FvH4_6g27770

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001297
Physical Location & Seq
Reverse (-)
21409809 .. 21417570
7762 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27770.t1

Sequence Viewer

Length: 1023 bp
ATGGCATCATCGAAACCAGCCAGCTGCTTTTCCCCCTCTGATCAATCAAGCCGCAGTCAACGCACCACTGATAATGATTCAGTCATTGAAGTCCCGGAAGACTATGTTATCCCAAATCAGGAATCTGCAATCTCTGATGGGACTATCCTTGCCGCAATCCCCACCATTGACATGACACAATGGGTCCTAATCAATCAGTCCGCAAACAATGATGAACTTGAGAAGTTGCACTCAGCTTGCAAAGAATGGGGATTTTTTCAGTTGGTCAACCATGGAGTTAGCTCCGAACTGCTGGACAAAGTGAATCAAGAATTAGAGAAATTTTTCAAGCTTCCCTTGGAAGAGAAAATGAGATACAAAGTAAGGCCAGGTGATGTTGAAGGCTATGGAATTTTCATCAAATCCCAAGATCCAAAACTAGAGTGGGGTATCAGATTCTTCATGATTACCAACCCTATTGATAGAAGGAAACCCCATCTTTTCCCAGAGCTCCCTACATCCCTGAGGAATACCTTAGAGAGCTTCATGTCGGAATTACAAAGGATTGCCCAGACCCTTTTAGGGTTGATGGCAAAACTTCTAAAGGTGAAGATGGAGGAGATGGAAGAGTTGTTTGAAGATGGTCTGCAGACAGTGAGGATGAGTCACTATCCTCCATGCCCAAACCCTGAGCTAGTTGTTGGCATCAAGCCTCATTCTGATGGTAGTGGCATCACGATTGTGCACCAGGCTAATGAAGTTCAAGGCCTTCAAATTAGAAAAGATGAGGTTTGGTTGCCTGTGTGCTTAGATCATGATGCCTTTGTTGTCAATCTTGGAGACATTCTAGAGATACTGACCAATGGGATTTATAAAAGCGTGGAGCACAGAGTAACTGTGAACTCAGAAAAAGAAAGGATTTCAATTGCTATGTTCTTCATGCCCAGACCTGGGACAGAAATTGGACCGCTGACATCCCTGAGAGATCCTCAGAAGCCACCATCTTCTGGAAATACAGGGATGGAAAAATTTGTCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

341

Amino Acids

38.44

Weight (kDa)

