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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 131 |
| Acc16I | TGCGCA | 2 cut(s) | 52, 1842 |
| AccI | GTMKAC | 2 cut(s) | 135, 1343 |
| AccII | CGCG | 3 cut(s) | 158, 1662, 1664 |
| AclI | AACGTT | 2 cut(s) | 507, 1812 |
| AclWI | GGATC | 3 cut(s) | 1292, 1402, 1447 |
| AcoI | YGGCCR | 1 cut(s) | 534 |
| AcsI | RAATTY | 3 cut(s) | 557, 944, 1069 |
| AcuI | CTGAAG | 1 cut(s) | 1766 |
| AcyI | GRCGYC | 1 cut(s) | 132 |
| AfaI | GTAC | 9 cut(s) | 62, 613, 758, 829, 1096, 1220, 1417, 1779, 1808 |
| AgsI | TTSAA | 5 cut(s) | 544, 594, 746, 1067, 1523 |
| AjnI | CCWGG | 1 cut(s) | 631 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 990, 1022, 1458, 1490 |
| AleI | CACNNNNGTG | 1 cut(s) | 230 |
| Alw21I | GWGCWC | 2 cut(s) | 237, 1532 |
| Alw26I | GTCTC | 1 cut(s) | 155 |
| AlwI | GGATC | 3 cut(s) | 1292, 1402, 1447 |
| AoxI | GGCC | 3 cut(s) | 222, 534, 1186 |
| ApeKI | GCWGC | 8 cut(s) | 36, 87, 458, 797, 800, 803, 1353, 1838 |
| ApoI | RAATTY | 3 cut(s) | 557, 944, 1069 |
| AspLEI | GCGC | 4 cut(s) | 47, 53, 1664, 1843 |
| AspS9I | GGNCC | 2 cut(s) | 704, 1157 |
| AsuC2I | CCSGG | 2 cut(s) | 1023, 1566 |
| AvaII | GGWCC | 2 cut(s) | 704, 1157 |
| AxyI | CCTNAGG | 1 cut(s) | 269 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 603, 636, 894, 927 |
| BauI | CACGAG | 2 cut(s) | 682, 1802 |
| BbsI | GAAGAC | 2 cut(s) | 205, 1517 |
| Bbv12I | GWGCWC | 2 cut(s) | 237, 1532 |
| BbvI | GCAGC | 8 cut(s) | 48, 74, 445, 784, 787, 790, 1365, 1825 |
| BccI | CCATC | 6 cut(s) | 122, 173, 191, 287, 1073, 1634 |
| BceAI | ACGGC | 2 cut(s) | 142, 194 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1640, 1674 |
| BciT130I | CCWGG | 1 cut(s) | 633 |
| BclI | TGATCA | 1 cut(s) | 373 |
| BcnI | CCSGG | 2 cut(s) | 1023, 1566 |
| BcoDI | GTCTC | 1 cut(s) | 155 |
| BfaI | CTAG | 3 cut(s) | 357, 579, 1739 |
| BfmI | CTRYAG | 2 cut(s) | 646, 1632 |
| BlpI | GCTNAGC | 1 cut(s) | 1493 |
| Bme1390I | CCNGG | 3 cut(s) | 633, 1023, 1566 |
| Bme18I | GGWCC | 2 cut(s) | 704, 1157 |
| BmgT120I | GGNCC | 2 cut(s) | 704, 1157 |
| BmiI | GGNNCC | 6 cut(s) | 311, 317, 657, 874, 1158, 1169 |
| BmrFI | CCNGG | 3 cut(s) | 633, 1023, 1566 |
| BmrI | ACTGGG | 1 cut(s) | 1324 |
| BmsI | GCATC | 4 cut(s) | 30, 1030, 1206, 1741 |
