Rorug02G0609200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001442
Physical Location & Seq
Forward (+)
72604523 .. 72606961
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0609200.1

Sequence Viewer

Length: 1254 bp
ATGAACATCTATGGTAAAAGGGAGAGAGGTCTGAACATGAACAGACTCATGCCTTTCCTGCTTACTTCTTTAGCCATAGCCTCCATTTTCAGCTTCTTCCTTGCTTATTCCCCAAGCTCTTTTCCGATCACATCAAAACAAGCCCTTACTTCTGTTGAGAACCAGCCAGATGATGATAGTCCTAGCCATGCAGTACCAGTCAAGATGATCCCACCTCCAAAAAAGGAAGAGGAGTGTGACTTGTTTAAGGGTCAGTGGGTTCCGGATTTGAGAGGGCCATTGTATACGAATTCGAGCTGTAAGAGTATTCCGGAATCGAAGAATTGTTTCAAGAATGGGAGGATGGATAGGGATTTTCTGAATTGGAAATGGAAGCCGGAGAAATGTGAGCTGCCGGAGTTTGATCCCAAGGCGTTCTTGCAAATTGTTCGAGGGAAGAAGATGGCATTTGTTGGTGACTCTGTTGCTCGCAATCACGTTGAGTCTCTTCTATGCCTCTTGTCACAGGAGGAACTTCCCAAAGACATCTACAAGGATTCTGAAGACCGTTTCAGGACATGGTACTTTCCTCAACATGACTTCACCCTAATGAAATTGTGGTCCAAATATCTTATAGCCGCAGACGAGAGGATGGTTAATGGCACTGGTTCAGGCGTTTTTGATCTGCACATAGACAGAATCGATGATGAATGGGCAAAGCACCTTCCGGGTTTAGACTACGCCATCATCTCGGACGGGCATTGGTTTTTTCGGGTATTATACCTATACAAAGGCAAAAAACTCATAGGATGTGTCTATTGCAATCAACCCAATATTACCGGCTTGAACACTAGCAATGCAGTTCGCATGGCGTTTCGATCTGCATTTAAATACATTAGCAATTGCAAGAATTGCAAGGGCGGGCTTCTGACCTTGTTGAGGACATTTGCACCGGCACATTTTGAGAACGGGGCTTGGAACACTGGAGGATACTGCAATAGGACGAGTCCCTTACGTGAGGCACATGTTGATTTTACGAACTTTGATTGGGAAATGAGGAAGATTCAGATTGAGGAGATTGAAAGAGCAAGAAAAGAAGGGAAGAAGATTAAAGTTTTGGATATAACTAGGGCAATGTTGATGAGACCAGATGGGCACCCTGGACTTCACTGGGGAAATCAATGGATGAAGGGTTATAGTGACTGTGTTCACTGGTGCATGCCAGGCCCGGTTGATTACTGGAACAATTTTTTGATGGCACTTATCAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

417

Amino Acids

48.27

Weight (kDa)

