Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001297

Physical Location & Seq

Genomic Coordinates Reverse (-)

3553792 .. 3556036

Gene Structure 2245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G072700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCATCAATATCGCAGCTACCAGCAGGCTTTGAGAACTCCAATTCACTCTTGAGCGTCCTGGAAATCACCAAACAGCCCCTCACTTCAGTCCCAGAATGTTATGTTCGTACCGTGGAACGAGAACCAGCCTCGTCTCTCTTTGATGGTCATAAGGGCACCTTCCCATCCATCCCCTCCATTGACATGACCAAATTAGTTAAGGCAGAAGCCTCAGACTTTGCAGATCAACTGGAAAAACTGCACTCAACTTGCAAAGACTGGGGCATCTTTGAGTTGGTGAACCATGGAGTTAGCCCTACGCTGTTGGAGAAGCTGAAGCAGGAGATTGAAGAATTCTTTAAGCTTCCCTTGGAAGAGAAAATGAAATATAAGATCAGGCCAGGTGAAGTTGAAGGCTATGGATCCGTAGTCAACACCAAAGACCAAAAGCTTGACTGGGGTGACAGGGTCTACATGATAACCAACCCTATTCATCGAAGAAAGCCTTATCTCTTCCCAGAGCTCCCTTCATCCCTCAGGAATACCTTGGATTCATACTTGCTGCAAGTGGATCAGCTGGCCATGAGACTTCTTGGGTTTATGGGGAAGGCTCTGAAGATAGAGATGAGAGAGATGGAGGAGATGTTTGACGATGGGATGAGGTCAGTGAGGATGACATACTATCCTCCATGCCCACAACCAGAGCAGGTGATAGGGCTCTCGCCTCACTCAGATGCAACTGGGATCACTATCCTCAACCAGCTTAATGGAGTTGATGGTCTCCAAATCAAAAAAGATGGGGTTTGGATGCCTGTCAACTTCCAAAAAGATGCCTTTGTTGTGAATGTAGGGGACAGCTTTGAGATTCTGAGCAATGGAGTATACCACAGCATTGAGCACAGGGCAATGGTGAATTCAGAGAAGGAAAGGTTGTCAGTTGCAATGTTCATAAATCCTAAGTTTGAGGCAGAGATTGGGCCTGCGAGAAGCTTGATAACCCCACAAAACCCACCACTCTTCAAAACGGTTGGGATGGAGAAGTACGTCAATGATTTCTTCTCCCGCTATAAGCTTGATGGAAAGTCATACTTGGATCAAATGAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

364

Amino Acids

41.26

Weight (kDa)

