Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Reverse (-)

2250428 .. 2251536

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0016900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGTGATAGGTTGACCGGAACGGTGAAGTGGTTCAATGACCAGAAGGGGTTCGGCTTCATCACCCCGGCGGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCGATCCGAACCGAAGGCTTCCGGACTCTCGGCGACGGCGAGTCCGTCGAGTTCCAGATCGAGACCGACAACGACGGCCGCACCAAGGCCGTTGATGTGACCGGCCCGGAGGAGGGTCCCGTTCAGGGGAGAGGATCCGGAGGCGGCGGCCGTGGCGGTGGAGGCCGTGGTGGCGGGAGAGGTGGCCGTGGAGGCGGGAGCTACGGCGGTGGCGGAGGCTATGGCGGCGGGGGAGGTTATGGAGGCGGTGGCGGTGGATATGGAGGCGGTGGAGGTGGGAACTGTTTTAAGTGTGGTGAGGCTGGACACATGGCGAGGGACTGCTCGGAGGGAGGTGGTGGTAGCTATGGAGGCGGCGGCCGAGGTGGAGGCGGTTACGGCGGCGGAGGCGGTGGGAGGTACTCGGGAGGCGGAGGCGGCGGCGGCGCTGGTGCTTCCAACGGCTGCTATCAGTGTGGCGAAACTGGTCATTTCGCAAGGGAGTGCCCTAACAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

201

Amino Acids

19.02

Weight (kDa)

