RLG00000028051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001442
Physical Location & Seq
Forward (+)
18109962 .. 18110432
471 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028051

Sequence Viewer

Length: 471 bp
ATGTATATTTCCTGGCAGTTCATTGATCTTCCTGATAATCCTGCTGCTGCTGTTGGATTTCAGTTCAATCTTACTGCAAGGAGTCATGCTAATAAAAGACATCTGAGTTTTGTTAGTGGAACCCTAAAGAATGGAAGTACTTTGGATGATAGACCAGTTACATTCAGAGGGAGTAATACAAATATATTGAAATTCAGTTTATTTCCACGGATATACCATAATCTACATGATCTAAGGCTCATCCAACCTTTGTTTCATGTGTTTGTACTGGGTTCATTCTTTAATGACACAAGTCAGCTCCAAGCATCCCTTCAAAGGCCTAAGGATGGAATACTTAACACCACATTGTACATCAACTTCCTCTCTGACTACATTGTGGAGATAGAGAAGCAAAATATTATGGGTCCTGGAAGGCAACAGGTGCTTCCCTTAAGTAAACAAGATCCATCCTTTCAGTATGTTCCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.83

Weight (kDa)

9.17

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 3 cut(s) 139, 267, 350
AfiI CCNNNNNNNGG 2 cut(s) 315, 326
AflII CTTAAG 1 cut(s) 430
AgsI TTSAA 3 cut(s) 67, 190, 314
AjnI CCWGG 2 cut(s) 11, 406
AjuI GAANNNNNNNTTGG 4 cut(s) 237, 269, 294, 326
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
AlwI GGATC 1 cut(s) 437
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 44, 47
ApoI RAATTY 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 404
AvaII GGWCC 1 cut(s) 404
AxyI CCTNAGG 1 cut(s) 321
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BbvI GCAGC 2 cut(s) 31, 34
BccI CCATC 2 cut(s) 320, 454
BciT130I CCWGG 2 cut(s) 13, 408
BfrI CTTAAG 1 cut(s) 430
BisI GCNGC 2 cut(s) 45, 48
BlsI GCNGC 2 cut(s) 46, 49
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 13, 408
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 2 cut(s) 121, 405
BmrFI CCNGG 2 cut(s) 13, 408
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 278
BoxI GACNNNNGTC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 326
Bse1I ACTGG 2 cut(s) 155, 273
Bse21I CCTNAGG 1 cut(s) 321
BseBI CCWGG 2 cut(s) 13, 408
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 5 cut(s) 151, 240, 305, 331, 446
BseLI CCNNNNNNNGG 2 cut(s) 315, 326
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 155, 273
BseXI GCAGC 2 cut(s) 31, 34
BshFI GGCC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 315, 326
BsnI GGCC 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 25, 229, 442
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 121, 405
BspPI GGATC 1 cut(s) 437
BspTI CTTAAG 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 2 cut(s) 155, 273
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 3 cut(s) 25, 229, 442
Bst2UI CCWGG 2 cut(s) 13, 408
BstAFI CTTAAG 1 cut(s) 430
BstAPI GCANNNNNTGC 1 cut(s) 421
BstAUI TGTACA 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 104, 233, 321
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 5 cut(s) 151, 240, 305, 331, 446
BstKTI GATC 3 cut(s) 28, 232, 445
BstMBI GATC 3 cut(s) 25, 229, 442
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstNI CCWGG 2 cut(s) 13, 408
BstPAI GACNNNNGTC 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 11, 406
BstV1I GCAGC 2 cut(s) 31, 34
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
