Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Forward (+)

64770902 .. 64771657

Gene Structure 756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21442

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTATATTTCCTGGCAGTTCATTGATCTTCCTGATAATCCTGCTGCTGCTGTTGGATTTCAGTTCAATCTTACTGCAAGGAGTCATGCTAATAAAAGACATCTGAGTTTTGTTAGTGGAACCCTAAAGAATGGAAGTACTTTGGATGATAGACCAGTTACATTCAGAGGGAGTAATACAAATATATTGAAATTCAGTTTATTTCCGCGGATATACCATAATCTACATGATCTAAGGCTCATCCAACCTTTGTTTCATGCGTTTGTACTGGGTTCATTCTTTAATGACACAAGTCAGCTCCAAGCATCCCTTCAAAGGCCTAAGGATGGAATACTTAACACCACATTGTACATCAACTTCCTCTCTGACTACATTGTGGAGATGGATAAGCAAAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

15.25

Weight (kDa)

9.1

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	208
AciI	CCGC	2 cut(s)	206, 208
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	3 cut(s)	139, 267, 350
AfiI	CCNNNNNNNGG	2 cut(s)	315, 326
AgsI	TTSAA	3 cut(s)	67, 190, 314
AjnI	CCWGG	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	4 cut(s)	237, 269, 294, 326
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	44, 47
ApoI	RAATTY	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	321
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
BbvI	GCAGC	2 cut(s)	31, 34
BccI	CCATC	2 cut(s)	320, 376
BciT130I	CCWGG	1 cut(s)	13
BisI	GCNGC	2 cut(s)	45, 48
BlsI	GCNGC	2 cut(s)	46, 49
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	13
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	278
BoxI	GACNNNNGTC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 326
Bse1I	ACTGG	2 cut(s)	155, 273
Bse21I	CCTNAGG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	4 cut(s)	151, 240, 305, 331
BseLI	CCNNNNNNNGG	2 cut(s)	315, 326
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	155, 273
BseXI	GCAGC	2 cut(s)	31, 34
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	315, 326
BsnI	GGCC	1 cut(s)	319
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	25, 229
BspACI	CCGC	2 cut(s)	206, 208
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	155, 273
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	25, 229
Bst2UI	CCWGG	1 cut(s)	13
BstAUI	TGTACA	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	104, 233, 321
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	4 cut(s)	151, 240, 305, 331
BstFNI	CGCG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	28, 232
BstMBI	GATC	2 cut(s)	25, 229
BstNI	CCWGG	1 cut(s)	13
BstPAI	GACNNNNGTC	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	11
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	31, 34
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	4 cut(s)	151, 240, 305, 331
Cfr42I	CCGCGG	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	138, 266, 349
CviAII	CATG	3 cut(s)	86, 227, 257
CviJI	RGCY	3 cut(s)	238, 298, 319
CviKI_1	RGCY	3 cut(s)	238, 298, 319
CviQI	GTAC	3 cut(s)	138, 266, 349
DdeI	CTNAG	3 cut(s)	104, 233, 321
DpnI	GATC	2 cut(s)	27, 231
DpnII	GATC	2 cut(s)	25, 229
Eco147I	AGGCCT	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	11
FaeI	CATG	3 cut(s)	89, 230, 260
FaiI	YATR	7 cut(s)	6, 87, 185, 214, 219, 228, 258
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	3 cut(s)	85, 226, 256
Fnu4HI	GCNGC	2 cut(s)	45, 48
FokI	GGATG	4 cut(s)	158, 227, 292, 338
Fsp4HI	GCNGC	2 cut(s)	45, 48
GluI	GCNGC	2 cut(s)	45, 48
HaeIII	GGCC	1 cut(s)	319
Hin1II	CATG	3 cut(s)	89, 230, 260
HinfI	GANTC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	105, 167, 367
Hpy188III	TCNNGA	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	77
HpyF3I	CTNAG	3 cut(s)	104, 233, 321
Hsp92II	CATG	3 cut(s)	89, 230, 260
KspI	CCGCGG	1 cut(s)	209
Kzo9I	GATC	2 cut(s)	25, 229
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	5 cut(s)	25, 45, 54, 168, 254
Lsp1109I	GCAGC	2 cut(s)	31, 34
LweI	GCATC	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	27, 231
MboI	GATC	2 cut(s)	25, 229
MboII	GAAGA	1 cut(s)	20
MluCI	AATT	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	2 cut(s)	34, 268
MnlI	CCTC	2 cut(s)	161, 371
MseI	TTAA	2 cut(s)	282, 336
MspA1I	CMGCKG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	208
NdeII	GATC	2 cut(s)	25, 229
NlaIII	CATG	3 cut(s)	89, 230, 260
NlaIV	GGNNCC	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	46, 49
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PshAI	GACNNNNGTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	121
RsaI	GTAC	3 cut(s)	139, 267, 350
RsaNI	GTAC	3 cut(s)	138, 266, 349
SacII	CCGCGG	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	282, 336
SatI	GCNGC	2 cut(s)	45, 48
Sau3AI	GATC	2 cut(s)	25, 229
ScaI	AGTACT	1 cut(s)	139
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	2 cut(s)	250, 300
SfaNI	GCATC	1 cut(s)	314
Sfr303I	CCGCGG	1 cut(s)	209
SgrBI	CCGCGG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	191
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	2 cut(s)	206, 208
SspI	AATATT	1 cut(s)	397
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	11
TasI	AATT	1 cut(s)	191
TatI	WGTACW	3 cut(s)	137, 265, 348
Tru1I	TTAA	2 cut(s)	282, 336
Tru9I	TTAA	2 cut(s)	282, 336
TseI	GCWGC	2 cut(s)	44, 47
TspDTI	ATGAA	3 cut(s)	10, 245, 264
XapI	RAATTY	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.