| BmuI | ACTGGG | 1 cut(s) | 1324 |
| BpiI | GAAGAC | 2 cut(s) | 205, 1517 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1454 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1493 |
| BpuEI | CTTGAG | 1 cut(s) | 1290 |
| BpuMI | CCSGG | 2 cut(s) | 1023, 1566 |
| BsaAI | YACGTR | 1 cut(s) | 602 |
| BsaHI | GRCGYC | 1 cut(s) | 132 |
| BsaI | GGTCTC | 1 cut(s) | 155 |
| BsaJI | CCNNGG | 1 cut(s) | 570 |
| BsaWI | WCCGGW | 1 cut(s) | 318 |
| Bse1I | ACTGG | 6 cut(s) | 40, 105, 628, 657, 908, 1319 |
| Bse21I | CCTNAGG | 1 cut(s) | 269 |
| Bse3DI | GCAATG | 2 cut(s) | 1238, 1267 |
| BseBI | CCWGG | 1 cut(s) | 633 |
| BseDI | CCNNGG | 1 cut(s) | 570 |
| BseGI | GGATG | 7 cut(s) | 346, 376, 904, 993, 1372, 1645, 1756 |
| BseMI | GCAATG | 2 cut(s) | 1238, 1267 |
| BseMII | CTCAG | 3 cut(s) | 283, 838, 1507 |
| BseNI | ACTGG | 6 cut(s) | 40, 105, 628, 657, 908, 1319 |
| BseRI | GAGGAG | 1 cut(s) | 648 |
| BseXI | GCAGC | 8 cut(s) | 48, 74, 445, 784, 787, 790, 1365, 1825 |
| BsgI | GTGCAG | 1 cut(s) | 745 |
| Bsh1236I | CGCG | 3 cut(s) | 158, 1662, 1664 |
| BshFI | GGCC | 3 cut(s) | 224, 536, 1188 |
| BsiHKAI | GWGCWC | 2 cut(s) | 237, 1532 |
| BsiSI | CCGG | 4 cut(s) | 313, 319, 1022, 1565 |
| BslFI | GGGAC | 3 cut(s) | 937, 1045, 1331 |
| BsmAI | GTCTC | 1 cut(s) | 155 |
| BsmFI | GGGAC | 3 cut(s) | 937, 1045, 1331 |
| BsmI | GAATGC | 2 cut(s) | 1089, 1600 |
| BsnI | GGCC | 3 cut(s) | 224, 536, 1188 |
| Bso31I | GGTCTC | 1 cut(s) | 155 |
| Bsp1286I | GDGCHC | 2 cut(s) | 237, 1532 |
| Bsp1407I | TGTACA | 2 cut(s) | 756, 1777 |
| Bsp143I | GATC | 6 cut(s) | 373, 778, 982, 1284, 1394, 1439 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1493 |
| BspANI | GGCC | 3 cut(s) | 224, 536, 1188 |
| BspCNI | CTCAG | 3 cut(s) | 282, 837, 1506 |
| BspFNI | CGCG | 3 cut(s) | 158, 1662, 1664 |
| BspHI | TCATGA | 2 cut(s) | 979, 1009 |
| BspLI | GGNNCC | 6 cut(s) | 311, 317, 657, 874, 1158, 1169 |
| BspPI | GGATC | 3 cut(s) | 1292, 1402, 1447 |
| BspTNI | GGTCTC | 1 cut(s) | 155 |
| BsrDI | GCAATG | 2 cut(s) | 1238, 1267 |
| BsrGI | TGTACA | 2 cut(s) | 756, 1777 |
| BsrI | ACTGG | 6 cut(s) | 40, 105, 628, 657, 908, 1319 |
| BssECI | CCNNGG | 1 cut(s) | 570 |
| BssMI | GATC | 6 cut(s) | 373, 778, 982, 1284, 1394, 1439 |
| BssNAI | GTATAC | 1 cut(s) | 1344 |
| BssNI | GRCGYC | 1 cut(s) | 132 |
