Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Forward (+)

3515095 .. 3518132

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCACTAGGTAAGATGTTGAGGAAGGTCTTTCTAAGGTCATACAGGGTGAGTCATTTAGATGATGTTTTATCTTTGTTAACCGGAATGTATGCTAATTATTCTGTCTCTGCAGCTGGAAAGCCTGTTCGCATATCAAATAAAAGTTTTATCGGCTATATTTTCACTCGTAGTTTGGAGGTTGCTCTACTTTTTGACTTGCCAATGCAGATACATACAGGTCTTTTGGGCATTGAATGTCAACGGCAGGTCATTGAGGATGATAAGCGTTTTCACATACAGGTCTACCTCGACTTTGGCTTGGCTATACCTAAGCTCGGTGTCCAAGGGATGGTATCTTCACTAAAAGAACTTTTGGAGCTTGCTCCAATTAAGAAGAAGAAAATCCAGCAGACTTCCAAGAAAAACGAGAGACCACCAGCACCGGCAACTCTAAGAAAATACTCATCAGGCTCCTTTGTGCTCGTTGCCTCTGTGACGGCTGTAACCATCTCCTCCGACGCGGTGGTCGTAGCGTCCGATTCCTCCTCGGTCACCAAGACACCAACTCACACGAAGACAGCACAAATAGGTCCCAGAAATCCCACGTGGAAGACGGAGGCGGCCGCAGAGCGGTGGATGTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

209

Amino Acids

23.08

Weight (kDa)