5.64

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001297)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27770 FvH4_6g28170
malus_domestica	MD05G1292600.v1.1 MD05G1292700.v1.1 MD10G1268500.v1.1
prunus_persica	Prupe.4G072700_v2.0.a1
pyrus_communis	pycom05g26880 pycom05g26910 pycom10g22500
rosa_chinensis	RchiOBHm_Chr2g0132141 RchiOBHm_Chr2g0132151 RchiOBHm_Chr2g0132181 RchiOBHm_Chr5g0012711 RchiOBHm_Chr5g0026041
rosa_laevigata	RLG00000019231 RLG00000019232 RLG00000019237 RLG00000031933 RLG00000031934 RLG00000031936 RLG00000031949 RLG00000031950
rosa_multiflora	Rmu_sc0004583.1_g000011 Rmu_sc0007569.1_g000003 Rmu_sc0009538.1_g000009 Rmu_sc0009538.1_g000015
rosa_roxburghii	Rroxscaffold_1G00063920 Rroxscaffold_2G00112310 Rroxscaffold_2G00112360 Rroxscaffold_2G00112370
rosa_rugosa	Rorug02G0302500 Rorug02G0302600 Rorug05G0003800 Rorug05G0003900
rosa_samantha	Rh2AG355600 Rh2AG355700 Rh2AG356000 Rh2BG361700 Rh2BG362100 Rh2CG339200 Rh2DG378600 Rh2DG378800 Rh2DG379200 Rh5AG097600 Rh5AG182600 Rh5BG094200 Rh5CG106300 Rh5CG199100 Rh5DG093000 Rh5DG181600
rosa_wichuraiana	Rw2G028870 Rw2G028880 Rw2G028910 Rw5G008550 Rw5G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	679
Acc36I	ACCTGC	1 cut(s)	679
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	2 cut(s)	453, 864
AciI	CCGC	1 cut(s)	1045
AclWI	GGATC	5 cut(s)	399, 412, 561, 734, 1083
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	2 cut(s)	335, 895
AcuI	CTGAAG	3 cut(s)	72, 338, 617
AfaI	GTAC	2 cut(s)	112, 1025
AgsI	TTSAA	3 cut(s)	332, 395, 1003
AjnI	CCWGG	2 cut(s)	60, 382
Alw21I	GWGCWC	2 cut(s)	507, 882
Alw26I	GTCTC	3 cut(s)	141, 562, 767
AlwI	GGATC	5 cut(s)	399, 412, 561, 734, 1083
AoxI	GGCC	3 cut(s)	380, 561, 959
ApeKI	GCWGC	2 cut(s)	16, 544
ApoI	RAATTY	2 cut(s)	335, 895
AspS9I	GGNCC	1 cut(s)	959
AsuHPI	GGTGA	6 cut(s)	61, 292, 398, 455, 703, 904
AxyI	CCTNAGG	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	563
BamHI	GGATCC	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	2 cut(s)	507, 702
Bbv12I	GWGCWC	2 cut(s)	507, 882
BbvI	GCAGC	2 cut(s)	28, 531
BccI	CCATC	9 cut(s)	140, 175, 179, 610, 629, 752, 773, 1009, 1052
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	62, 384
BcoDI	GTCTC	3 cut(s)	141, 562, 767
BfuAI	ACCTGC	1 cut(s)	679
BisI	GCNGC	2 cut(s)	17, 545
BlsI	GCNGC	2 cut(s)	18, 546
Bme1390I	CCNGG	2 cut(s)	62, 384
BmgT120I	GGNCC	1 cut(s)	959
BmiI	GGNNCC	2 cut(s)	160, 406
BmrFI	CCNGG	2 cut(s)	62, 384
BmrI	ACTGGG	3 cut(s)	271, 448, 732
BmsI	GCATC	5 cut(s)	14, 276, 706, 780, 802
BmuI	ACTGGG	3 cut(s)	271, 448, 732
BpuEI	CTTGAG	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	731
BsaI	GGTCTC	1 cut(s)	767
BsaJI	CCNNGG	4 cut(s)	114, 286, 351, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bse1I	ACTGG	4 cut(s)	237, 266, 443, 727
Bse21I	CCTNAGG	1 cut(s)	518
Bse3DI	GCAATG	3 cut(s)	862, 894, 930
Bse8I	GATNNNNATC	1 cut(s)	731
BseBI	CCWGG	2 cut(s)	62, 384
BseDI	CCNNGG	4 cut(s)	114, 286, 351, 528
BseGI	GGATG	7 cut(s)	167, 171, 512, 645, 660, 795, 1020
BseJI	GATNNNNATC	1 cut(s)	731
BseMI	GCAATG	3 cut(s)	862, 894, 930
BseMII	CTCAG	4 cut(s)	228, 532, 726, 842
BseNI	ACTGG	4 cut(s)	237, 266, 443, 727
BseRI	GAGGAG	1 cut(s)	635
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	28, 531
BsgI	GTGCAG	1 cut(s)	227
BshFI	GGCC	3 cut(s)	382, 563, 961
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	2 cut(s)	507, 882
BslFI	GGGAC	2 cut(s)	77, 848
BsmAI	GTCTC	3 cut(s)	141, 562, 767
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	2 cut(s)	77, 848
BsnI	GGCC	3 cut(s)	382, 563, 961
Bso31I	GGTCTC	1 cut(s)	767
Bsp1286I	GDGCHC	4 cut(s)	161, 507, 702, 882
Bsp143I	GATC	6 cut(s)	226, 375, 404, 553, 726, 1075
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	1 cut(s)	1045
BspANI	GGCC	3 cut(s)	382, 563, 961
BspCNI	CTCAG	4 cut(s)	227, 531, 725, 843
BspLI	GGNNCC	2 cut(s)	160, 406
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	5 cut(s)	399, 412, 561, 734, 1083
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	767
BsrDI	GCAATG	3 cut(s)	862, 894, 930
BsrI	ACTGG	4 cut(s)	237, 266, 443, 727
BssECI	CCNNGG	4 cut(s)	114, 286, 351, 528