8.77

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 77 - 130 5.4e-21 PMR5 N terminal Domain
PC-Esterase PF13839 131 - 413 4.6e-92 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1134
AccI GTMKAC 1 cut(s) 284
AccIII TCCGGA 2 cut(s) 262, 310
AciI CCGC 2 cut(s) 618, 900
AclWI GGATC 2 cut(s) 202, 398
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 2 cut(s) 195, 563
AfiI CCNNNNNNNGG 1 cut(s) 918
AflIII ACRYGT 1 cut(s) 1003
AgsI TTSAA 3 cut(s) 331, 826, 1061
AjnI CCWGG 2 cut(s) 1138, 1201
AluBI AGCT 4 cut(s) 93, 117, 297, 391
AluI AGCT 4 cut(s) 93, 117, 297, 391
Alw26I GTCTC 2 cut(s) 489, 1117
AlwI GGATC 2 cut(s) 202, 398
Aor13HI TCCGGA 2 cut(s) 262, 310
AoxI GGCC 2 cut(s) 275, 1204
ApeKI GCWGC 1 cut(s) 391
ApoI RAATTY 1 cut(s) 289
Asp700I GAANNNNTTC 1 cut(s) 326
AspS9I GGNCC 3 cut(s) 275, 600, 1205
AsuC2I CCSGG 2 cut(s) 708, 1208
AsuHPI GGTGA 2 cut(s) 467, 574
AvaII GGWCC 1 cut(s) 600
BaeGI GKGCMC 1 cut(s) 1137
BanI GGYRCC 1 cut(s) 1134
BbsI GAAGAC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 378
BccI CCATC 6 cut(s) 337, 436, 625, 731, 1124, 1228
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 2 cut(s) 1140, 1203
BciVI GTATCC 1 cut(s) 962
BcnI CCSGG 2 cut(s) 708, 1208
BcoDI GTCTC 2 cut(s) 489, 1117
BfaI CTAG 3 cut(s) 183, 831, 1107
BfuI GTATCC 1 cut(s) 962
BisI GCNGC 2 cut(s) 392, 618
BlsI GCNGC 2 cut(s) 393, 619
Bme1390I CCNGG 4 cut(s) 708, 1140, 1203, 1208
Bme18I GGWCC 1 cut(s) 600
BmgT120I GGNCC 3 cut(s) 275, 600, 1205
BmiI GGNNCC 2 cut(s) 261, 1136
BmrFI CCNGG 4 cut(s) 708, 1140, 1203, 1208
BmrI ACTGGG 1 cut(s) 1159
BmuI ACTGGG 1 cut(s) 1159
BpiI GAAGAC 1 cut(s) 549
BpmI CTGGAG 1 cut(s) 984
BpuMI CCSGG 2 cut(s) 708, 1208
Bsa29I ATCGAT 1 cut(s) 681
BsaAI YACGTR 1 cut(s) 995
BsaI GGTCTC 1 cut(s) 1117
BsaJI CCNNGG 2 cut(s) 408, 1138
BsaWI WCCGGW 2 cut(s) 262, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 918
Bse118I RCCGGY 2 cut(s) 818, 931
Bse1I ACTGG 6 cut(s) 197, 649, 967, 1154, 1196, 1223
Bse3DI GCAATG 2 cut(s) 841, 1119
BseAI TCCGGA 2 cut(s) 262, 310
BseBI CCWGG 2 cut(s) 1140, 1203
BseCI ATCGAT 1 cut(s) 681
BseDI CCNNGG 2 cut(s) 408, 1138
BseGI GGATG 4 cut(s) 348, 636, 794, 1170
BseLI CCNNNNNNNGG 1 cut(s) 918
BseMI GCAATG 2 cut(s) 841, 1119
BseNI ACTGG 6 cut(s) 197, 649, 967, 1154, 1196, 1223
BseRI GAGGAG 2 cut(s) 245, 1067
BseSI GKGCMC 1 cut(s) 1137
BseXI GCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 650
BshFI GGCC 2 cut(s) 277, 1206
BshNI GGYRCC 1 cut(s) 1134
BshVI ATCGAT 1 cut(s) 681
BsiSI CCGG 8 cut(s) 263, 311, 377, 395, 707, 819, 932, 1208
BslFI GGGAC 1 cut(s) 972
BslI CCNNNNNNNGG 1 cut(s) 918
BsmAI GTCTC 2 cut(s) 489, 1117
BsmFI GGGAC 1 cut(s) 972
BsnI GGCC 2 cut(s) 277, 1206
Bso31I GGTCTC 1 cut(s) 1117
Bsp1286I GDGCHC 1 cut(s) 1137
Bsp13I TCCGGA 2 cut(s) 262, 310
Bsp143I GATC 5 cut(s) 126, 207, 403, 661, 857
BspACI CCGC 2 cut(s) 618, 900
BspANI GGCC 2 cut(s) 277, 1206
BspDI ATCGAT 1 cut(s) 681
BspEI TCCGGA 2 cut(s) 262, 310
BspLI GGNNCC 2 cut(s) 261, 1136
BspPI GGATC 2 cut(s) 202, 398
BspT107I GGYRCC 1 cut(s) 1134
BspTNI GGTCTC 1 cut(s) 1117
