Rroxscaffold_6G00426360

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
47116756 .. 47122014
5259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426360.1

Sequence Viewer

Length: 1824 bp
ATGAGCTGCCCAGCAAACAGCTTCAGCTACAATGGAAGCCACTGTGCTTGTGCAGTTGGGTATCTTCAGAACCGGACCAGCCACGCCTGCGTCCTCTTCACGGCTAACTCCACCATCTCCACCGACGGCGGCGTCTCCGACGACTCTTTCGCCTTTGGCATACCGCAGAGCATCTTCTCTTTTGACTCCATCAAAAAGTTCACGCAATCCCAAGCCGTGTTCTTGGAGGCCACGCTTGTGTTGCTGCTTTCTTGGTTTGTGTTCTGCTTGTTTCTGAGGTGTACCAAGGTTGGGAATGATGGGAGGAGCATCTGGTTTAGGCTGAGATGGTGGGTTAGCAGATTGGATGTTTGCTTTGCCACTAGGCATTGGCTGGATGATCAAAAGATGGTTAAGAAACGGAAAACAGAACTTGGTGGAATGTTTTCAACAGCAAGCTGGATACTCTTTATTGGTTTGTTTGCTGCGTTGCTCTACCAAATCATAACAAAGAGAAGTATCGAGGTACATAATGTCAGAGCATCAAATGCACCCGACTTGGCCTTGTTCAACAATGACCTGGAATTTAACATAACAGCTATTTCTAGCATGAGCTGTTCAAACTTACGTGATCTTGGTACTTTGGTTACTGGAAATCCTGGCTTCATTGACTACAGAGTGGCTCCTCTGTCAAAATTTGGGAACTACTCATGTCAAAATACAAGTGGAGGACCAAGGATAACTCTTAGGTGCAATAGTTGTCAACCAATTCAAGACAATATGTATATTTCCTGGCAGTTCATTGATCTTCCTGATAATCCTGCTGCTGCTGTTGGATTTCAGTTCAATCTTACTACAAGGAGTCATGCTAATAAAAGACATCTGAGTTTTGTTAGTGGAACCCTAAAGAATGGAAGTACTTTGGATGATAGACCAGTTACATTCAGAGGGAGTAATACAAATATATTGAAATTCAGTTTATTTCCACGGATATACCATAATCTACATGATCTAAGGCTCATCCAACCTTTGTTTCATGCGTTTGTACCGGGTTCATTCTTTAATGACACAAGTCAGCTCCAAGCATCCCTTCAAAGGCCTAAGGATGGAATACTTAACACCACATTGTACATCAACTTCCTCTCTGACTACATTGTGGAGATAGATAAGCAAAATATTATGGGTCCTGTGAGCTTCCTTGCTGATCTTGGTGGCTTGTATTGCATCTCCATTGGCATATTTTTCTACCTTCTGGTGCAATTGAGGAAATATGTGATGTACACATGGAACTGCAAAGCATTGGATGATTACTATGAGAGCACAAACAACAGATCAGGTTGCACTGGTTGCGGTACACAACCAATACACCGAAATGGGACATCACAGAAGCGAATGCACCGAGAAGCAGATACCATTAATTTTAACAGGAAACTCAGCTTACATAACAAGAAGACTGTGGTTCAAGAGTGCTTGGACACTGTTGGTGATGTGGAATTTTATACATCGGGAACTAGAGTAAACCCTCCGGAAAGTTCATCAGATTCTGCTGCTGGAGTTGGACCTCATCTGCAAAGTGAATTACTTGCCTCTACAAGGAATGGAAAACAGCAAGGTGTTGCTTCATGCGAGCAAGATTCGTCCCTGCCTAAAGCATCATCTTTCACAAATGATGATATCATTCCTCCACCCCTTCGCTTGGACCCTGCTGAAATGGATATGTCTGATGTTCAGAAGAATCTTAAAGGTTTGTACGAGTACAATGTGATGCTTAGGGAAAAATTAGTAGAGGCTCAGTCTTTGTTCCATTCTTTAGCTACAAACTCTTCAACAGAAGTCCAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

607

Amino Acids

67.92

Weight (kDa)

