Rorug02G0302500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001297
Physical Location & Seq
Forward (+)
33774922 .. 33776212
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0302500.1

Sequence Viewer

Length: 1143 bp
ATGGAGGAGAGCAGAGGCAATCAACTTCCTGGCCAGAGGTTCTGCCCCATGGACGATGAACTAGTTCTCTTTTACCTCAAGCCGATGTTGAGCGGACAGAACGTGCCCGGCAGAAACCGCGTGGTGTTCGACTGCGACCTCTACGGTCAGCAAGAACCTTGGGAGATATGGGAGACCTTCAAGGCCAGAAGACCACACGACTTGAGGCTCAATAAGGACATTTACTTCTTCACCCAACACAAGAAGATGAGTTCCACAGACAAGCGCATACGCCGGAATGTTGGAAGTGGCACCTGGAAGGGGGACGACTCCGGCAAGCCAGTACGATATGTTGATTCTGGTTGTGTTGTTGGCTTAAAGAAAAGATATACTTACAAGAATGAAGACTCGGTGCACAACGGCTGTTGGATCTTGTACGAGTTCTACCTTGATCGATCACTCAGAGACAAGAAACAAAAGGTGAAAGACTGTGTTCTTTGTCGACTACGAAAGAATGATGAACCCAAAACCAAGATTGAAAAGAAGAGAAAGCAACGTGAAGAGGAACAGTTTCTTGAAAACAATTATGCCTGTGATGATGGAGAAAACTCGAATAGGGAGCAAGAAGTGTTGCTTGAGCCGCAAGCGAAGCGACAACGAACCGTGCCATCCATTGATAATGCACCACCAACAATGCCATCAGAAGATGATGCTGCATTTGCAGCTGAACTAGAAGAGTCATTGGAATGCTCTGAAGATGATAATGCACCCTCATCAGAAGCTGAAGCAGTTGGCCTTCAAGGTGAGGAGAATGGTGGACTCCAAAAATTAGCATCCGAGGGGCAATCATCAGGGCCTTCATTTGTAGACTATTATGGAATATTTAATCCGCTGCTGGAGGAAGATTTTCTCTGGGAGGAAATGGTAGAAGAAATGGGTACGGTAGAGAAGGAAGAACCAGTTCTTAATTGTGTAAGTAGTAATATAGATGTGGCTGAAGATAACGCGGATGCTGCGTACTGGCTTGAGTCTTTGGTAGAGGTCCCAACTGATGAGCAACAGAAGACAGCTGATGAAGATTGTTCAGATTGGTTGGAGTCAATGATCAATTTTAGTCCTGAGGAGAACAACTTCCTTTGGAGTGAAATGCAATGGTGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

380

Amino Acids

43.87

Weight (kDa)

4.53

Isoelectric Point (pI)

