Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001297

Physical Location & Seq

Genomic Coordinates Forward (+)

36139905 .. 36143766

Gene Structure 3862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1268500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCACTATCGCAGCTCCCAGCAGGCTCTCAAAGCTCTAATTCGCTATTCAGCGTACTAGAGATCGCCAAAGAGCCCTTAACCTCAGTCCCACAATGTTACGTGCGTTTGGAACAAGAGCCAACTCCATCTGAACTCTCTGATAGTCATAAGGGCACCTTCCCTTCTATCCCTACTATCGATATGACGAAATTTGTTAACGGAGAAACCTCCGACTTTGCAAGTCAACTAGAAAAACTGCACTCAACTTGCAAAGATTGGGGCATTTTTCAGTTGGTGAACCATGGAGTTAGCCCTATGCTGTTAGAGAAGCTGAAACATGAGGTTCAAGTTTTCTTTAAGCTTCCCTTGGAAGAGAAAATGAAATATACAATAAGATCAGGTGATTTTGAAGGGTATGGAAACATAGTCAAGACCAAAGACCAAAAGCTTGACTGGGGTGATAGGTTCTATATGATAACCAACCCTGTTCATCGAAGAAATCCGTACCTCTTCGCGGAGCTCCCTTCTTCCCTCAGGAATACCTTGGAGTCATACTTTATGGAATTGGATCAACTTGCTATGAGACTTCTTGGGTTTATGGCGAAGGCTCTGAAAATAGAGATGAGTGAGATAGAGGAGTTGTTTGATAAAGAAGGGATGCAATCAGTGAGGATGACATACTATCGTCCATGTCCACAACCAGAGCTGGTTGTAGGGCTCACACCTCACTCAGATGCAACTGGGATCACCATCCTCAACCAGCTTAATGGAGACGGTCTCCAAATTAAAAAAGACGGGGTTTGGATGCCTGTAAAATTCCATAAAGATGCTTTTGTGGTGAATGTAGGGGACATCTGTGAGATGCTGAGCAACGGAGTGTACAAAAGCATTGAACACAGGGTAATGGTGAATTCCGAGAAGGAAAGGGTGTCGGTTGCGATGTTCTTCGTCCCTAAATATGAGGCAGAGATTGGGCCACTCAGAAGTTTGGTATCCCCCCAAAACCCACCACTGTTCAAAAGGATTGGGACGGAAAAGTACGTGAACGATTTCTTCTCCCGCCCTAGGCTTGGTGGAAAATCGTATTTGGAGCAGATGAAAATCCAAAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

366

Amino Acids

41.6

Weight (kDa)