5.32

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 162 4.1e-28 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 211 - 308 3.7e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 852
AccB7I CCANNNNNTGG 1 cut(s) 986
AciI CCGC 4 cut(s) 52, 153, 201, 947
AclWI GGATC 2 cut(s) 404, 959
AcsI RAATTY 3 cut(s) 320, 390, 1007
AfiI CCNNNNNNNGG 5 cut(s) 118, 561, 929, 930, 986
AgsI TTSAA 7 cut(s) 89, 328, 380, 617, 743, 752, 903
AjnI CCWGG 3 cut(s) 367, 726, 928
AleI CACNNNNGTG 1 cut(s) 719
AluBI AGCT 7 cut(s) 24, 236, 282, 331, 490, 522, 673
AluI AGCT 7 cut(s) 24, 236, 282, 331, 490, 522, 673
Alw21I GWGCWC 3 cut(s) 492, 726, 867
Alw26I GTCTC 1 cut(s) 813
Alw44I GTGCAC 1 cut(s) 722
AlwI GGATC 2 cut(s) 404, 959
AoxI GGCC 2 cut(s) 365, 745
ApaLI GTGCAC 1 cut(s) 722
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 3 cut(s) 320, 390, 1007
Asp700I GAANNNNTTC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 184, 944
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 383, 598
AvaII GGWCC 2 cut(s) 184, 944
AxyI CCTNAGG 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 726
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 3 cut(s) 492, 726, 867
BbvI GCAGC 1 cut(s) 11
BccI CCATC 9 cut(s) 131, 483, 562, 586, 595, 614, 695, 988, 994
BciT130I CCWGG 3 cut(s) 369, 728, 930
BclI TGATCA 1 cut(s) 40
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 813
BfaI CTAG 3 cut(s) 419, 674, 827
BfmI CTRYAG 1 cut(s) 626
BisI GCNGC 3 cut(s) 25, 52, 153
BlsI GCNGC 3 cut(s) 26, 53, 154
Bme1390I CCNGG 4 cut(s) 95, 369, 728, 930
Bme18I GGWCC 2 cut(s) 184, 944
BmgT120I GGNCC 2 cut(s) 184, 944
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 4 cut(s) 95, 369, 728, 930
BmsI GCATC 4 cut(s) 14, 693, 720, 787
BpiI GAAGAC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 952, 984
Bpu10I CCTNAGC 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 271, 336, 929
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 561, 929, 930, 986
Bse21I CCTNAGG 1 cut(s) 503
BseBI CCWGG 3 cut(s) 369, 728, 930
BseDI CCNNGG 3 cut(s) 271, 336, 929
BseGI GGATG 4 cut(s) 497, 645, 953, 1005
BseLI CCNNNNNNNGG 5 cut(s) 118, 561, 929, 930, 986
BseMII CTCAG 6 cut(s) 246, 494, 660, 897, 950, 983
BseRI GAGGAG 1 cut(s) 611
BseSI GKGCMC 1 cut(s) 726
BseXI GCAGC 1 cut(s) 11
BshFI GGCC 2 cut(s) 367, 747
BsiHKAI GWGCWC 3 cut(s) 492, 726, 867
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 3 cut(s) 77, 154, 946
BslI CCNNNNNNNGG 5 cut(s) 118, 561, 929, 930, 986
BsmAI GTCTC 1 cut(s) 813
BsmFI GGGAC 3 cut(s) 77, 154, 946
BsnI GGCC 2 cut(s) 367, 747
Bsp1286I GDGCHC 3 cut(s) 492, 726, 867
Bsp143I GATC 4 cut(s) 40, 409, 790, 964
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 4 cut(s) 52, 153, 201, 947
BspANI GGCC 2 cut(s) 367, 747
BspCNI CTCAG 6 cut(s) 245, 495, 661, 896, 951, 982
BspHI TCATGA 2 cut(s) 441, 793
BspLI GGNNCC 1 cut(s) 185
BspMAI CTGCAG 1 cut(s) 630
BspPI GGATC 2 cut(s) 404, 959
BssECI CCNNGG 3 cut(s) 271, 336, 929
BssMI GATC 4 cut(s) 40, 409, 790, 964
BssT1I CCWWGG 2 cut(s) 271, 336
Bst2UI CCWGG 3 cut(s) 369, 728, 930
Bst4CI ACNGT 2 cut(s) 634, 877
Bst6I CTCTTC 2 cut(s) 336, 600
BstC8I GCNNGC 2 cut(s) 22, 238
BstDEI CTNAG 8 cut(s) 232, 503, 514, 669, 787, 883, 959, 969
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 4 cut(s) 497, 645, 953, 1005
BstKTI GATC 4 cut(s) 43, 412, 793, 967
BstMAI GTCTC 1 cut(s) 813
BstMBI GATC 4 cut(s) 40, 409, 790, 964
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 3 cut(s) 369, 728, 930
BstSCI CCNGG 4 cut(s) 93, 367, 726, 928
BstSFI CTRYAG 1 cut(s) 626
BstSLI GKGCMC 1 cut(s) 726
BstV1I GCAGC 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 2 cut(s) 409, 964
BstYI RGATCY 2 cut(s) 409, 964
Bsu36I CCTNAGG 1 cut(s) 503
BsuRI GGCC 2 cut(s) 367, 747
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 4 cut(s) 497, 645, 953, 1005
BtsIMutI CAGTG 2 cut(s) 66, 639
Cac8I GCNNGC 2 cut(s) 22, 238
CciI TCATGA 2 cut(s) 441, 793
Cfr13I GGNCC 2 cut(s) 184, 944
CviAII CATG 7 cut(s) 172, 272, 442, 526, 657, 794, 919
DdeI CTNAG 8 cut(s) 232, 503, 514, 669, 787, 883, 959, 969
DpnI GATC 4 cut(s) 42, 411, 792, 966
DpnII GATC 4 cut(s) 40, 409, 790, 964
Eam1104I CTCTTC 2 cut(s) 336, 600
EarI CTCTTC 2 cut(s) 336, 600
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 2 cut(s) 271, 336
Eco147I AGGCCT 1 cut(s) 747
Eco24I GRGCYC 1 cut(s) 492
Eco47I GGWCC 2 cut(s) 184, 944
Eco53kI GAGCTC 1 cut(s) 490
Eco81I CCTNAGG 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 3 cut(s) 367, 726, 928