| BssSI | CACGAG | 2 cut(s) | 682, 1802 |
| Bst1107I | GTATAC | 1 cut(s) | 1344 |
| Bst2BI | CACGAG | 2 cut(s) | 682, 1802 |
| Bst2UI | CCWGG | 1 cut(s) | 633 |
| Bst4CI | ACNGT | 5 cut(s) | 574, 1094, 1422, 1540, 1734 |
| Bst6I | CTCTTC | 1 cut(s) | 446 |
| BstACI | GRCGYC | 1 cut(s) | 132 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 42, 521, 1849 |
| BstAUI | TGTACA | 2 cut(s) | 756, 1777 |
| BstBAI | YACGTR | 1 cut(s) | 602 |
| BstC8I | GCNNGC | 3 cut(s) | 49, 85, 1499 |
| BstDEI | CTNAG | 8 cut(s) | 269, 719, 824, 986, 1454, 1493, 1503, 1790 |
| BstDSI | CCRYGG | 1 cut(s) | 570 |
| BstF5I | GGATG | 7 cut(s) | 346, 376, 904, 993, 1372, 1645, 1756 |
| BstFNI | CGCG | 3 cut(s) | 158, 1662, 1664 |
| BstHHI | GCGC | 4 cut(s) | 47, 53, 1664, 1843 |
| BstKTI | GATC | 6 cut(s) | 376, 781, 985, 1287, 1397, 1442 |
| BstMAI | GTCTC | 1 cut(s) | 155 |
| BstMBI | GATC | 6 cut(s) | 373, 778, 982, 1284, 1394, 1439 |
| BstNI | CCWGG | 1 cut(s) | 633 |
| BstNSI | RCATGY | 1 cut(s) | 857 |
| BstSCI | CCNGG | 3 cut(s) | 631, 1021, 1564 |
| BstSFI | CTRYAG | 2 cut(s) | 646, 1632 |
| BstUI | CGCG | 3 cut(s) | 158, 1662, 1664 |
| BstV1I | GCAGC | 8 cut(s) | 48, 74, 445, 784, 787, 790, 1365, 1825 |
| BstV2I | GAAGAC | 2 cut(s) | 205, 1517 |
| BstZ17I | GTATAC | 1 cut(s) | 1344 |
| Bsu36I | CCTNAGG | 1 cut(s) | 269 |
| BsuRI | GGCC | 3 cut(s) | 224, 536, 1188 |
| BtgI | CCRYGG | 1 cut(s) | 570 |
| BtgZI | GCGATG | 1 cut(s) | 1581 |
| BtsCI | GGATG | 7 cut(s) | 346, 376, 904, 993, 1372, 1645, 1756 |
| BtsIMutI | CAGTG | 3 cut(s) | 47, 1042, 1312 |
| Cac8I | GCNNGC | 3 cut(s) | 49, 85, 1499 |
| CciI | TCATGA | 2 cut(s) | 979, 1009 |
| CfoI | GCGC | 4 cut(s) | 47, 53, 1664, 1843 |
| Cfr13I | GGNCC | 2 cut(s) | 704, 1157 |
| CseI | GACGC | 4 cut(s) | 79, 121, 1047, 1653 |
| Csp6I | GTAC | 9 cut(s) | 61, 612, 757, 828, 1095, 1219, 1416, 1778, 1807 |
| CviAII | CATG | 8 cut(s) | 6, 553, 765, 839, 854, 980, 1010, 1347 |
| CviQI | GTAC | 9 cut(s) | 61, 612, 757, 828, 1095, 1219, 1416, 1778, 1807 |
| DdeI | CTNAG | 8 cut(s) | 269, 719, 824, 986, 1454, 1493, 1503, 1790 |
| DpnI | GATC | 6 cut(s) | 375, 780, 984, 1286, 1396, 1441 |
| DpnII | GATC | 6 cut(s) | 373, 778, 982, 1284, 1394, 1439 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 131 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 131 |