8.22

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccIII TCCGGA 1 cut(s) 1504
AciI CCGC 3 cut(s) 129, 164, 1329
AcsI RAATTY 4 cut(s) 563, 674, 950, 1472
AcuI CTGAAG 2 cut(s) 7, 50
AcyI GRCGYC 1 cut(s) 132
AfiI CCNNNNNNNGG 6 cut(s) 100, 291, 1074, 1085, 1572, 1675
AgsI TTSAA 9 cut(s) 429, 550, 600, 752, 826, 949, 1073, 1442, 1806
AjnI CCWGG 3 cut(s) 558, 637, 770
AjuI GAANNNNNNNTTGG 4 cut(s) 996, 1028, 1053, 1085
AleI CACNNNNGTG 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 1301
Alw26I GTCTC 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 1523
Aor13HI TCCGGA 1 cut(s) 1504
AoxI GGCC 3 cut(s) 228, 540, 1076
ApeKI GCWGC 6 cut(s) 6, 244, 464, 803, 806, 1526
ApoI RAATTY 4 cut(s) 563, 674, 950, 1472
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AseI ATTAAT 1 cut(s) 1395
Asp700I GAANNNNTTC 1 cut(s) 424
AspS9I GGNCC 5 cut(s) 75, 710, 1163, 1538, 1678
AsuC2I CCSGG 1 cut(s) 1029
AsuHPI GGTGA 1 cut(s) 1475
AvaII GGWCC 5 cut(s) 75, 710, 1163, 1538, 1678
AxyI CCTNAGG 1 cut(s) 1080
BaeI ACNNNNGTAYC 2 cut(s) 609, 642
BarI GAAGNNNNNNTAC 2 cut(s) 1100, 1132
BbsI GAAGAC 1 cut(s) 1436
Bbv12I GWGCWC 1 cut(s) 1301
BbvI GCAGC 5 cut(s) 231, 451, 790, 793, 1513
BccI CCATC 6 cut(s) 122, 197, 293, 321, 382, 1079
BceAI ACGGC 3 cut(s) 117, 142, 200
BciT130I CCWGG 3 cut(s) 560, 639, 772
BciVI GTATCC 1 cut(s) 435
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 1 cut(s) 1029
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 3 cut(s) 363, 585, 1491
BfmI CTRYAG 1 cut(s) 652
BfuI GTATCC 1 cut(s) 435
BisI GCNGC 7 cut(s) 7, 130, 245, 465, 804, 807, 1527
BlsI GCNGC 7 cut(s) 8, 131, 246, 466, 805, 808, 1528
BmcAI AGTACT 1 cut(s) 898
Bme1390I CCNGG 4 cut(s) 560, 639, 772, 1029
Bme18I GGWCC 5 cut(s) 75, 710, 1163, 1538, 1678
BmgT120I GGNCC 5 cut(s) 75, 710, 1163, 1538, 1678
BmiI GGNNCC 4 cut(s) 663, 880, 1164, 1680
BmrFI CCNGG 4 cut(s) 560, 639, 772, 1029
BmsI GCATC 7 cut(s) 180, 318, 530, 1073, 1212, 1640, 1734
BoxI GACNNNNGTC 1 cut(s) 1050
BpiI GAAGAC 1 cut(s) 1436
BpmI CTGGAG 1 cut(s) 1551
Bpu10I CCTNAGC 1 cut(s) 1748
BpuMI CCSGG 1 cut(s) 1029
BsaAI YACGTR 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 285, 713, 965
BsaWI WCCGGW 2 cut(s) 72, 1504
Bsc4I CCNNNNNNNGG 6 cut(s) 100, 291, 1074, 1085, 1572, 1675
Bse1I ACTGG 3 cut(s) 634, 914, 1327
Bse21I CCTNAGG 1 cut(s) 1080
BseAI TCCGGA 1 cut(s) 1504
BseBI CCWGG 3 cut(s) 560, 639, 772
BseDI CCNNGG 3 cut(s) 285, 713, 965
BseGI GGATG 7 cut(s) 352, 382, 910, 999, 1064, 1090, 1288
BseLI CCNNNNNNNGG 6 cut(s) 100, 291, 1074, 1085, 1572, 1675
BseMII CTCAG 5 cut(s) 266, 314, 854, 1426, 1784
BseNI ACTGG 3 cut(s) 634, 914, 1327
BseRI GAGGAG 2 cut(s) 319, 654
BseXI GCAGC 5 cut(s) 231, 451, 790, 793, 1513
