Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Reverse (-)

57405475 .. 57407713

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGAGATGCCAGAGATGCATTAGACTCGACTCTAAACGAATGGCCAAAATTGATCGAGGAGTGCAAATGGCGTGCACAGGGCGATATGTGCCTGTTGAATGGTGGCCCGGGTTGGGCTACTAAGGATATCTTACTGAGACGCAAGAGCAGACTCGATATAGTTTTCTACATGACTGAAGATTCCTTTTTCATTGATCTTCATGATAATCCTGCTGCTGCTGTTGGATTTCAGTTCAATCTTACTGCAAGGAGTCATGCTAATAAAAGACATCTGAGTTTTGTTAGTGGAACCCTAAAGAATGGAAGTACTTTGGATGATAGACCAGTTACATTCAGAGGGAGTAATACAAATATATTGAAATTCAGTTTATTTCCACGGATATACCATAATCTACATGATCTAAGGCTCATCCAACCTTTGTTTCATGTGTTTGTACTGGGTTCATTCTTTAATGACACAAGTCAGCTCCAAGCATCCCTTCAAAGGCCTAAGGATGGAATACTTAACACCACATTGTACATCAACTTCCTCTCTGACTACATTGTGGAGATAGAGAAGCAAAATATTATGGGTCCTGGAAGGCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.52

Weight (kDa)