6.28

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	57 - 157	3.6e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 311	2.7e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001297)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27770 FvH4_6g28170
malus_domestica	MD05G1292600.v1.1 MD05G1292700.v1.1 MD10G1268500.v1.1
prunus_persica	Prupe.4G072700_v2.0.a1
pyrus_communis	pycom05g26880 pycom05g26910 pycom10g22500
rosa_chinensis	RchiOBHm_Chr2g0132141 RchiOBHm_Chr2g0132151 RchiOBHm_Chr2g0132181 RchiOBHm_Chr5g0012711 RchiOBHm_Chr5g0026041
rosa_laevigata	RLG00000019231 RLG00000019232 RLG00000019237 RLG00000031933 RLG00000031934 RLG00000031936 RLG00000031949 RLG00000031950
rosa_multiflora	Rmu_sc0004583.1_g000011 Rmu_sc0007569.1_g000003 Rmu_sc0009538.1_g000009 Rmu_sc0009538.1_g000015
rosa_roxburghii	Rroxscaffold_1G00063920 Rroxscaffold_2G00112310 Rroxscaffold_2G00112360 Rroxscaffold_2G00112370
rosa_rugosa	Rorug02G0302500 Rorug02G0302600 Rorug05G0003800 Rorug05G0003900
rosa_samantha	Rh2AG355600 Rh2AG355700 Rh2AG356000 Rh2BG361700 Rh2BG362100 Rh2CG339200 Rh2DG378600 Rh2DG378800 Rh2DG379200 Rh5AG097600 Rh5AG182600 Rh5BG094200 Rh5CG106300 Rh5CG199100 Rh5DG093000 Rh5DG181600
rosa_wichuraiana	Rw2G028870 Rw2G028880 Rw2G028910 Rw5G008550 Rw5G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	1 cut(s)	497
AciI	CCGC	2 cut(s)	497, 1042
AclWI	GGATC	2 cut(s)	558, 734
AcsI	RAATTY	3 cut(s)	191, 797, 892
AfaI	GTAC	4 cut(s)	57, 488, 863, 1022
AfiI	CCNNNNNNNGG	3 cut(s)	496, 1047, 1052
AgsI	TTSAA	4 cut(s)	329, 392, 875, 1000
AluBI	AGCT	8 cut(s)	16, 36, 313, 343, 430, 502, 688, 745
AluI	AGCT	8 cut(s)	16, 36, 313, 343, 430, 502, 688, 745
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	3 cut(s)	559, 747, 764
AlwI	GGATC	2 cut(s)	558, 734
AoxI	GGCC	1 cut(s)	956
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	3 cut(s)	191, 797, 892
Asp700I	GAANNNNTTC	1 cut(s)	1031
AspA2I	CCTAGG	1 cut(s)	1046
AspS9I	GGNCC	1 cut(s)	956
AsuHPI	GGTGA	6 cut(s)	289, 395, 452, 721, 832, 901
AvrII	CCTAGG	1 cut(s)	1046
AxyI	CCTNAGG	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	3 cut(s)	78, 504, 702
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	136, 740
BciVI	GTATCC	1 cut(s)	985
BcoDI	GTCTC	3 cut(s)	559, 747, 764
BfaI	CTAG	3 cut(s)	59, 230, 1047
BfuI	GTATCC	1 cut(s)	985
BisI	GCNGC	1 cut(s)	14
BlnI	CCTAGG	1 cut(s)	1046
BlpI	GCTNAGC	1 cut(s)	848
BlsI	GCNGC	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	956
BmiI	GGNNCC	1 cut(s)	157
BmrI	ACTGGG	2 cut(s)	445, 732
BmsI	GCATC	5 cut(s)	630, 706, 777, 799, 834
BmuI	ACTGGG	2 cut(s)	445, 732
BplI	GAGNNNNNCTC	2 cut(s)	744, 776
Bpu1102I	GCTNAGC	1 cut(s)	848
Bsa29I	ATCGAT	1 cut(s)	180
BsaAI	YACGTR	2 cut(s)	103, 1024
BsaBI	GATNNNNATC	2 cut(s)	731, 1082
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	4 cut(s)	283, 348, 525, 1046
Bsc4I	CCNNNNNNNGG	3 cut(s)	496, 1047, 1052
Bse1I	ACTGG	2 cut(s)	440, 727
Bse21I	CCTNAGG	1 cut(s)	515
Bse8I	GATNNNNATC	2 cut(s)	731, 1082
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	4 cut(s)	283, 348, 525, 1046
BseGI	GGATG	4 cut(s)	645, 660, 732, 792