| EaeI | YGGCCR | 1 cut(s) | 534 |
| Eam1104I | CTCTTC | 1 cut(s) | 446 |
| EarI | CTCTTC | 1 cut(s) | 446 |
| Eco31I | GGTCTC | 1 cut(s) | 155 |
| Eco32I | GATATC | 2 cut(s) | 1270, 1717 |
| Eco47I | GGWCC | 2 cut(s) | 704, 1157 |
| Eco57I | CTGAAG | 1 cut(s) | 1766 |
| Eco81I | CCTNAGG | 1 cut(s) | 269 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1157 |
| EcoRII | CCWGG | 1 cut(s) | 631 |
| EcoRV | GATATC | 2 cut(s) | 1270, 1717 |
| FaeI | CATG | 8 cut(s) | 9, 556, 768, 842, 857, 983, 1013, 1350 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1481, 1513 |
| FaqI | GGGAC | 3 cut(s) | 937, 1045, 1331 |
| FatI | CATG | 8 cut(s) | 5, 552, 764, 838, 853, 979, 1009, 1346 |
| FauI | CCCGC | 1 cut(s) | 1692 |
| FbaI | TGATCA | 1 cut(s) | 373 |
| FblI | GTMKAC | 2 cut(s) | 135, 1343 |
| FokI | GGATG | 7 cut(s) | 353, 383, 911, 980, 1379, 1652, 1763 |
| FspBI | CTAG | 3 cut(s) | 357, 579, 1739 |
| FspI | TGCGCA | 2 cut(s) | 52, 1842 |
| GlaI | GCGC | 4 cut(s) | 46, 52, 1663, 1842 |
| HaeIII | GGCC | 3 cut(s) | 224, 536, 1188 |
| HapII | CCGG | 4 cut(s) | 313, 319, 1022, 1565 |
| HgaI | GACGC | 4 cut(s) | 79, 121, 1047, 1653 |
| HhaI | GCGC | 4 cut(s) | 47, 53, 1664, 1843 |
| Hin1I | GRCGYC | 1 cut(s) | 132 |
| Hin1II | CATG | 8 cut(s) | 9, 556, 768, 842, 857, 983, 1013, 1350 |
| Hin6I | GCGC | 4 cut(s) | 45, 51, 1662, 1841 |
| HinP1I | GCGC | 4 cut(s) | 45, 51, 1662, 1841 |
| HincII | GTYRAC | 3 cut(s) | 136, 666, 737 |
| HindII | GTYRAC | 3 cut(s) | 136, 666, 737 |
| HinfI | GANTC | 8 cut(s) | 153, 179, 436, 835, 1513, 1619, 1676, 1786 |
| HpaII | CCGG | 4 cut(s) | 313, 319, 1022, 1565 |
| Hpy166II | GTNNAC | 7 cut(s) | 136, 195, 666, 737, 819, 1344, 1418 |
| Hpy188I | TCNGA | 9 cut(s) | 300, 690, 920, 1055, 1289, 1534, 1704, 1759, 1774 |
| Hpy188III | TCNNGA | 8 cut(s) | 544, 673, 746, 980, 1010, 1243, 1307, 1523 |
| Hpy8I | GTNNAC | 7 cut(s) | 136, 195, 666, 737, 819, 1344, 1418 |
| Hpy99I | CGWCG | 3 cut(s) | 128, 137, 779 |
| HpyAV | CCTTC | 3 cut(s) | 550, 1232, 1741 |
| HpyCH4III | ACNGT | 5 cut(s) | 574, 1094, 1422, 1540, 1734 |
| HpyCH4IV | ACGT | 5 cut(s) | 507, 601, 1812, 1817, 1901 |
| HpyCH4V | TGCA | 9 cut(s) | 502, 524, 726, 1043, 1197, 1203, 1231, 1612, 1801 |
| HpyF3I | CTNAG | 8 cut(s) | 269, 719, 824, 986, 1454, 1493, 1503, 1790 |
