pycom05g26910

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0001297
Physical Location & Seq
Forward (+)
28046372 .. 28047823
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g26910.2

Sequence Viewer

Length: 633 bp
ATGGCATCACTATCGCAGCTCCCGGTAGGCTCTGAAAGCTCTAATTCGCTATTAAGCGTCATACAGACCGCCAAAGAGCCCTTAACTTCAGTCCCACAATGTTACGTTCGTTTGGAACAAGAACCAACTCCATCTGAACTCTCTGATGATAATAAGGGCACCTTCCGTTCTATCCCTACCATCGACATGACGAAATTAGTTAAGGGAGAAACCTCAGACTTTGCAAATCAACTGGAGAAACTGCACTCAGCTTGCAAAGACTGGGGCATTTTTCAGTCATACTTTGTGGAATTGGACCAACTTGCCATGAGACTTCTTGGGTTTATGGTGAAAGCTCTGAAGACAGAGATGAGAGAGATAGAGGAGTTGTTCGATAAAGACGGGATGCAATCAGTGAGGATGACATACTATCCTCCATGTCCACAACCAGAGCTGGTTATAGGGATCTCACCTCACTCAGATGTATCTGGGATCACCATCCTCAACCAGCTTAATGGAGTTGGCGGTCTCCAAATTAAAAAGGACGGGGCTTGGATGCCTGTCAACATCCAAAAAGATGCCTTTGTGGTGAATGTCGGGGACATCTTTGAGGTTTGTCCTGTATATACTTCTTTCTTCGCACTTCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

211

Amino Acids

23.35

Weight (kDa)

4.72

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AciI CCGC 2 cut(s) 69, 504
AclWI GGATC 2 cut(s) 452, 479
AcuI CTGAAG 2 cut(s) 72, 359
AluBI AGCT 6 cut(s) 19, 39, 251, 335, 433, 490
AluI AGCT 6 cut(s) 19, 39, 251, 335, 433, 490
Alw26I GTCTC 2 cut(s) 304, 512
AlwI GGATC 2 cut(s) 452, 479
ApeKI GCWGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 4 cut(s) 340, 441, 466, 580
AvaII GGWCC 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 28
BccI CCATC 3 cut(s) 139, 188, 485
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 304, 512
BfaI CTAG 1 cut(s) 631
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 23
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 4 cut(s) 14, 375, 525, 547
BmuI ACTGGG 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 476
BsaI GGTCTC 1 cut(s) 512
Bse1I ACTGG 2 cut(s) 237, 266
Bse8I GATNNNNATC 1 cut(s) 476
BseGI GGATG 5 cut(s) 390, 405, 477, 540, 546
BseJI GATNNNNATC 1 cut(s) 476
BseMII CTCAG 3 cut(s) 228, 261, 471
BseNI ACTGG 2 cut(s) 237, 266
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 77, 593
BsmAI GTCTC 2 cut(s) 304, 512
BsmFI GGGAC 2 cut(s) 77, 593
Bso31I GGTCTC 1 cut(s) 512
Bsp1286I GDGCHC 2 cut(s) 81, 161
Bsp143I GATC 2 cut(s) 444, 471
BspACI CCGC 2 cut(s) 69, 504
BspCNI CTCAG 3 cut(s) 227, 260, 470
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 2 cut(s) 452, 479
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 512
BsrI ACTGG 2 cut(s) 237, 266
BssMI GATC 2 cut(s) 444, 471
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 214, 247, 457
BstF5I GGATG 5 cut(s) 390, 405, 477, 540, 546
BstKTI GATC 2 cut(s) 447, 474
BstMAI GTCTC 2 cut(s) 304, 512
BstMBI GATC 2 cut(s) 444, 471
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 444
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 1 cut(s) 444
BtsCI GGATG 5 cut(s) 390, 405, 477, 540, 546
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 1 cut(s) 46
CviAII CATG 3 cut(s) 187, 307, 417
CviJI RGCY 9 cut(s) 19, 30, 39, 79, 251, 335, 433, 490, 530
CviKI_1 RGCY 9 cut(s) 19, 30, 39, 79, 251, 335, 433, 490, 530
DdeI CTNAG 3 cut(s) 214, 247, 457
DpnI GATC 2 cut(s) 446, 473
DpnII GATC 2 cut(s) 444, 471
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 72, 359
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 3 cut(s) 190, 310, 420
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 2 cut(s) 77, 593
FatI CATG 3 cut(s) 186, 306, 416
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 5 cut(s) 397, 412, 464, 533, 547
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 1 cut(s) 631
GluI GCNGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 254
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 46
Hin1II CATG 3 cut(s) 190, 310, 420
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HpaII CCGG 1 cut(s) 23
HphI GGTGA 4 cut(s) 340, 441, 466, 580
Hpy166II GTNNAC 2 cut(s) 422, 544
Hpy188I TCNGA 6 cut(s) 34, 136, 145, 217, 339, 460
Hpy8I GTNNAC 2 cut(s) 422, 544
HpyAV CCTTC 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 4 cut(s) 224, 244, 255, 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 3 cut(s) 214, 247, 457
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 3 cut(s) 190, 310, 420
Kzo9I GATC 2 cut(s) 444, 471
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 9 cut(s) 36, 218, 247, 419, 441, 453, 500, 552, 612
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 4 cut(s) 14, 375, 525, 547
MaeI CTAG 1 cut(s) 631
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 446, 473
MboI GATC 2 cut(s) 444, 471
MboII GAAGA 2 cut(s) 352, 607
MflI RGATCY 1 cut(s) 444
MhlI GDGCHC 2 cut(s) 81, 161
MluCI AATT 4 cut(s) 43, 194, 290, 513
MnlI CCTC 7 cut(s) 223, 355, 390, 423, 462, 491, 583
MseI TTAA 5 cut(s) 53, 83, 201, 492, 516
MslI CAYNNNNRTG 2 cut(s) 185, 459
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 23
NdeII GATC 2 cut(s) 444, 471
NlaIII CATG 3 cut(s) 190, 310, 420
NlaIV GGNNCC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 295
PsuI RGATCY 1 cut(s) 444
RseI CAYNNNNRTG 2 cut(s) 185, 459
SaqAI TTAA 5 cut(s) 53, 83, 201, 492, 516
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 2 cut(s) 444, 471
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 2 cut(s) 81, 161
SfaNI GCATC 4 cut(s) 14, 375, 525, 547
SinI GGWCC 1 cut(s) 295
SmiMI CAYNNNNRTG 2 cut(s) 185, 459
Sse9I AATT 4 cut(s) 43, 194, 290, 513
SsiI CCGC 2 cut(s) 69, 504
SspMI CTAG 1 cut(s) 631
StyD4I CCNGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 183, 372
TasI AATT 4 cut(s) 43, 194, 290, 513
Tru1I TTAA 5 cut(s) 53, 83, 201, 492, 516
Tru9I TTAA 5 cut(s) 53, 83, 201, 492, 516
TscAI CASTG 1 cut(s) 399
TseI GCWGC 1 cut(s) 16
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 295
XspI CTAG 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.