BseJI	GATNNNNATC	2 cut(s)	731, 1082
BseLI	CCNNNNNNNGG	3 cut(s)	496, 1047, 1052
BseMII	CTCAG	5 cut(s)	99, 529, 726, 839, 976
BseNI	ACTGG	2 cut(s)	440, 727
BseRI	GAGGAG	1 cut(s)	632
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	958
BshNI	GGYRCC	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	504
BslFI	GGGAC	4 cut(s)	74, 845, 917, 1024
BslI	CCNNNNNNNGG	3 cut(s)	496, 1047, 1052
BsmAI	GTCTC	3 cut(s)	559, 747, 764
BsmBI	CGTCTC	1 cut(s)	747
BsmFI	GGGAC	4 cut(s)	74, 845, 917, 1024
BsnI	GGCC	1 cut(s)	958
Bso31I	GGTCTC	1 cut(s)	764
Bsp1286I	GDGCHC	4 cut(s)	78, 158, 504, 702
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	4 cut(s)	63, 377, 550, 726
Bsp1720I	GCTNAGC	1 cut(s)	848
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	2 cut(s)	497, 1042
BspANI	GGCC	1 cut(s)	958
BspCNI	CTCAG	5 cut(s)	98, 528, 725, 840, 975
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	558, 734
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	764
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	2 cut(s)	440, 727
BssECI	CCNNGG	4 cut(s)	283, 348, 525, 1046
BssMI	GATC	4 cut(s)	63, 377, 550, 726
BssT1I	CCWWGG	4 cut(s)	283, 348, 525, 1046
Bst4CI	ACNGT	2 cut(s)	758, 996
Bst6I	CTCTTC	2 cut(s)	348, 497
BstAUI	TGTACA	1 cut(s)	861
BstBAI	YACGTR	2 cut(s)	103, 1024
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	5 cut(s)	85, 515, 712, 848, 962
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	4 cut(s)	645, 660, 732, 792
BstFNI	CGCG	1 cut(s)	497
BstKTI	GATC	4 cut(s)	66, 380, 553, 729
BstMAI	GTCTC	3 cut(s)	559, 747, 764
BstMBI	GATC	4 cut(s)	63, 377, 550, 726
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	749
Bsu15I	ATCGAT	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	515
BsuI	GTATCC	1 cut(s)	985
BsuRI	GGCC	1 cut(s)	958
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	935
BtsCI	GGATG	4 cut(s)	645, 660, 732, 792
BtsIMutI	CAGTG	2 cut(s)	654, 992
Cac8I	GCNNGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	956
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	4 cut(s)	56, 487, 862, 1021
CviAII	CATG	3 cut(s)	284, 320, 672
CviQI	GTAC	4 cut(s)	56, 487, 862, 1021
DdeI	CTNAG	5 cut(s)	85, 515, 712, 848, 962
DpnI	GATC	4 cut(s)	65, 379, 552, 728
DpnII	GATC	4 cut(s)	63, 377, 550, 726
Eam1104I	CTCTTC	2 cut(s)	348, 497
EarI	CTCTTC	2 cut(s)	348, 497
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	4 cut(s)	283, 348, 525, 1046
Eco24I	GRGCYC	3 cut(s)	78, 504, 702
Eco31I	GGTCTC	1 cut(s)	764
Eco53kI	GAGCTC	1 cut(s)	502
Eco81I	CCTNAGG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	502
EcoRI	GAATTC	1 cut(s)	892
EcoT14I	CCWWGG	4 cut(s)	283, 348, 525, 1046
EcoT38I	GRGCYC	3 cut(s)	78, 504, 702
ErhI	CCWWGG	4 cut(s)	283, 348, 525, 1046
Esp3I	CGTCTC	1 cut(s)	747
FaeI	CATG	3 cut(s)	287, 323, 675
FalI	AAGNNNNNCTT	4 cut(s)	143, 175, 332, 364
FaqI	GGGAC	4 cut(s)	74, 845, 917, 1024
FatI	CATG	3 cut(s)	283, 319, 671
FauI	CCCGC	1 cut(s)	1049
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	4 cut(s)	652, 667, 719, 799
FriOI	GRGCYC	3 cut(s)	78, 504, 702
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	3 cut(s)	59, 230, 1047