9.93

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	238
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	613
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	503
AciI	CCGC	4 cut(s)	503, 602, 606, 613
AcoI	YGGCCR	1 cut(s)	603
AcvI	CACGTG	1 cut(s)	588
AfiI	CCNNNNNNNGG	3 cut(s)	317, 331, 612
AgsI	TTSAA	1 cut(s)	236
AloI	GAACNNNNNNTCC	2 cut(s)	111, 143
AluBI	AGCT	3 cut(s)	116, 316, 361
AluI	AGCT	3 cut(s)	116, 316, 361
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	112, 406
AoxI	GGCC	1 cut(s)	603
ApeKI	GCWGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	61, 526
AvaII	GGWCC	1 cut(s)	572
BbrPI	CACGTG	1 cut(s)	588
BbsI	GAAGAC	2 cut(s)	563, 599
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	2 cut(s)	325, 497
BceAI	ACGGC	2 cut(s)	260, 495
BcoDI	GTCTC	2 cut(s)	112, 406
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	3 cut(s)	114, 603, 606
BlsI	GCNGC	3 cut(s)	115, 604, 607
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	2 cut(s)	454, 574
BpiI	GAAGAC	2 cut(s)	563, 599
Bpu10I	CCTNAGC	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	325, 528
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 331, 612
Bse118I	RCCGGY	1 cut(s)	424
BseDI	CCNNGG	2 cut(s)	325, 528
BseGI	GGATG	3 cut(s)	265, 336, 624
BseLI	CCNNNNNNNGG	3 cut(s)	317, 331, 612
BseRI	GAGGAG	2 cut(s)	484, 517
BseX3I	CGGCCG	1 cut(s)	603
BseXI	GCAGC	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	605
BsiEI	CGRYCG	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	84, 425
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	3 cut(s)	317, 331, 612
BsmAI	GTCTC	2 cut(s)	112, 406
BsmFI	GGGAC	1 cut(s)	558
BsnI	GGCC	1 cut(s)	605
Bso31I	GGTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	465
BspACI	CCGC	4 cut(s)	503, 602, 606, 613
BspANI	GGCC	1 cut(s)	605
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	2 cut(s)	454, 574
BspMAI	CTGCAG	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	406
BsrBI	CCGCTC	1 cut(s)	613
BsrFI	RCCGGY	1 cut(s)	424
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	325, 528
BssT1I	CCWWGG	1 cut(s)	325
BstBAI	YACGTR	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	35, 312, 434
BstEII	GGTNACC	1 cut(s)	532
BstF5I	GGATG	3 cut(s)	265, 336, 624
BstFNI	CGCG	1 cut(s)	503
BstMAI	GTCTC	2 cut(s)	112, 406
BstMCI	CGRYCG	1 cut(s)	606
BstPI	GGTNACC	1 cut(s)	532
BstSFI	CTRYAG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	2 cut(s)	563, 599
BstZI	CGGCCG	1 cut(s)	603
BsuRI	GGCC	1 cut(s)	605
BtsCI	GGATG	3 cut(s)	265, 336, 624
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	363
CciNI	GCGGCCGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	572
CseI	GACGC	2 cut(s)	504, 509
DdeI	CTNAG	3 cut(s)	35, 312, 434
DrdI	GACNNNNNNGTC	1 cut(s)	506
DseDI	GACNNNNNNGTC	1 cut(s)	506
EaeI	YGGCCR	1 cut(s)	603
EagI	CGGCCG	1 cut(s)	603
EclXI	CGGCCG	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	572
Eco52I	CGGCCG	1 cut(s)	603
Eco72I	CACGTG	1 cut(s)	588
Eco91I	GGTNACC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	572
EcoO65I	GGTNACC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaiI	YATR	7 cut(s)	43, 93, 134, 159, 216, 278, 308
FaqI	GGGAC	1 cut(s)	558
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	114, 603, 606
FokI	GGATG	2 cut(s)	272, 343
Fsp4HI	GCNGC	3 cut(s)	114, 603, 606
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	3 cut(s)	114, 603, 606
HaeIII	GGCC	1 cut(s)	605
HapII	CCGG	2 cut(s)	84, 425
HgaI	GACGC	2 cut(s)	504, 509
HincII	GTYRAC	2 cut(s)	81, 242
HindII	GTYRAC	2 cut(s)	81, 242
HinfI	GANTC	2 cut(s)	52, 521
HpaI	GTTAAC	1 cut(s)	81
HpaII	CCGG	2 cut(s)	84, 425
HphI	GGTGA	2 cut(s)	61, 526
Hpy166II	GTNNAC	3 cut(s)	81, 242, 286
Hpy188I	TCNGA	2 cut(s)	499, 520
Hpy8I	GTNNAC	3 cut(s)	81, 242, 286
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	2 cut(s)	113, 208
HpyF3I	CTNAG	3 cut(s)	35, 312, 434
HpySE526I	ACGT	1 cut(s)	587
KspAI	GTTAAC	1 cut(s)	81
LmnI	GCTCC	3 cut(s)	358, 370, 458
Lsp1109I	GCAGC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	4 cut(s)	3, 475, 484, 532
MbiI	CCGCTC	1 cut(s)	613
MboII	GAAGA	5 cut(s)	330, 388, 391, 568, 604
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	2 cut(s)	97, 369
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	9 cut(s)	15, 172, 250, 299, 481, 505, 535, 538, 592
MseI	TTAA	2 cut(s)	80, 372
MslI	CAYNNNNRTG	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	84, 425
MvnI	CGCG	1 cut(s)	503
NlaIV	GGNNCC	2 cut(s)	454, 574
NmuCI	GTSAC	3 cut(s)	3, 475, 532
NotI	GCGGCCGC	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	2 cut(s)	507, 516
PfeI	GAWTC	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	115, 604, 607
PleI	GAGTC	1 cut(s)	60
PmaCI	CACGTG	1 cut(s)	588
PmlI	CACGTG	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	588
PpuMI	RGGWCCY	1 cut(s)	572
Psp5II	RGGWCCY	1 cut(s)	572
PspCI	CACGTG	1 cut(s)	588
PspEI	GGTNACC	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	454, 574
PspPI	GGNCC	1 cut(s)	572
PspPPI	RGGWCCY	1 cut(s)	572
PstI	CTGCAG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	80, 372
SatI	GCNGC	3 cut(s)	114, 603, 606
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	97, 369
SsiI	CCGC	4 cut(s)	503, 602, 606, 613
SspMI	CTAG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	325
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	1 cut(s)	291
TaqII	GACCGA	1 cut(s)	520
TasI	AATT	2 cut(s)	97, 369
TauI	GCSGC	2 cut(s)	605, 608
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	2 cut(s)	80, 372
Tru9I	TTAA	2 cut(s)	80, 372
TseFI	GTSAC	3 cut(s)	3, 475, 532
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	3 cut(s)	3, 475, 532
TspGWI	ACGGA	1 cut(s)	611
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.