| HpySE526I | ACGT | 5 cut(s) | 507, 601, 1812, 1817, 1901 |
| Hsp92I | GRCGYC | 1 cut(s) | 132 |
| Hsp92II | CATG | 8 cut(s) | 9, 556, 768, 842, 857, 983, 1013, 1350 |
| HspAI | GCGC | 4 cut(s) | 45, 51, 1662, 1841 |
| Ksp22I | TGATCA | 1 cut(s) | 373 |
| Kzo9I | GATC | 6 cut(s) | 373, 778, 982, 1284, 1394, 1439 |
| LmnI | GCTCC | 6 cut(s) | 240, 300, 321, 661, 1056, 1857 |
| Lsp1109I | GCAGC | 8 cut(s) | 48, 74, 445, 784, 787, 790, 1365, 1825 |
| LweI | GCATC | 4 cut(s) | 30, 1030, 1206, 1741 |
| MaeI | CTAG | 3 cut(s) | 357, 579, 1739 |
| MaeII | ACGT | 5 cut(s) | 507, 601, 1812, 1817, 1901 |
| MaeIII | GTNAC | 5 cut(s) | 619, 910, 1734, 1813, 1885 |
| MalI | GATC | 6 cut(s) | 375, 780, 984, 1286, 1396, 1441 |
| MboI | GATC | 6 cut(s) | 373, 778, 982, 1284, 1394, 1439 |
| MhlI | GDGCHC | 2 cut(s) | 237, 1532 |
| MluCI | AATT | 9 cut(s) | 557, 730, 741, 751, 944, 1069, 1322, 1652, 1829 |
| MlyI | GAGTC | 4 cut(s) | 173, 844, 1507, 1795 |
| MmeI | TCCRAC | 6 cut(s) | 278, 413, 668, 1021, 1098, 1727 |
| MseI | TTAA | 5 cut(s) | 387, 561, 941, 1482, 1697 |
| MslI | CAYNNNNRTG | 2 cut(s) | 230, 1434 |
| MspA1I | CMGCKG | 1 cut(s) | 87 |
| MspI | CCGG | 4 cut(s) | 313, 319, 1022, 1565 |
| MspR9I | CCNGG | 3 cut(s) | 633, 1023, 1566 |
| Mva1269I | GAATGC | 2 cut(s) | 1089, 1600 |
| MvaI | CCWGG | 1 cut(s) | 633 |
| MvnI | CGCG | 3 cut(s) | 158, 1662, 1664 |
| NciI | CCSGG | 2 cut(s) | 1023, 1566 |
| NdeII | GATC | 6 cut(s) | 373, 778, 982, 1284, 1394, 1439 |
| NlaIII | CATG | 8 cut(s) | 9, 556, 768, 842, 857, 983, 1013, 1350 |
| NlaIV | GGNNCC | 6 cut(s) | 311, 317, 657, 874, 1158, 1169 |
| NmuCI | GTSAC | 1 cut(s) | 1734 |
| NsbI | TGCGCA | 2 cut(s) | 52, 1842 |
| NspI | RCATGY | 1 cut(s) | 857 |
| OliI | CACNNNNGTG | 1 cut(s) | 230 |
| PagI | TCATGA | 2 cut(s) | 979, 1009 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 132, 1809 |
| PctI | GAATGC | 2 cut(s) | 1089, 1600 |
| PfeI | GAWTC | 4 cut(s) | 153, 436, 1619, 1676 |
| PleI | GAGTC | 4 cut(s) | 173, 843, 1507, 1794 |
| PpsI | GAGTC | 4 cut(s) | 173, 843, 1507, 1794 |
| Ppu21I | YACGTR | 1 cut(s) | 602 |
| PpuMI | RGGWCCY | 1 cut(s) | 1157 |
| Psp1406I | AACGTT | 2 cut(s) | 507, 1812 |
| Psp5II | RGGWCCY | 1 cut(s) | 1157 |
| Psp6I | CCWGG | 1 cut(s) | 631 |
| PspGI | CCWGG | 1 cut(s) | 631 |