BsrDI GCAATG 2 cut(s) 841, 1119
BsrFI RCCGGY 2 cut(s) 818, 931
BsrI ACTGG 6 cut(s) 197, 649, 967, 1154, 1196, 1223
BssAI RCCGGY 2 cut(s) 818, 931
BssECI CCNNGG 2 cut(s) 408, 1138
BssMI GATC 5 cut(s) 126, 207, 403, 661, 857
BssNAI GTATAC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 408
Bst1107I GTATAC 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 1140, 1203
Bst4CI ACNGT 2 cut(s) 548, 1184
Bst6I CTCTTC 2 cut(s) 222, 492
BstAPI GCANNNNNTGC 1 cut(s) 891
BstBAI YACGTR 1 cut(s) 995
BstC8I GCNNGC 3 cut(s) 469, 902, 1199
BstENI CCTNNNNNAGG 1 cut(s) 916
BstF5I GGATG 4 cut(s) 348, 636, 794, 1170
BstKTI GATC 5 cut(s) 129, 210, 406, 664, 860
BstMAI GTCTC 2 cut(s) 489, 1117
BstMBI GATC 5 cut(s) 126, 207, 403, 661, 857
BstMWI GCNNNNNNNGC 3 cut(s) 58, 891, 1203
BstNI CCWGG 2 cut(s) 1140, 1203
BstNSI RCATGY 2 cut(s) 1007, 1201
BstSCI CCNGG 4 cut(s) 706, 1138, 1201, 1206
BstSLI GKGCMC 1 cut(s) 1137
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 1 cut(s) 549
BstZ17I GTATAC 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 681
BsuI GTATCC 1 cut(s) 962
BsuRI GGCC 2 cut(s) 277, 1206
BsuTUI ATCGAT 1 cut(s) 681
BtsCI GGATG 4 cut(s) 348, 636, 794, 1170
BtsIMutI CAGTG 5 cut(s) 260, 642, 960, 1147, 1189
Cac8I GCNNGC 3 cut(s) 469, 902, 1199
Cfr10I RCCGGY 2 cut(s) 818, 931
Cfr13I GGNCC 3 cut(s) 275, 600, 1205
ClaI ATCGAT 1 cut(s) 681
Csp6I GTAC 2 cut(s) 194, 562
CviAII CATG 8 cut(s) 37, 49, 188, 558, 575, 847, 1004, 1198
CviQI GTAC 2 cut(s) 194, 562
DpnI GATC 5 cut(s) 128, 209, 405, 663, 859
DpnII GATC 5 cut(s) 126, 207, 403, 661, 857
DraI TTTAAA 1 cut(s) 868
Eam1104I CTCTTC 2 cut(s) 222, 492
EarI CTCTTC 2 cut(s) 222, 492
Eco130I CCWWGG 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 1117
Eco47I GGWCC 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 561
EcoNI CCTNNNNNAGG 1 cut(s) 916
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 1138, 1201
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 8 cut(s) 40, 52, 191, 561, 578, 850, 1007, 1201
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 972
FatI CATG 8 cut(s) 36, 48, 187, 557, 574, 846, 1003, 1197
FauI CCCGC 1 cut(s) 893
FblI GTMKAC 1 cut(s) 284
Fnu4HI GCNGC 2 cut(s) 392, 618
FokI GGATG 4 cut(s) 355, 643, 801, 1177
Fsp4HI GCNGC 2 cut(s) 392, 618
FspBI CTAG 3 cut(s) 183, 831, 1107
GluI GCNGC 2 cut(s) 392, 618
GsuI CTGGAG 1 cut(s) 984
HaeIII GGCC 2 cut(s) 277, 1206
HapII CCGG 8 cut(s) 263, 311, 377, 395, 707, 819, 932, 1208
Hin1II CATG 8 cut(s) 40, 52, 191, 561, 578, 850, 1007, 1201
HinfI GANTC 8 cut(s) 45, 314, 458, 482, 536, 678, 985, 1042
HpaII CCGG 8 cut(s) 263, 311, 377, 395, 707, 819, 932, 1208
HphI GGTGA 2 cut(s) 467, 574
Hpy166II GTNNAC 2 cut(s) 285, 1189
Hpy188I TCNGA 8 cut(s) 33, 126, 360, 541, 733, 909, 1047, 1247
Hpy188III TCNNGA 5 cut(s) 202, 263, 311, 331, 553
Hpy8I GTNNAC 2 cut(s) 285, 1189
HpyAV CCTTC 3 cut(s) 713, 1070, 1162
HpyCH4III ACNGT 2 cut(s) 548, 1184
HpyCH4IV ACGT 2 cut(s) 477, 994
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 891, 1203
HpySE526I ACGT 2 cut(s) 477, 994
