Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001442

Physical Location & Seq

Genomic Coordinates Reverse (-)

62258842 .. 62263123

Gene Structure 4282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG459600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTATGCTAATTATTCTGTCTCTGCAGCTGGAAAGCCTGTTCACATATCAAATAAAAGTTTTATCGACTATATTTTCACTCGTAGTTTGGAGGTTGCTCTACTTTTTGACTTGCCAATGCAAATACATACAGGTTTTGGCGACAAAGATTTGGACTTGTGGCTATCCAATCCCCTTCATCTCCGGGCTGTGCTTGAGGCCAAGAGATTTTCTAAAAGCCGCATTGTTCTTTTACATGCATCCTACCCGTTTTCAAAGGAAGCATCATATCTAGCCTCTATTTATCCCCAGGTCTACCTCGACTTTGGCTTGGCTATACCCAAGCTCAGTGTCCAAGGGATGGTATCTTCACTAAAAGAACTTTTGGAGCTTGCTCCAATTAAGAAGTCCTGGAGAACCATGCACAGTGTCACGCAGCACTCATTCGCTGACACCTGTCACAGCATGAAAAAACGTGTCCCCAAAGCAGGACACCTCATTCGGTTTTCTTCATTTAAAGCGGTTCCGAGCGTCATTCTCATTCCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

176

Amino Acids

19.76

Weight (kDa)