5.92

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	6 - 70	1.4e-26	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	129 - 144	4.2e-07	Zinc knuckle
zf-CCHC	PF00098	183 - 199	1.8e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	126, 242
AclWI	GGATC	4 cut(s)	93, 103, 234, 247
AcoI	YGGCCR	4 cut(s)	181, 253, 289, 463
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	7 cut(s)	74, 190, 217, 218, 230, 231, 599
AgsI	TTSAA	1 cut(s)	37
AhdI	GACNNNNNGTC	1 cut(s)	145
AluBI	AGCT	2 cut(s)	306, 450
AluI	AGCT	2 cut(s)	306, 450
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	4 cut(s)	93, 103, 234, 247
AlwNI	CAGNNNCTG	1 cut(s)	603
Ama87I	CYCGRG	1 cut(s)	508
Aor13HI	TCCGGA	2 cut(s)	126, 242
AoxI	GGCC	7 cut(s)	181, 192, 208, 253, 268, 289, 463
ApeKI	GCWGC	1 cut(s)	549
Asp700I	GAANNNNTTC	2 cut(s)	32, 50
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	2 cut(s)	209, 221
AsuC2I	CCSGG	2 cut(s)	68, 212
AsuHPI	GGTGA	3 cut(s)	37, 55, 413
AvaI	CYCGRG	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	593
BamHI	GGATCC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	536
BcnI	CCSGG	2 cut(s)	68, 212
BcoDI	GTCTC	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	534
BglI	GCCNNNNNGGC	2 cut(s)	276, 297
Bme1390I	CCNGG	2 cut(s)	68, 212
Bme18I	GGWCC	1 cut(s)	221
BmeRI	GACNNNNNGTC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	508
BmgT120I	GGNCC	2 cut(s)	209, 221
BmiI	GGNNCC	3 cut(s)	222, 223, 241
BmrFI	CCNGG	2 cut(s)	68, 212
BpuMI	CCSGG	2 cut(s)	68, 212
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	6 cut(s)	66, 189, 256, 271, 292, 466
BsaWI	WCCGGW	3 cut(s)	17, 126, 242
Bsc4I	CCNNNNNNNGG	7 cut(s)	74, 190, 217, 218, 230, 231, 599
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	100, 574
BseAI	TCCGGA	2 cut(s)	126, 242
BseDI	CCNNGG	6 cut(s)	66, 189, 256, 271, 292, 466
BseLI	CCNNNNNNNGG	7 cut(s)	74, 190, 217, 218, 230, 231, 599
BseNI	ACTGG	2 cut(s)	100, 574
BseRI	GAGGAG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	593
BseX3I	CGGCCG	3 cut(s)	181, 253, 463
BseXI	GCAGC	1 cut(s)	536
Bsh1285I	CGRYCG	3 cut(s)	184, 256, 466
BshFI	GGCC	7 cut(s)	183, 194, 210, 255, 270, 291, 465
BsiEI	CGRYCG	3 cut(s)	184, 256, 466
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	6 cut(s)	18, 68, 127, 207, 212, 243
BslFI	GGGAC	2 cut(s)	207, 437
BslI	CCNNNNNNNGG	7 cut(s)	74, 190, 217, 218, 230, 231, 599
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	207, 437
BsnI	GGCC	7 cut(s)	183, 194, 210, 255, 270, 291, 465
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp13I	TCCGGA	2 cut(s)	126, 242
Bsp143I	GATC	4 cut(s)	85, 108, 162, 239
BspANI	GGCC	7 cut(s)	183, 194, 210, 255, 270, 291, 465
BspEI	TCCGGA	2 cut(s)	126, 242
BspLI	GGNNCC	3 cut(s)	222, 223, 241
BspPI	GGATC	4 cut(s)	93, 103, 234, 247
BspTNI	GGTCTC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	100, 574
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	6 cut(s)	66, 189, 256, 271, 292, 466
BssMI	GATC	4 cut(s)	85, 108, 162, 239
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	25, 389
Bst6I	CTCTTC	1 cut(s)	95
BstDSI	CCRYGG	3 cut(s)	256, 271, 292
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	4 cut(s)	88, 111, 165, 242
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	85, 108, 162, 239
BstMCI	CGRYCG	3 cut(s)	184, 256, 466
BstSCI	CCNGG	2 cut(s)	66, 210
BstSLI	GKGCMC	1 cut(s)	593
BstV1I	GCAGC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	85, 239
BstYI	RGATCY	2 cut(s)	85, 239
BstZI	CGGCCG	3 cut(s)	181, 253, 463
BsuRI	GGCC	7 cut(s)	183, 194, 210, 255, 270, 291, 465
BtgI	CCRYGG	3 cut(s)	256, 271, 292
BtsIMutI	CAGTG	1 cut(s)	563
CaiI	CAGNNNCTG	1 cut(s)	603
CfoI	GCGC	1 cut(s)	533
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	209, 221
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	1 cut(s)	415
CviQI	GTAC	1 cut(s)	505
DpnI	GATC	4 cut(s)	87, 110, 164, 241
DpnII	GATC	4 cut(s)	85, 108, 162, 239
DriI	GACNNNNNGTC	1 cut(s)	145
EaeI	YGGCCR	4 cut(s)	181, 253, 289, 463
EagI	CGGCCG	3 cut(s)	181, 253, 463
Eam1104I	CTCTTC	1 cut(s)	95
Eam1105I	GACNNNNNGTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	4 cut(s)	86, 333, 504, 531
EclXI	CGGCCG	3 cut(s)	181, 253, 463
Eco130I	CCWWGG	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	221
Eco52I	CGGCCG	3 cut(s)	181, 253, 463
Eco88I	CYCGRG	1 cut(s)	508
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	418
FaiI	YATR	5 cut(s)	327, 345, 366, 416, 453
FaqI	GGGAC	2 cut(s)	207, 437
FatI	CATG	1 cut(s)	414
FauI	CCCGC	3 cut(s)	272, 293, 326
GlaI	GCGC	1 cut(s)	532
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	7 cut(s)	183, 194, 210, 255, 270, 291, 465
HapII	CCGG	6 cut(s)	18, 68, 127, 207, 212, 243
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	1 cut(s)	418
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	130, 146
HpaII	CCGG	6 cut(s)	18, 68, 127, 207, 212, 243
HphI	GGTGA	3 cut(s)	37, 55, 413
Hpy166II	GTNNAC	2 cut(s)	15, 97
Hpy188I	TCNGA	2 cut(s)	113, 433
Hpy188III	TCNNGA	5 cut(s)	127, 160, 166, 243, 510
Hpy8I	GTNNAC	2 cut(s)	15, 97
Hpy99I	CGWCG	3 cut(s)	143, 155, 182
HpyAV	CCTTC	2 cut(s)	40, 113
HpyCH4III	ACNGT	2 cut(s)	25, 389
Hsp92II	CATG	1 cut(s)	418
HspAI	GCGC	1 cut(s)	531
KflI	GGGWCCC	1 cut(s)	221
Kpn2I	TCCGGA	2 cut(s)	126, 242
Kzo9I	GATC	4 cut(s)	85, 108, 162, 239
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	1 cut(s)	536
MaeIII	GTNAC	2 cut(s)	202, 479
MalI	GATC	4 cut(s)	87, 110, 164, 241
MboI	GATC	4 cut(s)	85, 108, 162, 239
MboII	GAAGA	1 cut(s)	82
MflI	RGATCY	2 cut(s)	85, 239
MhlI	GDGCHC	1 cut(s)	593
MlyI	GAGTC	2 cut(s)	124, 155
MmeI	TCCRAC	1 cut(s)	567
MroI	TCCGGA	2 cut(s)	126, 242
MroXI	GAANNNNTTC	2 cut(s)	32, 50
MseI	TTAA	1 cut(s)	393
MspI	CCGG	6 cut(s)	18, 68, 127, 207, 212, 243
MspR9I	CCNGG	2 cut(s)	68, 212
NciI	CCSGG	2 cut(s)	68, 212
NdeII	GATC	4 cut(s)	85, 108, 162, 239
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	3 cut(s)	222, 223, 241
NmeAIII	GCCGAG	2 cut(s)	114, 491
NmuCI	GTSAC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 147
PdmI	GAANNNNTTC	2 cut(s)	32, 50
PleI	GAGTC	2 cut(s)	124, 154
PpsI	GAGTC	2 cut(s)	124, 154
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	3 cut(s)	222, 223, 241
PspPI	GGNCC	2 cut(s)	209, 221
PspPPI	RGGWCCY	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	603
PsuI	RGATCY	2 cut(s)	85, 239
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
SaqAI	TTAA	1 cut(s)	393
Sau3AI	GATC	4 cut(s)	85, 108, 162, 239
Sau96I	GGNCC	2 cut(s)	209, 221
SchI	GAGTC	2 cut(s)	124, 155
ScrFI	CCNGG	2 cut(s)	68, 212
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	9 cut(s)	14, 289, 308, 343, 382, 442, 452, 472, 506
SinI	GGWCC	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	66, 210
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	25, 389
TaqI	TCGA	3 cut(s)	107, 153, 165
TaqII	GACCGA	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	563
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	549
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	597
XmnI	GAANNNNTTC	2 cut(s)	32, 50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.