Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Reverse (-)

9279033 .. 9282177

Gene Structure 3145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG112800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAGAGGCAGCGTAAAGAGGAAGAAGTCAAAACTCAATCCTCGAGAAAAGGACAAGAGGCAGAGCAATCAGTAATGAACAGGGCAAGTAGTCCTCAAACAGGGGGTCATCAATCTGGTGGAACCCTGAAATCGTTGAAGGATAAATTTAGCAAGGAGGAGAAAGAAGTCCCAGAAGCATCTGCTGCATATCGCAGCGGTCTGGAAATTAGTACACATGTCACTAGGAAAGATGTTGAGGAAGGTCTTTCTGAGGTCATACAGGCTGGAAAGCCTGTTCACATATCAAATAAAAGTTTTATCGACTATATTTTCACTCGTAGTTTGGAGGTTGCTCTACTTTTTGACTTGCCAATGCAGATACATACAGGTTTTGGCGACAAAGATTTGGACTTGAGGCTATCCAATCCCCTTCATCTCCGGGCTGTGCTTGAGGCCAAGAGATTTTCTAAAAGCCGCATTGTTATTTTACATGCATCCTACCCGTTTTCAAAGGAAGCATCATATCTAGCCTCTGTTTATCCCCATGTCTACCTTGACTTTGGCTTGGCTATACCCAAGCTCAATGTCCAAGGGATGGTATCTTCACTAAAAGAACTTTTGGAGCTTGCTCCAATTAAGAAGATGAATAAGAAGTGCACAGTTGATACCGTGCTGTTTAAGAAGGACAATTTCATGGTCACTGTGTATCCTGGCATGGATTATGCATTCATTGTGGCGCTTTTTGTCATTCTTGATGTAGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

249

Amino Acids

27.95

Weight (kDa)