65.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 142 7.5e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AccBSI CCGCTC 1 cut(s) 93
AccI GTMKAC 2 cut(s) 481, 846
AccII CGCG 2 cut(s) 120, 986
AciI CCGC 5 cut(s) 93, 118, 620, 869, 986
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 31
AcuI CTGAAG 3 cut(s) 753, 783, 996
AfaI GTAC 4 cut(s) 324, 416, 919, 998
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 4 cut(s) 181, 518, 557, 779
AhlI ACTAGT 1 cut(s) 61
AjnI CCWGG 2 cut(s) 28, 293
AluBI AGCT 3 cut(s) 704, 761, 1049
AluI AGCT 3 cut(s) 704, 761, 1049
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 2 cut(s) 167, 438
Alw44I GTGCAC 1 cut(s) 392
AlwI GGATC 1 cut(s) 416
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 4 cut(s) 31, 183, 772, 833
ApaLI GTGCAC 1 cut(s) 392
ApeKI GCWGC 4 cut(s) 692, 701, 871, 992
Asp700I GAANNNNTTC 5 cut(s) 63, 549, 885, 939, 1109
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 2 cut(s) 833, 1021
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 223, 472, 794
AvaII GGWCC 1 cut(s) 1021
AxyI CCTNAGG 1 cut(s) 1098
BaeGI GKGCMC 2 cut(s) 108, 396
BalI TGGCCA 1 cut(s) 33
BanI GGYRCC 1 cut(s) 290
BbsI GAAGAC 3 cut(s) 196, 390, 1049
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 4 cut(s) 679, 713, 858, 979
BccI CCATC 3 cut(s) 572, 655, 685
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 2 cut(s) 30, 295
BclI TGATCA 1 cut(s) 1083
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 167, 438
BcuI ACTAGT 1 cut(s) 61
BfaI CTAG 2 cut(s) 62, 710
BisI GCNGC 5 cut(s) 620, 693, 702, 872, 993
BlsI GCNGC 5 cut(s) 621, 694, 703, 873, 994
Bme1390I CCNGG 3 cut(s) 30, 108, 295
Bme18I GGWCC 1 cut(s) 1021
BmgT120I GGNCC 2 cut(s) 833, 1021
BmiI GGNNCC 2 cut(s) 292, 1023
BmrFI CCNGG 3 cut(s) 30, 108, 295
BmsI GCATC 3 cut(s) 679, 821, 979
BpiI GAAGAC 3 cut(s) 196, 390, 1049
BpmI CTGGAG 1 cut(s) 896
BpuEI CTTGAG 4 cut(s) 62, 223, 635, 1025
BpuMI CCSGG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 433
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 48, 158, 816
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse1I ACTGG 3 cut(s) 320, 938, 1004
Bse21I CCTNAGG 1 cut(s) 1098
Bse3DI GCAATG 1 cut(s) 1136
BseBI CCWGG 2 cut(s) 30, 295
BseCI ATCGAT 1 cut(s) 433
BseDI CCNNGG 3 cut(s) 48, 158, 816
BseGI GGATG 3 cut(s) 647, 812, 994
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMI GCAATG 1 cut(s) 1136
BseMII CTCAG 2 cut(s) 454, 1089
BseNI ACTGG 3 cut(s) 320, 938, 1004
BseRI GAGGAG 3 cut(s) 20, 800, 1115
BseSI GKGCMC 2 cut(s) 108, 396
BseXI GCAGC 4 cut(s) 679, 713, 858, 979
Bsh1236I CGCG 2 cut(s) 120, 986
BshFI GGCC 4 cut(s) 33, 185, 774, 835
BshNI GGYRCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 3 cut(s) 108, 274, 312
BslFI GGGAC 2 cut(s) 317, 1007
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 2 cut(s) 167, 438
BsmFI GGGAC 2 cut(s) 317, 1007
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 4 cut(s) 33, 185, 774, 835
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 108, 396
Bsp143I GATC 4 cut(s) 408, 430, 434, 1083
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 5 cut(s) 93, 118, 620, 869, 986
BspANI GGCC 4 cut(s) 33, 185, 774, 835
BspCNI CTCAG 2 cut(s) 453, 1090
BspDI ATCGAT 1 cut(s) 433