Bsu36I CCTNAGG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 5 cut(s) 151, 240, 305, 331, 446
Cfr13I GGNCC 1 cut(s) 404
Csp6I GTAC 3 cut(s) 138, 266, 349
CviAII CATG 4 cut(s) 86, 227, 257, 465
CviJI RGCY 3 cut(s) 238, 298, 319
CviKI_1 RGCY 3 cut(s) 238, 298, 319
CviQI GTAC 3 cut(s) 138, 266, 349
DdeI CTNAG 3 cut(s) 104, 233, 321
DpnI GATC 3 cut(s) 27, 231, 444
DpnII GATC 3 cut(s) 25, 229, 442
Eco147I AGGCCT 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 404
Eco81I CCTNAGG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 11, 406
FaeI CATG 4 cut(s) 89, 230, 260, 468
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 4 cut(s) 85, 226, 256, 464
Fnu4HI GCNGC 2 cut(s) 45, 48
FokI GGATG 5 cut(s) 158, 227, 292, 338, 433
Fsp4HI GCNGC 2 cut(s) 45, 48
GluI GCNGC 2 cut(s) 45, 48
HaeIII GGCC 1 cut(s) 319
Hin1II CATG 4 cut(s) 89, 230, 260, 468
HinfI GANTC 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 3 cut(s) 105, 167, 367
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 437
HpyAV CCTTC 2 cut(s) 320, 405
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 3 cut(s) 104, 233, 321
Hsp92II CATG 4 cut(s) 89, 230, 260, 468
Kzo9I GATC 3 cut(s) 25, 229, 442
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 8 cut(s) 25, 45, 54, 168, 254, 393, 404, 420
Lsp1109I GCAGC 2 cut(s) 31, 34
LweI GCATC 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 27, 231, 444
MboI GATC 3 cut(s) 25, 229, 442
MboII GAAGA 1 cut(s) 20
MflI RGATCY 1 cut(s) 442
MluCI AATT 1 cut(s) 191
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 2 cut(s) 34, 268
MnlI CCTC 2 cut(s) 161, 371
MseI TTAA 4 cut(s) 282, 336, 431, 469
MspCI CTTAAG 1 cut(s) 430
MspR9I CCNGG 2 cut(s) 13, 408
MvaI CCWGG 2 cut(s) 13, 408
MwoI GCNNNNNNNGC 1 cut(s) 421
NdeII GATC 3 cut(s) 25, 229, 442
NlaIII CATG 4 cut(s) 89, 230, 260, 468
NlaIV GGNNCC 2 cut(s) 121, 405
PceI AGGCCT 1 cut(s) 319
PfoI TCCNGGA 1 cut(s) 406
PkrI GCNGC 2 cut(s) 46, 49
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PpuMI RGGWCCY 1 cut(s) 404
PshAI GACNNNNGTC 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 404
Psp6I CCWGG 2 cut(s) 11, 406
PspGI CCWGG 2 cut(s) 11, 406
PspN4I GGNNCC 2 cut(s) 121, 405
PspPI GGNCC 1 cut(s) 404
PspPPI RGGWCCY 1 cut(s) 404
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 3 cut(s) 139, 267, 350
RsaNI GTAC 3 cut(s) 138, 266, 349
SaqAI TTAA 4 cut(s) 282, 336, 431, 469
SatI GCNGC 2 cut(s) 45, 48
Sau3AI GATC 3 cut(s) 25, 229, 442
Sau96I GGNCC 1 cut(s) 404
ScaI AGTACT 1 cut(s) 139
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 13, 408
SetI ASST 3 cut(s) 250, 300, 423
SfaNI GCATC 1 cut(s) 314
SinI GGWCC 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 1 cut(s) 191
SseBI AGGCCT 1 cut(s) 319
SspI AATATT 1 cut(s) 397
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 2 cut(s) 11, 406
TasI AATT 1 cut(s) 191
TatI WGTACW 3 cut(s) 137, 265, 348
Tru1I TTAA 4 cut(s) 282, 336, 431, 469
Tru9I TTAA 4 cut(s) 282, 336, 431, 469
TseI GCWGC 2 cut(s) 44, 47
TspDTI ATGAA 3 cut(s) 10, 245, 264
TspGWI ACGGA 1 cut(s) 223
Vha464I CTTAAG 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.