9.71

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_2	PF04909	36 - 126	5.1e-08	Amidohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16520 AT5G16520
fragaria_vesca	FvH4_6g00750 FvH4_6g00750 FvH4_6g00750 FvH4_6g00750
malus_domestica	MD04G1241700.v1.1 MD12G1258400.v1.1
prunus_persica	Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1 Prupe.6G359100_v2.0.a1
pyrus_communis	pycom04g21320 pycom12g23700
rosa_chinensis	RchiOBHm_Chr2g0115301 RchiOBHm_Chr3g0448231 RchiOBHm_Chr6g0260941 RchiOBHm_Chr7g0239281
rosa_laevigata	RLG00000009757 RLG00000016104 RLG00000025935 RLG00000028051 RLG00000032394
rosa_multiflora	Rmu_co8146880.1_g000001 Rmu_co8443701.1_g000001 Rmu_sc0002709.1_g000018 Rmu_sc0005969.1_g000038 Rmu_sc0008849.1_g000004 Rmu_sc0013667.1_g000001 Rmu_sc0014992.1_g000009
rosa_roxburghii	Rroxscaffold_5G00335910 Rroxscaffold_6G00426360 Rroxscaffold_7G00212140 Rroxscaffold_7G00212150
rosa_rugosa	Rorug02G0609100 Rorug02G0609200 Rorug06G0016900 Rorug06G0090600
rosa_samantha	Rh1AG349100 Rh2CG258600 Rh2CG459600 Rh3AG009000 Rh3BG008600 Rh3BG374300 Rh3CG008700 Rh3DG009300 Rh3DG112800 Rh5BG175800 Rh7AG480300
rosa_wichuraiana	Rw3G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	340
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	2 cut(s)	220, 500
AfiI	CCNNNNNNNGG	2 cut(s)	340, 467
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	255
AjnI	CCWGG	3 cut(s)	288, 389, 523
AloI	GAACNNNNNNTCC	2 cut(s)	24, 56
AluBI	AGCT	3 cut(s)	29, 325, 370
AluI	AGCT	3 cut(s)	29, 325, 370
Alw26I	GTCTC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	26, 415
ArsI	GACNNNNNNTTYG	2 cut(s)	462, 494
AsuC2I	CCSGG	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	38, 427
BccI	CCATC	1 cut(s)	334
BciT130I	CCWGG	3 cut(s)	290, 391, 525
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	3 cut(s)	27, 220, 416
BlsI	GCNGC	3 cut(s)	28, 221, 417
Bme1390I	CCNGG	4 cut(s)	185, 290, 391, 525
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	4 cut(s)	185, 290, 391, 525
BmsI	GCATC	2 cut(s)	248, 272
BoxI	GACNNNNGTC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	288, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 467
BseBI	CCWGG	3 cut(s)	290, 391, 525
BseDI	CCNNGG	2 cut(s)	288, 334
BseGI	GGATG	2 cut(s)	239, 345
BseLI	CCNNNNNNNGG	2 cut(s)	340, 467
BseMII	CTCAG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	38, 427
BshFI	GGCC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	2 cut(s)	340, 467
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	1 cut(s)	200
BspACI	CCGC	2 cut(s)	220, 500
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	504
BspMAI	CTGCAG	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	288, 334
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	3 cut(s)	290, 391, 525
Bst4CI	ACNGT	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	239, 345
BstMAI	GTCTC	1 cut(s)	25
BstNI	CCWGG	3 cut(s)	290, 391, 525
BstNSI	RCATGY	1 cut(s)	239
BstPAI	GACNNNNGTC	1 cut(s)	435
BstSCI	CCNGG	4 cut(s)	183, 288, 389, 523
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	38, 427
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	2 cut(s)	239, 345
BtsIMutI	CAGTG	2 cut(s)	334, 412
Cac8I	GCNNGC	1 cut(s)	372
CseI	GACGC	1 cut(s)	499
CviAII	CATG	3 cut(s)	236, 400, 445
DdeI	CTNAG	1 cut(s)	326
DraI	TTTAAA	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	334
EcoRII	CCWGG	3 cut(s)	288, 389, 523
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	239, 403, 448
FaiI	YATR	9 cut(s)	6, 47, 72, 129, 237, 268, 317, 401, 446
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	3 cut(s)	235, 399, 444
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	27, 220, 416
FokI	GGATG	2 cut(s)	226, 352
Fsp4HI	GCNGC	3 cut(s)	27, 220, 416
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	3 cut(s)	27, 220, 416
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	499
Hin1II	CATG	3 cut(s)	239, 403, 448
HpaII	CCGG	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	43, 295
Hpy188I	TCNGA	1 cut(s)	507
Hpy8I	GTNNAC	2 cut(s)	43, 295
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	4 cut(s)	26, 121, 239, 403
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	3 cut(s)	239, 403, 448
LmnI	GCTCC	2 cut(s)	367, 379
Lsp1109I	GCAGC	2 cut(s)	38, 427
LweI	GCATC	2 cut(s)	248, 272
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	2 cut(s)	409, 437
MboII	GAAGA	2 cut(s)	339, 480
MluCI	AATT	2 cut(s)	10, 378
MnlI	CCTC	5 cut(s)	85, 190, 286, 308, 485
Mph1103I	ATGCAT	1 cut(s)	241
MseI	TTAA	3 cut(s)	381, 495, 529
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	4 cut(s)	185, 290, 391, 525
MvaI	CCWGG	3 cut(s)	290, 391, 525
NciI	CCSGG	1 cut(s)	185
NlaIII	CATG	3 cut(s)	239, 403, 448
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	2 cut(s)	409, 437
NsiI	ATGCAT	1 cut(s)	241
NspI	RCATGY	1 cut(s)	239
PflMI	CCANNNNNTGG	1 cut(s)	340
PfoI	TCCNGGA	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	28, 221, 417
PshAI	GACNNNNGTC	1 cut(s)	435
Psp6I	CCWGG	3 cut(s)	288, 389, 523
PspGI	CCWGG	3 cut(s)	288, 389, 523
PspN4I	GGNNCC	1 cut(s)	504
PstI	CTGCAG	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	381, 495, 529
SatI	GCNGC	3 cut(s)	27, 220, 416
ScrFI	CCNGG	4 cut(s)	185, 290, 391, 525
SfaNI	GCATC	2 cut(s)	248, 272
SfcI	CTRYAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	10, 378
SsiI	CCGC	2 cut(s)	220, 500
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	4 cut(s)	183, 288, 389, 523
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	2 cut(s)	66, 300
TasI	AATT	2 cut(s)	10, 378
TauI	GCSGC	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	381, 495, 529
Tru9I	TTAA	3 cut(s)	381, 495, 529
TscAI	CASTG	2 cut(s)	334, 412
TseFI	GTSAC	2 cut(s)	409, 437
TseI	GCWGC	2 cut(s)	26, 415
Tsp45I	GTSAC	2 cut(s)	409, 437
TspDTI	ATGAA	3 cut(s)	167, 461, 480
TspRI	CASTG	2 cut(s)	334, 412
Van91I	CCANNNNNTGG	1 cut(s)	340
XceI	RCATGY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.