BseYI CCCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 3 cut(s) 230, 542, 1078
BsiHKAI GWGCWC 1 cut(s) 1301
BsiSI CCGG 3 cut(s) 73, 1028, 1505
BslFI GGGAC 2 cut(s) 1369, 1603
BslI CCNNNNNNNGG 6 cut(s) 100, 291, 1074, 1085, 1572, 1675
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 1369, 1603
BsmI GAATGC 1 cut(s) 1377
BsnI GGCC 3 cut(s) 230, 542, 1078
Bsp1286I GDGCHC 1 cut(s) 1301
Bsp13I TCCGGA 1 cut(s) 1504
Bsp1407I TGTACA 2 cut(s) 1107, 1257
Bsp143I GATC 6 cut(s) 379, 610, 784, 988, 1183, 1310
BspACI CCGC 3 cut(s) 129, 164, 1329
BspANI GGCC 3 cut(s) 230, 542, 1078
BspCNI CTCAG 5 cut(s) 267, 315, 855, 1425, 1783
BspEI TCCGGA 1 cut(s) 1504
BspLI GGNNCC 4 cut(s) 663, 880, 1164, 1680
BsrGI TGTACA 2 cut(s) 1107, 1257
BsrI ACTGG 3 cut(s) 634, 914, 1327
BssECI CCNNGG 3 cut(s) 285, 713, 965
BssMI GATC 6 cut(s) 379, 610, 784, 988, 1183, 1310
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 2 cut(s) 285, 713
Bst2UI CCWGG 3 cut(s) 560, 639, 772
Bst4CI ACNGT 3 cut(s) 44, 1435, 1459
Bst6I CTCTTC 2 cut(s) 101, 1807
BstACI GRCGYC 1 cut(s) 132
BstAPI GCANNNNNTGC 2 cut(s) 527, 1326
BstAUI TGTACA 2 cut(s) 1107, 1257
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 3 cut(s) 88, 436, 1607
BstDEI CTNAG 9 cut(s) 275, 323, 725, 863, 992, 1080, 1412, 1748, 1770
BstDSI CCRYGG 1 cut(s) 965
BstENI CCTNNNNNAGG 1 cut(s) 1570
BstF5I GGATG 7 cut(s) 352, 382, 910, 999, 1064, 1090, 1288
BstKTI GATC 6 cut(s) 382, 613, 787, 991, 1186, 1313
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 6 cut(s) 379, 610, 784, 988, 1183, 1310
BstMWI GCNNNNNNNGC 5 cut(s) 87, 241, 527, 1200, 1326
BstNI CCWGG 3 cut(s) 560, 639, 772
BstPAI GACNNNNGTC 1 cut(s) 1050
BstSCI CCNGG 4 cut(s) 558, 637, 770, 1027
BstSFI CTRYAG 1 cut(s) 652
BstV1I GCAGC 5 cut(s) 231, 451, 790, 793, 1513
BstV2I GAAGAC 1 cut(s) 1436
Bsu36I CCTNAGG 1 cut(s) 1080
BsuI GTATCC 1 cut(s) 435
BsuRI GGCC 3 cut(s) 230, 542, 1078
BtgI CCRYGG 1 cut(s) 965
BtsCI GGATG 7 cut(s) 352, 382, 910, 999, 1064, 1090, 1288
BtsIMutI CAGTG 3 cut(s) 40, 1320, 1455
Cac8I GCNNGC 3 cut(s) 88, 436, 1607
CaiI CAGNNNCTG 1 cut(s) 1523
Cfr13I GGNCC 5 cut(s) 75, 710, 1163, 1538, 1678
CseI GACGC 2 cut(s) 79, 121
CspCI CAANNNNNGTGG 2 cut(s) 29, 64
CviAII CATG 7 cut(s) 589, 690, 845, 986, 1016, 1263, 1602
DdeI CTNAG 9 cut(s) 275, 323, 725, 863, 992, 1080, 1412, 1748, 1770
DpnI GATC 6 cut(s) 381, 612, 786, 990, 1185, 1312
DpnII GATC 6 cut(s) 379, 610, 784, 988, 1183, 1310
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 101, 1807
EarI CTCTTC 2 cut(s) 101, 1807
Eco130I CCWWGG 2 cut(s) 285, 713
Eco147I AGGCCT 1 cut(s) 1078
Eco32I GATATC 1 cut(s) 1654
Eco47I GGWCC 5 cut(s) 75, 710, 1163, 1538, 1678
Eco57I CTGAAG 2 cut(s) 7, 50
Eco81I CCTNAGG 1 cut(s) 1080