8.75

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_2	PF04909	115 - 208	2.2e-09	Amidohydrolase
LOR	PF04525	206 - 246	8e-09	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	2 cut(s)	198, 457
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	2 cut(s)	101, 577
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	139, 492
AjnI	CCWGG	1 cut(s)	691
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AluBI	AGCT	2 cut(s)	562, 607
AluI	AGCT	2 cut(s)	562, 607
Alw21I	GWGCWC	1 cut(s)	641
Alw44I	GTGCAC	1 cut(s)	637
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	1 cut(s)	435
ApaLI	GTGCAC	1 cut(s)	637
ApeKI	GCWGC	3 cut(s)	10, 185, 195
ApoI	RAATTY	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AspLEI	GCGC	1 cut(s)	721
AsuC2I	CCSGG	1 cut(s)	422
AvaI	CYCGRG	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	641
BbvI	GCAGC	3 cut(s)	22, 172, 207
BccI	CCATC	1 cut(s)	571
BciT130I	CCWGG	1 cut(s)	693
BciVI	GTATCC	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	422
BfaI	CTAG	2 cut(s)	225, 509
BfoI	RGCGCY	1 cut(s)	722
BfuI	GTATCC	1 cut(s)	699
BisI	GCNGC	4 cut(s)	11, 186, 196, 457
BlsI	GCNGC	4 cut(s)	12, 187, 197, 458
Bme1390I	CCNGG	2 cut(s)	422, 693
BmeT110I	CYCGRG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	422, 693
BmsI	GCATC	3 cut(s)	188, 485, 509
BpuEI	CTTGAG	2 cut(s)	415, 452
BpuMI	CCSGG	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 577
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	2 cut(s)	476, 582
BseLI	CCNNNNNNNGG	2 cut(s)	101, 577
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	3 cut(s)	22, 172, 207
BshFI	GGCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	641
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	101, 577
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	641
BspACI	CCGC	2 cut(s)	198, 457
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	3 cut(s)	643, 652, 685
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	476, 582
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	2 cut(s)	221, 476
BstSCI	CCNGG	2 cut(s)	420, 691
BstSLI	GKGCMC	1 cut(s)	641
BstV1I	GCAGC	3 cut(s)	22, 172, 207
BsuI	GTATCC	1 cut(s)	699
BsuRI	GGCC	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	476, 582
BtsIMutI	CAGTG	1 cut(s)	681
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	1 cut(s)	721
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	5 cut(s)	218, 473, 527, 676, 697
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	571
Eco88I	CYCGRG	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	571
EcoT22I	ATGCAT	2 cut(s)	478, 709
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	5 cut(s)	221, 476, 530, 679, 700
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	5 cut(s)	217, 472, 526, 675, 696
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	4 cut(s)	11, 186, 196, 457
FokI	GGATG	2 cut(s)	463, 589
Fsp4HI	GCNGC	4 cut(s)	11, 186, 196, 457
FspBI	CTAG	2 cut(s)	225, 509
GlaI	GCGC	1 cut(s)	720
GluI	GCNGC	4 cut(s)	11, 186, 196, 457
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	1 cut(s)	437
HapII	CCGG	1 cut(s)	421
HhaI	GCGC	1 cut(s)	721
Hin1II	CATG	5 cut(s)	221, 476, 530, 679, 700
Hin6I	GCGC	1 cut(s)	719
HinP1I	GCGC	1 cut(s)	719
HpaII	CCGG	1 cut(s)	421
Hpy166II	GTNNAC	4 cut(s)	215, 280, 532, 639
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	3 cut(s)	45, 203, 734
Hpy8I	GTNNAC	4 cut(s)	215, 280, 532, 639
HpyAV	CCTTC	4 cut(s)	133, 236, 422, 658
HpyCH4III	ACNGT	3 cut(s)	643, 652, 685
HpyCH4V	TGCA	5 cut(s)	188, 358, 476, 639, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	5 cut(s)	221, 476, 530, 679, 700
HspAI	GCGC	1 cut(s)	719
LmnI	GCTCC	2 cut(s)	604, 616
Lsp1109I	GCAGC	3 cut(s)	22, 172, 207
LweI	GCATC	3 cut(s)	188, 485, 509
MaeI	CTAG	2 cut(s)	225, 509
MaeIII	GTNAC	2 cut(s)	220, 679
MboII	GAAGA	3 cut(s)	35, 576, 634
MhlI	GDGCHC	1 cut(s)	641
MluCI	AATT	4 cut(s)	146, 207, 615, 670
Mph1103I	ATGCAT	2 cut(s)	478, 709
MseI	TTAA	2 cut(s)	618, 660
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	2 cut(s)	422, 693
Mva1269I	GAATGC	1 cut(s)	707
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	422
NlaIII	CATG	5 cut(s)	221, 476, 530, 679, 700
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	2 cut(s)	220, 679
NsiI	ATGCAT	2 cut(s)	478, 709
NspI	RCATGY	2 cut(s)	221, 476
PaeR7I	CTCGAG	1 cut(s)	43
PciI	ACATGT	1 cut(s)	217
PctI	GAATGC	1 cut(s)	707
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	4 cut(s)	12, 187, 197, 458
PscI	ACATGT	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	618, 660
SatI	GCNGC	4 cut(s)	11, 186, 196, 457
ScrFI	CCNGG	2 cut(s)	422, 693
SduI	GDGCHC	1 cut(s)	641
SetI	ASST	8 cut(s)	247, 258, 333, 373, 537, 564, 609, 745
SfaNI	GCATC	3 cut(s)	188, 485, 509
Sfr274I	CTCGAG	1 cut(s)	43
SlaI	CTCGAG	1 cut(s)	43
SmlI	CTYRAG	3 cut(s)	43, 394, 431
SmoI	CTYRAG	3 cut(s)	43, 394, 431
Sse9I	AATT	4 cut(s)	146, 207, 615, 670
SsiI	CCGC	2 cut(s)	198, 457
SspMI	CTAG	2 cut(s)	225, 509
StyD4I	CCNGG	2 cut(s)	420, 691
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	3 cut(s)	643, 652, 685
TaqI	TCGA	2 cut(s)	44, 303
TasI	AATT	4 cut(s)	146, 207, 615, 670
TatI	WGTACW	1 cut(s)	212
TauI	GCSGC	1 cut(s)	459
Tru1I	TTAA	2 cut(s)	618, 660
Tru9I	TTAA	2 cut(s)	618, 660
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	2 cut(s)	220, 679
TseI	GCWGC	3 cut(s)	10, 185, 195
Tsp45I	GTSAC	2 cut(s)	220, 679
TspDTI	ATGAA	5 cut(s)	92, 404, 641, 664, 700
TspRI	CASTG	1 cut(s)	688
Van91I	CCANNNNNTGG	1 cut(s)	577
VneI	GTGCAC	1 cut(s)	637
XagI	CCTNNNNNAGG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	2 cut(s)	221, 476
XhoI	CTCGAG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	2 cut(s)	225, 509
Zsp2I	ATGCAT	2 cut(s)	478, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.