Hsp92II CATG 8 cut(s) 40, 52, 191, 561, 578, 850, 1007, 1201
Kpn2I TCCGGA 2 cut(s) 262, 310
Kzo9I GATC 5 cut(s) 126, 207, 403, 661, 857
Lsp1109I GCAGC 1 cut(s) 378
MaeI CTAG 3 cut(s) 183, 831, 1107
MaeII ACGT 2 cut(s) 477, 994
MaeIII GTNAC 4 cut(s) 236, 455, 501, 1178
MalI GATC 5 cut(s) 128, 209, 405, 663, 859
MboI GATC 5 cut(s) 126, 207, 403, 661, 857
MfeI CAATTG 1 cut(s) 880
MhlI GDGCHC 1 cut(s) 1137
MluCI AATT 9 cut(s) 289, 322, 361, 423, 593, 880, 889, 1225, 1249
MlyI GAGTC 4 cut(s) 39, 452, 491, 994
MroI TCCGGA 2 cut(s) 262, 310
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 5 cut(s) 246, 636, 867, 1089, 1252
MslI CAYNNNNRTG 1 cut(s) 587
MspI CCGG 8 cut(s) 263, 311, 377, 395, 707, 819, 932, 1208
MspR9I CCNGG 4 cut(s) 708, 1140, 1203, 1208
MunI CAATTG 1 cut(s) 880
MvaI CCWGG 2 cut(s) 1140, 1203
MwoI GCNNNNNNNGC 3 cut(s) 58, 891, 1203
NciI CCSGG 2 cut(s) 708, 1208
NdeII GATC 5 cut(s) 126, 207, 403, 661, 857
NlaIII CATG 8 cut(s) 40, 52, 191, 561, 578, 850, 1007, 1201
NlaIV GGNNCC 2 cut(s) 261, 1136
NmuCI GTSAC 4 cut(s) 236, 455, 501, 1178
NspI RCATGY 2 cut(s) 1007, 1201
PaeI GCATGC 1 cut(s) 1201
PciI ACATGT 1 cut(s) 1003
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 4 cut(s) 314, 536, 678, 1042
PkrI GCNGC 2 cut(s) 393, 619
PleI GAGTC 4 cut(s) 39, 452, 490, 993
PpsI GAGTC 4 cut(s) 39, 452, 490, 993
Ppu21I YACGTR 1 cut(s) 995
PscI ACATGT 1 cut(s) 1003
Psp6I CCWGG 2 cut(s) 1138, 1201
PspGI CCWGG 2 cut(s) 1138, 1201
PspN4I GGNNCC 2 cut(s) 261, 1136
PspPI GGNCC 3 cut(s) 275, 600, 1205
RsaI GTAC 2 cut(s) 195, 563
RsaNI GTAC 2 cut(s) 194, 562
RseI CAYNNNNRTG 1 cut(s) 587
SaqAI TTAA 5 cut(s) 246, 636, 867, 1089, 1252
SatI GCNGC 2 cut(s) 392, 618
Sau3AI GATC 5 cut(s) 126, 207, 403, 661, 857
Sau96I GGNCC 3 cut(s) 275, 600, 1205
SchI GAGTC 4 cut(s) 39, 452, 491, 994
ScrFI CCNGG 4 cut(s) 708, 1140, 1203, 1208
SduI GDGCHC 1 cut(s) 1137
SinI GGWCC 1 cut(s) 600
SmiI ATTTAAAT 1 cut(s) 868
SmiMI CAYNNNNRTG 1 cut(s) 587
SphI GCATGC 1 cut(s) 1201
Sse9I AATT 9 cut(s) 289, 322, 361, 423, 593, 880, 889, 1225, 1249
SsiI CCGC 2 cut(s) 618, 900
SspI AATATT 1 cut(s) 814
SspMI CTAG 3 cut(s) 183, 831, 1107
StyD4I CCNGG 4 cut(s) 706, 1138, 1201, 1206
StyI CCWWGG 1 cut(s) 408
SwaI ATTTAAAT 1 cut(s) 868
TaaI ACNGT 2 cut(s) 548, 1184
TaiI ACGT 2 cut(s) 480, 997
TaqI TCGA 5 cut(s) 293, 317, 430, 681, 856
TasI AATT 9 cut(s) 289, 322, 361, 423, 593, 880, 889, 1225, 1249
TauI GCSGC 1 cut(s) 620
TfiI GAWTC 4 cut(s) 314, 536, 678, 1042
Tru1I TTAA 5 cut(s) 246, 636, 867, 1089, 1252
Tru9I TTAA 5 cut(s) 246, 636, 867, 1089, 1252
TscAI CASTG 5 cut(s) 260, 649, 967, 1154, 1196
TseFI GTSAC 4 cut(s) 236, 455, 501, 1178
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 4 cut(s) 236, 455, 501, 1178
TspDTI ATGAA 5 cut(s) 17, 53, 605, 702, 1181
TspRI CASTG 5 cut(s) 260, 649, 967, 1154, 1196
VpaK11BI GGWCC 1 cut(s) 600
XagI CCTNNNNNAGG 1 cut(s) 916
XapI RAATTY 1 cut(s) 289
XceI RCATGY 2 cut(s) 1007, 1201
XmiI GTMKAC 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 3 cut(s) 183, 831, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.