EcoNI CCTNNNNNAGG 1 cut(s) 1570
EcoO109I RGGNCCY 1 cut(s) 1163
EcoRII CCWGG 3 cut(s) 558, 637, 770
EcoRV GATATC 1 cut(s) 1654
EcoT14I CCWWGG 2 cut(s) 285, 713
ErhI CCWWGG 2 cut(s) 285, 713
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 7 cut(s) 592, 693, 848, 989, 1019, 1266, 1605
FalI AAGNNNNNCTT 2 cut(s) 1053, 1085
FaqI GGGAC 2 cut(s) 1369, 1603
FatI CATG 7 cut(s) 588, 689, 844, 985, 1015, 1262, 1601
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 7 cut(s) 7, 130, 245, 465, 804, 807, 1527
FokI GGATG 7 cut(s) 359, 389, 917, 986, 1051, 1097, 1295
Fsp4HI GCNGC 7 cut(s) 7, 130, 245, 465, 804, 807, 1527
FspBI CTAG 3 cut(s) 363, 585, 1491
GluI GCNGC 7 cut(s) 7, 130, 245, 465, 804, 807, 1527
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 1551
HaeIII GGCC 3 cut(s) 230, 542, 1078
HapII CCGG 3 cut(s) 73, 1028, 1505
HgaI GACGC 2 cut(s) 79, 121
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 7 cut(s) 592, 693, 848, 989, 1019, 1266, 1605
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HinfI GANTC 6 cut(s) 143, 185, 841, 1520, 1613, 1714
HpaII CCGG 3 cut(s) 73, 1028, 1505
HphI GGTGA 1 cut(s) 1475
Hpy166II GTNNAC 6 cut(s) 201, 282, 743, 1260, 1334, 1498
Hpy188III TCNNGA 5 cut(s) 752, 791, 1442, 1485, 1505
Hpy8I GTNNAC 6 cut(s) 201, 282, 743, 1260, 1334, 1498
Hpy99I CGWCG 2 cut(s) 128, 143
HpyAV CCTTC 3 cut(s) 1079, 1238, 1679
HpyCH4III ACNGT 3 cut(s) 44, 1435, 1459
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 9 cut(s) 53, 530, 732, 1203, 1237, 1272, 1320, 1375, 1549
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 241, 527, 1200, 1326
HpyF3I CTNAG 9 cut(s) 275, 323, 725, 863, 992, 1080, 1412, 1748, 1770
HpySE526I ACGT 1 cut(s) 607
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 7 cut(s) 592, 693, 848, 989, 1019, 1266, 1605
Kpn2I TCCGGA 1 cut(s) 1504
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 6 cut(s) 379, 610, 784, 988, 1183, 1310
LmnI GCTCC 3 cut(s) 306, 667, 1062
Lsp1109I GCAGC 5 cut(s) 231, 451, 790, 793, 1513
LweI GCATC 7 cut(s) 180, 318, 530, 1073, 1212, 1640, 1734
MaeI CTAG 3 cut(s) 363, 585, 1491
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 2 cut(s) 625, 916
MalI GATC 6 cut(s) 381, 612, 786, 990, 1185, 1312
MboI GATC 6 cut(s) 379, 610, 784, 988, 1183, 1310
MboII GAAGA 7 cut(s) 56, 88, 166, 779, 1441, 1723, 1794
MfeI CAATTG 1 cut(s) 1238
MhlI GDGCHC 1 cut(s) 1301
MluCI AATT 9 cut(s) 563, 674, 747, 950, 1238, 1396, 1472, 1556, 1757
MlyI GAGTC 3 cut(s) 137, 179, 850
MmeI TCCRAC 4 cut(s) 162, 793, 1027, 1516
MroI TCCGGA 1 cut(s) 1504
MroXI GAANNNNTTC 1 cut(s) 424
MseI TTAA 7 cut(s) 393, 567, 1041, 1095, 1395, 1401, 1719
MslI CAYNNNNRTG 2 cut(s) 236, 1350
MspI CCGG 3 cut(s) 73, 1028, 1505
MspR9I CCNGG 4 cut(s) 560, 639, 772, 1029
