagaggcagcgtaaagaggaagaagtcaaaactcaatcctcgagaaaaggacaagaggcagagcaatcagtaatgaacagggctagtagtcctcaaacagggggtcagcaatctggtggaaccctgaaatcgttgaaggataaatttagccaggaggagaaagaagtcccagaagcatctggtttgaaaaccctgaaatctcttgattttcttaacacctatgctacatttgctgataagatttttggagtgaaaagtatagctgcatatcgcagcggtctggaaattagtacacatgtcactaggaaagatgttgaggaaggtctttctgaggtcatacaggctggaaagcctgttcacatatcaaataaaagttttatcgactatattttcactcgtagtttggaggttgctctactttttgacttgccaatgcaaatacatacaggttttggcgacaaagatttggacttgaggctatccaatccccttcatctccgggctgtgcttgaggccaagagattttctaaaagccgcatgttcttttacatgcatcctacccgttttcaaaggaagcatcatatcttgcctctgtttatccccaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

203

Amino Acids

23.14

Weight (kDa)

9.57

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	279, 538
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	139, 190, 572
AjnI	CCWGG	2 cut(s)	153, 605
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	1 cut(s)	516
ApeKI	GCWGC	3 cut(s)	10, 266, 276
ApoI	RAATTY	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AsuC2I	CCSGG	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	22, 253, 288
BciT130I	CCWGG	2 cut(s)	155, 607
BcnI	CCSGG	1 cut(s)	503
BfaI	CTAG	2 cut(s)	87, 306
BisI	GCNGC	4 cut(s)	11, 267, 277, 538
BlsI	GCNGC	4 cut(s)	12, 268, 278, 539
Bme1390I	CCNGG	3 cut(s)	155, 503, 607
BmeT110I	CYCGRG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	3 cut(s)	155, 503, 607
BmsI	GCATC	3 cut(s)	188, 565, 589
BpuEI	CTTGAG	2 cut(s)	496, 533
BpuMI	CCSGG	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	155, 607
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	22, 253, 288
BshFI	GGCC	1 cut(s)	518
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	518
BsoBI	CYCGRG	1 cut(s)	43
BspACI	CCGC	2 cut(s)	279, 538
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	605
Bst2UI	CCWGG	2 cut(s)	155, 607
BstDEI	CTNAG	1 cut(s)	333
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	2 cut(s)	155, 607
BstNSI	RCATGY	3 cut(s)	302, 544, 556
BstSCI	CCNGG	3 cut(s)	153, 501, 605
BstV1I	GCAGC	3 cut(s)	22, 253, 288
BsuRI	GGCC	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	3 cut(s)	299, 541, 553
CviJI	RGCY	9 cut(s)	86, 153, 266, 347, 355, 481, 506, 518, 537
CviKI_1	RGCY	9 cut(s)	86, 153, 266, 347, 355, 481, 506, 518, 537
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	153, 605
EcoT22I	ATGCAT	1 cut(s)	558
FaeI	CATG	3 cut(s)	302, 544, 556
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	298, 540, 552
Fnu4HI	GCNGC	4 cut(s)	11, 267, 277, 538
FokI	GGATG	1 cut(s)	543
Fsp4HI	GCNGC	4 cut(s)	11, 267, 277, 538
FspBI	CTAG	2 cut(s)	87, 306
GluI	GCNGC	4 cut(s)	11, 267, 277, 538
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	1 cut(s)	502
Hin1II	CATG	3 cut(s)	302, 544, 556
HpaII	CCGG	1 cut(s)	502
Hpy166II	GTNNAC	2 cut(s)	296, 361
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	3 cut(s)	45, 206, 284
Hpy8I	GTNNAC	2 cut(s)	296, 361
HpyAV	CCTTC	3 cut(s)	133, 317, 503
HpyCH4V	TGCA	3 cut(s)	269, 439, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	302, 544, 556
Lsp1109I	GCAGC	3 cut(s)	22, 253, 288
LweI	GCATC	3 cut(s)	188, 565, 589
MaeI	CTAG	2 cut(s)	87, 306
MaeIII	GTNAC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	35
MluCI	AATT	2 cut(s)	146, 288
Mph1103I	ATGCAT	1 cut(s)	558
MseI	TTAA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	3 cut(s)	155, 503, 607
MvaI	CCWGG	2 cut(s)	155, 607
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	503
NlaIII	CATG	3 cut(s)	302, 544, 556
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	3 cut(s)	302, 544, 556
PaeR7I	CTCGAG	1 cut(s)	43
PciI	ACATGT	1 cut(s)	298
PkrI	GCNGC	4 cut(s)	12, 268, 278, 539
PscI	ACATGT	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	153, 605
PspGI	CCWGG	2 cut(s)	153, 605
PspN4I	GGNNCC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	11, 267, 277, 538
ScrFI	CCNGG	3 cut(s)	155, 503, 607
SetI	ASST	7 cut(s)	224, 268, 328, 339, 414, 454, 611
SfaNI	GCATC	3 cut(s)	188, 565, 589
Sfr274I	CTCGAG	1 cut(s)	43
SlaI	CTCGAG	1 cut(s)	43
SmlI	CTYRAG	3 cut(s)	43, 475, 512
SmoI	CTYRAG	3 cut(s)	43, 475, 512
Sse9I	AATT	2 cut(s)	146, 288
SsiI	CCGC	2 cut(s)	279, 538
SspMI	CTAG	2 cut(s)	87, 306
StyD4I	CCNGG	3 cut(s)	153, 501, 605
TaqI	TCGA	2 cut(s)	44, 384
TasI	AATT	2 cut(s)	146, 288
TatI	WGTACW	1 cut(s)	293
TauI	GCSGC	1 cut(s)	540
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	3 cut(s)	10, 266, 276
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	92, 485
XagI	CCTNNNNNAGG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	3 cut(s)	302, 544, 556
XhoI	CTCGAG	1 cut(s)	43
XspI	CTAG	2 cut(s)	87, 306
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.