EcoT14I CCWWGG 2 cut(s) 271, 336
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 2 cut(s) 271, 336
FaeI CATG 7 cut(s) 175, 275, 445, 529, 660, 797, 922
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 3 cut(s) 77, 154, 946
FatI CATG 7 cut(s) 171, 271, 441, 525, 656, 793, 918
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 3 cut(s) 25, 52, 153
FokI GGATG 4 cut(s) 484, 652, 940, 1012
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 3 cut(s) 25, 52, 153
FspBI CTAG 3 cut(s) 419, 674, 827
GluI GCNGC 3 cut(s) 25, 52, 153
HaeIII GGCC 2 cut(s) 367, 747
HapII CCGG 1 cut(s) 95
Hin1II CATG 7 cut(s) 175, 275, 445, 529, 660, 797, 922
HincII GTYRAC 2 cut(s) 59, 268
HindII GTYRAC 2 cut(s) 59, 268
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 5 cut(s) 77, 122, 304, 435, 643
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 383, 598
Hpy166II GTNNAC 4 cut(s) 59, 268, 724, 880
Hpy188I TCNGA 8 cut(s) 40, 136, 286, 434, 532, 700, 886, 972
Hpy188III TCNNGA 8 cut(s) 119, 308, 442, 715, 794, 827, 987, 1015
Hpy8I GTNNAC 4 cut(s) 59, 268, 724, 880
HpyAV CCTTC 3 cut(s) 374, 459, 758
HpyCH4III ACNGT 2 cut(s) 634, 877
HpyCH4V TGCA 5 cut(s) 128, 229, 240, 628, 724
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 8 cut(s) 232, 503, 514, 669, 787, 883, 959, 969
Hsp92II CATG 7 cut(s) 175, 275, 445, 529, 660, 797, 922
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 4 cut(s) 40, 409, 790, 964
LmnI GCTCC 3 cut(s) 287, 495, 862
Lsp1109I GCAGC 1 cut(s) 11
LweI GCATC 4 cut(s) 14, 693, 720, 787
MaeI CTAG 3 cut(s) 419, 674, 827
MaeIII GTNAC 2 cut(s) 644, 871
MalI GATC 4 cut(s) 42, 411, 792, 966
MboI GATC 4 cut(s) 40, 409, 790, 964
MboII GAAGA 8 cut(s) 110, 353, 430, 601, 617, 629, 907, 975
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 2 cut(s) 409, 964
MhlI GDGCHC 3 cut(s) 492, 726, 867
MluCI AATT 8 cut(s) 311, 320, 390, 533, 753, 903, 939, 1007
MlyI GAGTC 1 cut(s) 652
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 8 cut(s) 46, 498, 589, 630, 663, 702, 760, 978
MroXI GAANNNNTTC 1 cut(s) 323
MslI CAYNNNNRTG 3 cut(s) 170, 699, 719
MspA1I CMGCKG 2 cut(s) 24, 949
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 4 cut(s) 95, 369, 728, 930
MunI CAATTG 1 cut(s) 903
MvaI CCWGG 3 cut(s) 369, 728, 930
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 95
NcoI CCATGG 1 cut(s) 271
NdeII GATC 4 cut(s) 40, 409, 790, 964
NlaIII CATG 7 cut(s) 175, 275, 445, 529, 660, 797, 922
NlaIV GGNNCC 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 644
OliI CACNNNNGTG 1 cut(s) 719
PagI TCATGA 2 cut(s) 441, 793
PceI AGGCCT 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 4 cut(s) 77, 122, 304, 435
PflMI CCANNNNNTGG 1 cut(s) 986
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 3 cut(s) 26, 53, 154
PleI GAGTC 1 cut(s) 651
PpsI GAGTC 1 cut(s) 651
PpuMI RGGWCCY 1 cut(s) 184
PsiI TTATAA 1 cut(s) 852
Psp124BI GAGCTC 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 3 cut(s) 367, 726, 928
PspGI CCWGG 3 cut(s) 367, 726, 928
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 2 cut(s) 184, 944
PspPPI RGGWCCY 1 cut(s) 184
PstI CTGCAG 1 cut(s) 630
PsuI RGATCY 2 cut(s) 409, 964
PvuII CAGCTG 1 cut(s) 24
RseI CAYNNNNRTG 3 cut(s) 170, 699, 719
SacI GAGCTC 1 cut(s) 492
SatI GCNGC 3 cut(s) 25, 52, 153
Sau3AI GATC 4 cut(s) 40, 409, 790, 964
Sau96I GGNCC 2 cut(s) 184, 944
SchI GAGTC 1 cut(s) 652
ScrFI CCNGG 4 cut(s) 95, 369, 728, 930
SduI GDGCHC 3 cut(s) 492, 726, 867
SfaNI GCATC 4 cut(s) 14, 693, 720, 787
SfcI CTRYAG 1 cut(s) 626
SinI GGWCC 2 cut(s) 184, 944
SmiMI CAYNNNNRTG 3 cut(s) 170, 699, 719
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 8 cut(s) 311, 320, 390, 533, 753, 903, 939, 1007
SseBI AGGCCT 1 cut(s) 747
SsiI CCGC 4 cut(s) 52, 153, 201, 947
SspMI CTAG 3 cut(s) 419, 674, 827
SstI GAGCTC 1 cut(s) 492
StuI AGGCCT 1 cut(s) 747
StyD4I CCNGG 4 cut(s) 93, 367, 726, 928
StyI CCWWGG 2 cut(s) 271, 336
TaaI ACNGT 2 cut(s) 634, 877
TaqI TCGA 1 cut(s) 11
TasI AATT 8 cut(s) 311, 320, 390, 533, 753, 903, 939, 1007
TauI GCSGC 2 cut(s) 54, 155
TfiI GAWTC 4 cut(s) 77, 122, 304, 435
TscAI CASTG 2 cut(s) 73, 639
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 6 cut(s) 228, 385, 430, 514, 750, 907
TspRI CASTG 2 cut(s) 73, 639
Van91I CCANNNNNTGG 1 cut(s) 986
VneI GTGCAC 1 cut(s) 722
VpaK11BI GGWCC 2 cut(s) 184, 944
XapI RAATTY 3 cut(s) 320, 390, 1007
XbaI TCTAGA 1 cut(s) 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 3 cut(s) 419, 674, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.