MunI CAATTG 1 cut(s) 1238
Mva1269I GAATGC 1 cut(s) 1377
MvaI CCWGG 3 cut(s) 560, 639, 772
MwoI GCNNNNNNNGC 5 cut(s) 87, 241, 527, 1200, 1326
NciI CCSGG 1 cut(s) 1029
NdeII GATC 6 cut(s) 379, 610, 784, 988, 1183, 1310
NlaIII CATG 7 cut(s) 592, 693, 848, 989, 1019, 1266, 1605
NlaIV GGNNCC 4 cut(s) 663, 880, 1164, 1680
OliI CACNNNNGTG 1 cut(s) 236
PceI AGGCCT 1 cut(s) 1078
PctI GAATGC 1 cut(s) 1377
PdmI GAANNNNTTC 1 cut(s) 424
PfeI GAWTC 3 cut(s) 1520, 1613, 1714
PkrI GCNGC 7 cut(s) 8, 131, 246, 466, 805, 808, 1528
PleI GAGTC 3 cut(s) 137, 179, 849
PpsI GAGTC 3 cut(s) 137, 179, 849
Ppu21I YACGTR 1 cut(s) 608
PpuMI RGGWCCY 1 cut(s) 1163
PshAI GACNNNNGTC 1 cut(s) 1050
PshBI ATTAAT 1 cut(s) 1395
Psp5II RGGWCCY 1 cut(s) 1163
Psp6I CCWGG 3 cut(s) 558, 637, 770
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 3 cut(s) 558, 637, 770
PspN4I GGNNCC 4 cut(s) 663, 880, 1164, 1680
PspPI GGNCC 5 cut(s) 75, 710, 1163, 1538, 1678
PspPPI RGGWCCY 1 cut(s) 1163
PstNI CAGNNNCTG 1 cut(s) 1523
RseI CAYNNNNRTG 2 cut(s) 236, 1350
SaqAI TTAA 7 cut(s) 393, 567, 1041, 1095, 1395, 1401, 1719
SatI GCNGC 7 cut(s) 7, 130, 245, 465, 804, 807, 1527
Sau3AI GATC 6 cut(s) 379, 610, 784, 988, 1183, 1310
Sau96I GGNCC 5 cut(s) 75, 710, 1163, 1538, 1678
ScaI AGTACT 1 cut(s) 898
SchI GAGTC 3 cut(s) 137, 179, 850
ScrFI CCNGG 4 cut(s) 560, 639, 772, 1029
SduI GDGCHC 1 cut(s) 1301
SfaNI GCATC 7 cut(s) 180, 318, 530, 1073, 1212, 1640, 1734
SfcI CTRYAG 1 cut(s) 652
SinI GGWCC 5 cut(s) 75, 710, 1163, 1538, 1678
SmiMI CAYNNNNRTG 2 cut(s) 236, 1350
Sse9I AATT 9 cut(s) 563, 674, 747, 950, 1238, 1396, 1472, 1556, 1757
SseBI AGGCCT 1 cut(s) 1078
SsiI CCGC 3 cut(s) 129, 164, 1329
SspI AATATT 1 cut(s) 1156
SspMI CTAG 3 cut(s) 363, 585, 1491
StuI AGGCCT 1 cut(s) 1078
StyD4I CCNGG 4 cut(s) 558, 637, 770, 1027
StyI CCWWGG 2 cut(s) 285, 713
TaaI ACNGT 3 cut(s) 44, 1435, 1459
TaiI ACGT 1 cut(s) 610
TaqI TCGA 1 cut(s) 501
TasI AATT 9 cut(s) 563, 674, 747, 950, 1238, 1396, 1472, 1556, 1757
TatI WGTACW 4 cut(s) 896, 1107, 1257, 1734
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 3 cut(s) 1520, 1613, 1714
Tru1I TTAA 7 cut(s) 393, 567, 1041, 1095, 1395, 1401, 1719
Tru9I TTAA 7 cut(s) 393, 567, 1041, 1095, 1395, 1401, 1719
TscAI CASTG 3 cut(s) 47, 1327, 1462
TseI GCWGC 6 cut(s) 6, 244, 464, 803, 806, 1526
TspDTI ATGAA 6 cut(s) 634, 769, 1004, 1023, 1503, 1590
TspGWI ACGGA 2 cut(s) 415, 982
TspRI CASTG 3 cut(s) 47, 1327, 1462
VpaK11BI GGWCC 5 cut(s) 75, 710, 1163, 1538, 1678
VspI ATTAAT 1 cut(s) 1395
XagI CCTNNNNNAGG 1 cut(s) 1570
XapI RAATTY 4 cut(s) 563, 674, 950, 1472
XmnI GAANNNNTTC 1 cut(s) 424
XspI CTAG 3 cut(s) 363, 585, 1491
ZrmI AGTACT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.