GluI	GCNGC	1 cut(s)	14
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	958
Hin1II	CATG	3 cut(s)	287, 323, 675
HincII	GTYRAC	2 cut(s)	199, 227
HindII	GTYRAC	2 cut(s)	199, 227
HindIII	AAGCTT	2 cut(s)	341, 428
HinfI	GANTC	1 cut(s)	530
HpaI	GTTAAC	1 cut(s)	199
HphI	GGTGA	6 cut(s)	289, 395, 452, 721, 832, 901
Hpy166II	GTNNAC	6 cut(s)	199, 227, 280, 677, 862, 1027
Hpy188I	TCNGA	7 cut(s)	133, 142, 214, 594, 715, 898, 965
Hpy188III	TCNNGA	2 cut(s)	412, 517
Hpy8I	GTNNAC	6 cut(s)	199, 227, 280, 677, 862, 1027
HpyAV	CCTTC	7 cut(s)	169, 174, 386, 516, 580, 629, 895
HpyCH4III	ACNGT	2 cut(s)	758, 996
HpyCH4IV	ACGT	2 cut(s)	102, 1023
HpyCH4V	TGCA	5 cut(s)	221, 241, 252, 643, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	5 cut(s)	85, 515, 712, 848, 962
HpySE526I	ACGT	2 cut(s)	102, 1023
Hsp92II	CATG	3 cut(s)	287, 323, 675
KspAI	GTTAAC	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	63, 377, 550, 726
LmnI	GCTCC	4 cut(s)	21, 499, 507, 1072
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	5 cut(s)	630, 706, 777, 799, 834
MaeI	CTAG	3 cut(s)	59, 230, 1047
MaeII	ACGT	2 cut(s)	102, 1023
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	4 cut(s)	65, 379, 552, 728
MboI	GATC	4 cut(s)	63, 377, 550, 726
MboII	GAAGA	6 cut(s)	365, 484, 489, 501, 919, 1027
MhlI	GDGCHC	4 cut(s)	78, 158, 504, 702
MluCI	AATT	6 cut(s)	40, 191, 545, 765, 797, 892
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	1031
MseI	TTAA	5 cut(s)	80, 198, 339, 747, 768
MslI	CAYNNNNRTG	2 cut(s)	714, 807
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	4 cut(s)	63, 377, 550, 726
NlaIII	CATG	3 cut(s)	287, 323, 675
NlaIV	GGNNCC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	1031
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
Ppu21I	YACGTR	2 cut(s)	103, 1024
Psp124BI	GAGCTC	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	956
RsaI	GTAC	4 cut(s)	57, 488, 863, 1022
RsaNI	GTAC	4 cut(s)	56, 487, 862, 1021
RseI	CAYNNNNRTG	2 cut(s)	714, 807
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	5 cut(s)	80, 198, 339, 747, 768
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	4 cut(s)	63, 377, 550, 726
Sau96I	GGNCC	1 cut(s)	956
SchI	GAGTC	1 cut(s)	539
SduI	GDGCHC	4 cut(s)	78, 158, 504, 702
SfaNI	GCATC	5 cut(s)	630, 706, 777, 799, 834
SmiMI	CAYNNNNRTG	2 cut(s)	714, 807
Sse9I	AATT	6 cut(s)	40, 191, 545, 765, 797, 892
SsiI	CCGC	2 cut(s)	497, 1042
SspMI	CTAG	3 cut(s)	59, 230, 1047
SstI	GAGCTC	1 cut(s)	504
StyI	CCWWGG	4 cut(s)	283, 348, 525, 1046
TaaI	ACNGT	2 cut(s)	758, 996
TaiI	ACGT	2 cut(s)	105, 1026
TaqI	TCGA	2 cut(s)	180, 475
TasI	AATT	6 cut(s)	40, 191, 545, 765, 797, 892
TatI	WGTACW	1 cut(s)	861
Tru1I	TTAA	5 cut(s)	80, 198, 339, 747, 768
Tru9I	TTAA	5 cut(s)	80, 198, 339, 747, 768
TscAI	CASTG	2 cut(s)	654, 999
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	377, 461, 1094
TspGWI	ACGGA	4 cut(s)	216, 474, 870, 1028
TspRI	CASTG	2 cut(s)	654, 999
XapI	RAATTY	3 cut(s)	191, 797, 892
XmaJI	CCTAGG	1 cut(s)	1046
XmnI	GAANNNNTTC	1 cut(s)	1031
XspI	CTAG	3 cut(s)	59, 230, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.