BspFNI CGCG 2 cut(s) 120, 986
BspLI GGNNCC 2 cut(s) 292, 1023
BspPI GGATC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 1136
BsrI ACTGG 3 cut(s) 320, 938, 1004
BssECI CCNNGG 3 cut(s) 48, 158, 816
BssMI GATC 4 cut(s) 408, 430, 434, 1083
BssT1I CCWWGG 2 cut(s) 48, 158
Bst2UI CCWGG 2 cut(s) 30, 295
Bst4CI ACNGT 5 cut(s) 146, 470, 549, 643, 922
Bst6I CTCTTC 3 cut(s) 518, 534, 708
BstC8I GCNNGC 2 cut(s) 317, 624
BstDEI CTNAG 2 cut(s) 440, 1098
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 3 cut(s) 647, 812, 994
BstFNI CGCG 2 cut(s) 120, 986
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 4 cut(s) 411, 433, 437, 1086
BstMAI GTCTC 2 cut(s) 167, 438
BstMBI GATC 4 cut(s) 408, 430, 434, 1083
BstMWI GCNNNNNNNGC 6 cut(s) 117, 619, 628, 698, 701, 992
BstNI CCWGG 2 cut(s) 30, 295
BstSCI CCNGG 3 cut(s) 28, 106, 293
BstSLI GKGCMC 2 cut(s) 108, 396
BstUI CGCG 2 cut(s) 120, 986
BstV1I GCAGC 4 cut(s) 679, 713, 858, 979
BstV2I GAAGAC 3 cut(s) 196, 390, 1049
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
Bsu15I ATCGAT 1 cut(s) 433
Bsu36I CCTNAGG 1 cut(s) 1098
BsuRI GGCC 4 cut(s) 33, 185, 774, 835
BsuTUI ATCGAT 1 cut(s) 433
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 3 cut(s) 647, 812, 994
Cac8I GCNNGC 2 cut(s) 317, 624
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 2 cut(s) 833, 1021
ClaI ATCGAT 1 cut(s) 433
Csp6I GTAC 4 cut(s) 323, 415, 918, 997
CspCI CAANNNNNGTGG 2 cut(s) 183, 218
CviAII CATG 1 cut(s) 49
CviQI GTAC 4 cut(s) 323, 415, 918, 997
DdeI CTNAG 2 cut(s) 440, 1098
DpnI GATC 4 cut(s) 410, 432, 436, 1085
DpnII GATC 4 cut(s) 408, 430, 434, 1083
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 3 cut(s) 518, 534, 708
EarI CTCTTC 3 cut(s) 518, 534, 708
Eco130I CCWWGG 2 cut(s) 48, 158
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 1021
Eco57I CTGAAG 3 cut(s) 753, 783, 996
Eco81I CCTNAGG 1 cut(s) 1098
EcoO109I RGGNCCY 2 cut(s) 833, 1021
EcoRII CCWGG 2 cut(s) 28, 293
EcoT14I CCWWGG 2 cut(s) 48, 158
ErhI CCWWGG 2 cut(s) 48, 158
FaeI CATG 1 cut(s) 52
FaiI YATR 8 cut(s) 50, 169, 269, 330, 369, 567, 855, 965
FalI AAGNNNNNCTT 4 cut(s) 355, 387, 597, 629
FaqI GGGAC 2 cut(s) 317, 1007
FatI CATG 1 cut(s) 48
FbaI TGATCA 1 cut(s) 1083
FblI GTMKAC 2 cut(s) 481, 846
Fnu4HI GCNGC 5 cut(s) 620, 693, 702, 872, 993
FokI GGATG 3 cut(s) 634, 799, 1001
Fsp4HI GCNGC 5 cut(s) 620, 693, 702, 872, 993
FspBI CTAG 2 cut(s) 62, 710
GlaI GCGC 1 cut(s) 266
GluI GCNGC 5 cut(s) 620, 693, 702, 872, 993
GsuI CTGGAG 1 cut(s) 896
HaeIII GGCC 4 cut(s) 33, 185, 774, 835
HapII CCGG 3 cut(s) 108, 274, 312
HhaI GCGC 1 cut(s) 267
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HincII GTYRAC 1 cut(s) 482
HindII GTYRAC 1 cut(s) 482
HinfI GANTC 7 cut(s) 308, 335, 386, 716, 798, 1007, 1076
HpaII CCGG 3 cut(s) 108, 274, 312
HphI GGTGA 3 cut(s) 223, 472, 794
Hpy166II GTNNAC 4 cut(s) 394, 482, 797, 847
Hpy188I TCNGA 6 cut(s) 443, 682, 733, 757, 817, 1066
Hpy188III TCNNGA 2 cut(s) 554, 1097
Hpy8I GTNNAC 4 cut(s) 394, 482, 797, 847
HpyAV CCTTC 5 cut(s) 187, 292, 785, 846, 922
HpyCH4III ACNGT 5 cut(s) 146, 470, 549, 643, 922
HpyCH4IV ACGT 2 cut(s) 102, 535
HpyCH4V TGCA 6 cut(s) 394, 662, 695, 701, 746, 1129
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 619, 628, 698, 701, 992
HpyF3I CTNAG 2 cut(s) 440, 1098