| PspN4I | GGNNCC | 6 cut(s) | 311, 317, 657, 874, 1158, 1169 |
| PspPI | GGNCC | 2 cut(s) | 704, 1157 |
| PspPPI | RGGWCCY | 1 cut(s) | 1157 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 574, 606 |
| PvuII | CAGCTG | 1 cut(s) | 87 |
| RsaI | GTAC | 9 cut(s) | 62, 613, 758, 829, 1096, 1220, 1417, 1779, 1808 |
| RsaNI | GTAC | 9 cut(s) | 61, 612, 757, 828, 1095, 1219, 1416, 1778, 1807 |
| RseI | CAYNNNNRTG | 2 cut(s) | 230, 1434 |
| SalI | GTCGAC | 1 cut(s) | 134 |
| SaqAI | TTAA | 5 cut(s) | 387, 561, 941, 1482, 1697 |
| Sau3AI | GATC | 6 cut(s) | 373, 778, 982, 1284, 1394, 1439 |
| Sau96I | GGNCC | 2 cut(s) | 704, 1157 |
| SchI | GAGTC | 4 cut(s) | 173, 844, 1507, 1795 |
| ScrFI | CCNGG | 3 cut(s) | 633, 1023, 1566 |
| SduI | GDGCHC | 2 cut(s) | 237, 1532 |
| SfaNI | GCATC | 4 cut(s) | 30, 1030, 1206, 1741 |
| SfcI | CTRYAG | 2 cut(s) | 646, 1632 |
| SinI | GGWCC | 2 cut(s) | 704, 1157 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 230, 1434 |
| SmlI | CTYRAG | 1 cut(s) | 1305 |
| SmoI | CTYRAG | 1 cut(s) | 1305 |
| Sse9I | AATT | 9 cut(s) | 557, 730, 741, 751, 944, 1069, 1322, 1652, 1829 |
| SspMI | CTAG | 3 cut(s) | 357, 579, 1739 |
| StyD4I | CCNGG | 3 cut(s) | 631, 1021, 1564 |
| TaaI | ACNGT | 5 cut(s) | 574, 1094, 1422, 1540, 1734 |
| TaiI | ACGT | 5 cut(s) | 510, 604, 1815, 1820, 1904 |
| TaqI | TCGA | 6 cut(s) | 135, 285, 495, 642, 777, 1432 |
| TasI | AATT | 9 cut(s) | 557, 730, 741, 751, 944, 1069, 1322, 1652, 1829 |
| TatI | WGTACW | 5 cut(s) | 756, 827, 1094, 1777, 1806 |
| TauI | GCSGC | 4 cut(s) | 83, 104, 132, 539 |
| TfiI | GAWTC | 4 cut(s) | 153, 436, 1619, 1676 |
| Tru1I | TTAA | 5 cut(s) | 387, 561, 941, 1482, 1697 |
| Tru9I | TTAA | 5 cut(s) | 387, 561, 941, 1482, 1697 |
| TscAI | CASTG | 3 cut(s) | 47, 1042, 1319 |
| TseFI | GTSAC | 1 cut(s) | 1734 |
| TseI | GCWGC | 8 cut(s) | 36, 87, 458, 797, 800, 803, 1353, 1838 |
| Tsp45I | GTSAC | 1 cut(s) | 1734 |
| TspDTI | ATGAA | 8 cut(s) | 433, 628, 753, 998, 1017, 1278, 1418, 1584 |
| TspGWI | ACGGA | 3 cut(s) | 409, 416, 1844 |
| TspRI | CASTG | 3 cut(s) | 47, 1042, 1319 |
| VpaK11BI | GGWCC | 2 cut(s) | 704, 1157 |
| XapI | RAATTY | 3 cut(s) | 557, 944, 1069 |
| XceI | RCATGY | 1 cut(s) | 857 |
| XmiI | GTMKAC | 2 cut(s) | 135, 1343 |
| XspI | CTAG | 3 cut(s) | 357, 579, 1739 |