7.83

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	3 cut(s)	310, 438, 521
AfiI	CCNNNNNNNGG	3 cut(s)	115, 486, 497
AgsI	TTSAA	4 cut(s)	100, 238, 361, 485
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	4 cut(s)	408, 440, 465, 497
AluBI	AGCT	1 cut(s)	469
AluI	AGCT	1 cut(s)	469
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	133
Alw44I	GTGCAC	1 cut(s)	75
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	3 cut(s)	44, 106, 488
ApaLI	GTGCAC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	215, 218
ApoI	RAATTY	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	107, 575
AsuC2I	CCSGG	2 cut(s)	110, 111
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	512, 544
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	202, 205
BccI	CCATC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	1 cut(s)	579
BcnI	CCSGG	2 cut(s)	110, 111
BcoDI	GTCTC	1 cut(s)	133
BisI	GCNGC	2 cut(s)	216, 219
BlsI	GCNGC	2 cut(s)	217, 220
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	3 cut(s)	110, 111, 579
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	107, 575
BmiI	GGNNCC	2 cut(s)	292, 576
BmrFI	CCNGG	3 cut(s)	110, 111, 579
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	2 cut(s)	7, 485
BmuI	ACTGGG	1 cut(s)	449
BoxI	GACNNNNGTC	1 cut(s)	462
BpuMI	CCSGG	2 cut(s)	110, 111
BsaJI	CCNNGG	2 cut(s)	109, 377
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 486, 497
Bse1I	ACTGG	2 cut(s)	326, 444
Bse21I	CCTNAGG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	109, 377
BseGI	GGATG	4 cut(s)	322, 411, 476, 502
BseLI	CCNNNNNNNGG	3 cut(s)	115, 486, 497
BseMII	CTCAG	2 cut(s)	128, 266
BseNI	ACTGG	2 cut(s)	326, 444
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	202, 205
BshFI	GGCC	3 cut(s)	46, 108, 490
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	115, 486, 497
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	46, 108, 490
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	54, 196, 400
BspANI	GGCC	3 cut(s)	46, 108, 490
BspCNI	CTCAG	2 cut(s)	129, 267
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	292, 576
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	326, 444
BssECI	CCNNGG	2 cut(s)	109, 377
BssMI	GATC	3 cut(s)	54, 196, 400
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	591
BstAUI	TGTACA	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	5 cut(s)	123, 137, 275, 404, 492
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	4 cut(s)	322, 411, 476, 502
BstKTI	GATC	3 cut(s)	57, 199, 403
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	3 cut(s)	54, 196, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 90
BstNI	CCWGG	1 cut(s)	579
BstPAI	GACNNNNGTC	1 cut(s)	462
BstSCI	CCNGG	3 cut(s)	108, 109, 577
BstSLI	GKGCMC	1 cut(s)	79
BstV1I	GCAGC	2 cut(s)	202, 205
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	3 cut(s)	46, 108, 490
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	4 cut(s)	322, 411, 476, 502
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	107, 575
Cfr9I	CCCGGG	1 cut(s)	109
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	3 cut(s)	309, 437, 520
CviAII	CATG	5 cut(s)	172, 203, 257, 398, 428
CviJI	RGCY	6 cut(s)	46, 108, 119, 409, 469, 490
CviKI_1	RGCY	6 cut(s)	46, 108, 119, 409, 469, 490
CviQI	GTAC	3 cut(s)	309, 437, 520
DdeI	CTNAG	5 cut(s)	123, 137, 275, 404, 492
DpnI	GATC	3 cut(s)	56, 198, 402
DpnII	GATC	3 cut(s)	54, 196, 400
EaeI	YGGCCR	1 cut(s)	44
Eco147I	AGGCCT	1 cut(s)	490
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	577
EcoRV	GATATC	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	5 cut(s)	175, 206, 260, 401, 431
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 465, 497
FatI	CATG	5 cut(s)	171, 202, 256, 397, 427
Fnu4HI	GCNGC	2 cut(s)	216, 219
FokI	GGATG	4 cut(s)	329, 398, 463, 509
Fsp4HI	GCNGC	2 cut(s)	216, 219
GluI	GCNGC	2 cut(s)	216, 219
HaeIII	GGCC	3 cut(s)	46, 108, 490
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	150
Hin1II	CATG	5 cut(s)	175, 206, 260, 401, 431
HinfI	GANTC	5 cut(s)	26, 31, 153, 182, 253
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	3 cut(s)	276, 338, 538
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	491, 576
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4V	TGCA	4 cut(s)	20, 66, 77, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 90
HpyF3I	CTNAG	5 cut(s)	123, 137, 275, 404, 492
Hsp92II	CATG	5 cut(s)	175, 206, 260, 401, 431
Kzo9I	GATC	3 cut(s)	54, 196, 400
LmnI	GCTCC	1 cut(s)	474
LpnPI	CCDG	8 cut(s)	25, 65, 107, 123, 225, 339, 425, 564
Lsp1109I	GCAGC	2 cut(s)	202, 205
LweI	GCATC	2 cut(s)	7, 485
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	3 cut(s)	56, 198, 402
MboI	GATC	3 cut(s)	54, 196, 400
MboII	GAAGA	2 cut(s)	191, 191
MhlI	GDGCHC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	46
MluCI	AATT	2 cut(s)	50, 362
MluNI	TGGCCA	1 cut(s)	46
MlyI	GAGTC	4 cut(s)	20, 25, 147, 262
MmeI	TCCRAC	2 cut(s)	205, 439
MnlI	CCTC	3 cut(s)	52, 332, 542
Mox20I	TGGCCA	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	22
MscI	TGGCCA	1 cut(s)	46
MseI	TTAA	2 cut(s)	453, 507
Msp20I	TGGCCA	1 cut(s)	46
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	3 cut(s)	110, 111, 579
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	17, 90
NciI	CCSGG	2 cut(s)	110, 111
NdeII	GATC	3 cut(s)	54, 196, 400
NlaIII	CATG	5 cut(s)	175, 206, 260, 401, 431
NlaIV	GGNNCC	2 cut(s)	292, 576
NsiI	ATGCAT	1 cut(s)	22
PagI	TCATGA	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	577
PkrI	GCNGC	2 cut(s)	217, 220
PleI	GAGTC	4 cut(s)	20, 25, 147, 261
PpsI	GAGTC	4 cut(s)	20, 25, 147, 261
PpuMI	RGGWCCY	1 cut(s)	575
PshAI	GACNNNNGTC	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	2 cut(s)	292, 576
PspPI	GGNCC	2 cut(s)	107, 575
PspPPI	RGGWCCY	1 cut(s)	575
RsaI	GTAC	3 cut(s)	310, 438, 521
RsaNI	GTAC	3 cut(s)	309, 437, 520
SaqAI	TTAA	2 cut(s)	453, 507
SatI	GCNGC	2 cut(s)	216, 219
Sau3AI	GATC	3 cut(s)	54, 196, 400
Sau96I	GGNCC	2 cut(s)	107, 575
ScaI	AGTACT	1 cut(s)	310
SchI	GAGTC	4 cut(s)	20, 25, 147, 262
ScrFI	CCNGG	3 cut(s)	110, 111, 579
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	2 cut(s)	421, 471
SfaNI	GCATC	2 cut(s)	7, 485
SinI	GGWCC	1 cut(s)	575
SmaI	CCCGGG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	50, 362
SseBI	AGGCCT	1 cut(s)	490
SspI	AATATT	1 cut(s)	568
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	3 cut(s)	108, 109, 577
TaaI	ACNGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	29, 57, 156
TasI	AATT	2 cut(s)	50, 362
TatI	WGTACW	3 cut(s)	308, 436, 519
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	453, 507
Tru9I	TTAA	2 cut(s)	453, 507
TseI	GCWGC	2 cut(s)	215, 218
TspDTI	ATGAA	4 cut(s)	181, 191, 416, 435
TspGWI	ACGGA	1 cut(s)	394
TspMI	CCCGGG	1 cut(s)	109
VneI	GTGCAC	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	362
XmaI	CCCGGG	1 cut(s)	109
ZrmI	AGTACT	1 cut(s)	310
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.