HpySE526I ACGT 2 cut(s) 102, 535
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 1083
Kzo9I GATC 4 cut(s) 408, 430, 434, 1083
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 4 cut(s) 679, 713, 858, 979
LweI GCATC 3 cut(s) 679, 821, 979
MaeI CTAG 2 cut(s) 62, 710
MaeII ACGT 2 cut(s) 102, 535
MalI GATC 4 cut(s) 410, 432, 436, 1085
MbiI CCGCTC 1 cut(s) 93
MboI GATC 4 cut(s) 408, 430, 434, 1083
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 108, 396
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 4 cut(s) 562, 806, 946, 1087
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 6 cut(s) 302, 380, 725, 792, 1016, 1085
MmeI TCCRAC 3 cut(s) 262, 386, 1053
Mox20I TGGCCA 1 cut(s) 33
MroXI GAANNNNTTC 5 cut(s) 63, 549, 885, 939, 1109
MscI TGGCCA 1 cut(s) 33
MseI TTAA 3 cut(s) 356, 864, 945
MslI CAYNNNNRTG 1 cut(s) 724
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 3 cut(s) 704, 871, 1049
MspI CCGG 3 cut(s) 108, 274, 312
MspR9I CCNGG 3 cut(s) 30, 108, 295
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 2 cut(s) 30, 295
MvnI CGCG 2 cut(s) 120, 986
MwoI GCNNNNNNNGC 6 cut(s) 117, 619, 628, 698, 701, 992
NciI CCSGG 1 cut(s) 108
NcoI CCATGG 1 cut(s) 48
NdeII GATC 4 cut(s) 408, 430, 434, 1083
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 2 cut(s) 292, 1023
PctI GAATGC 1 cut(s) 731
PdmI GAANNNNTTC 5 cut(s) 63, 549, 885, 939, 1109
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 5 cut(s) 621, 694, 703, 873, 994
PleI GAGTC 6 cut(s) 302, 380, 724, 792, 1015, 1084
PpsI GAGTC 6 cut(s) 302, 380, 724, 792, 1015, 1084
PpuMI RGGWCCY 1 cut(s) 1021
Psp5II RGGWCCY 1 cut(s) 1021
Psp6I CCWGG 2 cut(s) 28, 293
PspGI CCWGG 2 cut(s) 28, 293
PspN4I GGNNCC 2 cut(s) 292, 1023
PspPI GGNCC 2 cut(s) 833, 1021
PspPPI RGGWCCY 1 cut(s) 1021
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 408
PvuII CAGCTG 2 cut(s) 704, 1049
RsaI GTAC 4 cut(s) 324, 416, 919, 998
RsaNI GTAC 4 cut(s) 323, 415, 918, 997
RseI CAYNNNNRTG 1 cut(s) 724
SalI GTCGAC 1 cut(s) 480
SaqAI TTAA 3 cut(s) 356, 864, 945
SatI GCNGC 5 cut(s) 620, 693, 702, 872, 993
Sau3AI GATC 4 cut(s) 408, 430, 434, 1083
Sau96I GGNCC 2 cut(s) 833, 1021
SchI GAGTC 6 cut(s) 302, 380, 725, 792, 1016, 1085
ScrFI CCNGG 3 cut(s) 30, 108, 295
SduI GDGCHC 2 cut(s) 108, 396
SfaNI GCATC 3 cut(s) 679, 821, 979
SinI GGWCC 1 cut(s) 1021
SmiMI CAYNNNNRTG 1 cut(s) 724
SmlI CTYRAG 4 cut(s) 77, 202, 614, 1004
SmoI CTYRAG 4 cut(s) 77, 202, 614, 1004
SpeI ACTAGT 1 cut(s) 61
Sse9I AATT 4 cut(s) 562, 806, 946, 1087
SsiI CCGC 5 cut(s) 93, 118, 620, 869, 986
SspI AATATT 1 cut(s) 861
SspMI CTAG 2 cut(s) 62, 710
StyD4I CCNGG 3 cut(s) 28, 106, 293
StyI CCWWGG 2 cut(s) 48, 158
TaaI ACNGT 5 cut(s) 146, 470, 549, 643, 922
TaiI ACGT 2 cut(s) 105, 538
TaqI TCGA 4 cut(s) 129, 433, 481, 590
TasI AATT 4 cut(s) 562, 806, 946, 1087
TauI GCSGC 1 cut(s) 622
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 3 cut(s) 356, 864, 945
Tru9I TTAA 3 cut(s) 356, 864, 945
TseI GCWGC 4 cut(s) 692, 701, 871, 992
TspDTI ATGAA 5 cut(s) 72, 396, 513, 828, 1068
VneI GTGCAC 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 1021
XmiI GTMKAC 2 cut(s) 481, 846
XmnI GAANNNNTTC 5 cut(s) 63, 549, 885, 939, 1109
XspI CTAG 2 cut(s) 62, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.