BssMI	GATC	6 cut(s)	226, 375, 404, 553, 726, 1075
BssNAI	GTATAC	1 cut(s)	865
BssT1I	CCWWGG	3 cut(s)	286, 351, 528
Bst1107I	GTATAC	1 cut(s)	865
Bst2UI	CCWGG	2 cut(s)	62, 384
Bst4CI	ACNGT	2 cut(s)	115, 1009
Bst6I	CTCTTC	3 cut(s)	351, 500, 1004
BstC8I	GCNNGC	3 cut(s)	28, 561, 963
BstDEI	CTNAG	5 cut(s)	214, 518, 712, 851, 939
BstDSI	CCRYGG	2 cut(s)	114, 286
BstF5I	GGATG	7 cut(s)	167, 171, 512, 645, 660, 795, 1020
BstKTI	GATC	6 cut(s)	229, 378, 407, 556, 729, 1078
BstMAI	GTCTC	3 cut(s)	141, 562, 767
BstMBI	GATC	6 cut(s)	226, 375, 404, 553, 726, 1075
BstNI	CCWGG	2 cut(s)	62, 384
BstSCI	CCNGG	2 cut(s)	60, 382
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	28, 531
BstX2I	RGATCY	1 cut(s)	404
BstXI	CCANNNNNNTGG	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	404
BstZ17I	GTATAC	1 cut(s)	865
Bsu36I	CCTNAGG	1 cut(s)	518
BsuRI	GGCC	3 cut(s)	382, 563, 961
BtgI	CCRYGG	2 cut(s)	114, 286
BtsCI	GGATG	7 cut(s)	167, 171, 512, 645, 660, 795, 1020
BtsIMutI	CAGTG	1 cut(s)	654
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	3 cut(s)	28, 561, 963
Cfr13I	GGNCC	1 cut(s)	959
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	111, 1024
CviAII	CATG	5 cut(s)	187, 287, 457, 565, 672
CviQI	GTAC	2 cut(s)	111, 1024
DdeI	CTNAG	5 cut(s)	214, 518, 712, 851, 939
DpnI	GATC	6 cut(s)	228, 377, 406, 555, 728, 1077
DpnII	GATC	6 cut(s)	226, 375, 404, 553, 726, 1075
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	3 cut(s)	351, 500, 1004
EarI	CTCTTC	3 cut(s)	351, 500, 1004
Ecl136II	GAGCTC	1 cut(s)	505
Eco130I	CCWWGG	3 cut(s)	286, 351, 528
Eco24I	GRGCYC	2 cut(s)	507, 702
Eco31I	GGTCTC	1 cut(s)	767
Eco53kI	GAGCTC	1 cut(s)	505
Eco57I	CTGAAG	3 cut(s)	72, 338, 617
Eco81I	CCTNAGG	1 cut(s)	518
EcoICRI	GAGCTC	1 cut(s)	505
EcoRI	GAATTC	2 cut(s)	335, 895
EcoRII	CCWGG	2 cut(s)	60, 382
EcoT14I	CCWWGG	3 cut(s)	286, 351, 528
EcoT38I	GRGCYC	2 cut(s)	507, 702
ErhI	CCWWGG	3 cut(s)	286, 351, 528
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	5 cut(s)	190, 290, 460, 568, 675
FalI	AAGNNNNNCTT	8 cut(s)	146, 178, 335, 367, 472, 504, 1055, 1087
FaqI	GGGAC	2 cut(s)	77, 848
FatI	CATG	5 cut(s)	186, 286, 456, 564, 671
FauI	CCCGC	1 cut(s)	1052
FblI	GTMKAC	2 cut(s)	453, 864
Fnu4HI	GCNGC	2 cut(s)	17, 545
FokI	GGATG	7 cut(s)	154, 158, 499, 652, 667, 802, 1027
FriOI	GRGCYC	2 cut(s)	507, 702
Fsp4HI	GCNGC	2 cut(s)	17, 545
GluI	GCNGC	2 cut(s)	17, 545
HaeIII	GGCC	3 cut(s)	382, 563, 961
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	5 cut(s)	190, 290, 460, 568, 675
HincII	GTYRAC	2 cut(s)	415, 799
HindII	GTYRAC	2 cut(s)	415, 799
HindIII	AAGCTT	4 cut(s)	344, 431, 970, 1052
HinfI	GANTC	2 cut(s)	533, 847
HphI	GGTGA	6 cut(s)	61, 292, 398, 455, 703, 904
Hpy166II	GTNNAC	5 cut(s)	283, 415, 454, 799, 865
Hpy188I	TCNGA	5 cut(s)	217, 597, 715, 852, 901
Hpy188III	TCNNGA	2 cut(s)	52, 520
Hpy8I	GTNNAC	5 cut(s)	283, 415, 454, 799, 865
HpyAV	CCTTC	5 cut(s)	172, 389, 519, 583, 898
HpyCH4III	ACNGT	2 cut(s)	115, 1009
HpyCH4IV	ACGT	1 cut(s)	1026
HpyCH4V	TGCA	6 cut(s)	224, 244, 255, 547, 719, 923
HpyF3I	CTNAG	5 cut(s)	214, 518, 712, 851, 939
HpySE526I	ACGT	1 cut(s)	1026
Hsp92II	CATG	5 cut(s)	190, 290, 460, 568, 675
Kzo9I	GATC	6 cut(s)	226, 375, 404, 553, 726, 1075
LmnI	GCTCC	1 cut(s)	510
Lsp1109I	GCAGC	2 cut(s)	28, 531
LweI	GCATC	5 cut(s)	14, 276, 706, 780, 802
MaeII	ACGT	1 cut(s)	1026
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	6 cut(s)	228, 377, 406, 555, 728, 1077
MboI	GATC	6 cut(s)	226, 375, 404, 553, 726, 1075
MboII	GAAGA	7 cut(s)	344, 368, 487, 492, 610, 991, 1030
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	4 cut(s)	161, 507, 702, 882
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	4 cut(s)	43, 194, 335, 895
MluNI	TGGCCA	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	288
Mox20I	TGGCCA	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	3 cut(s)	201, 342, 747
MslI	CAYNNNNRTG	2 cut(s)	185, 714
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	559
MspR9I	CCNGG	2 cut(s)	62, 384
MvaI	CCWGG	2 cut(s)	62, 384
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	6 cut(s)	226, 375, 404, 553, 726, 1075
NlaIII	CATG	5 cut(s)	190, 290, 460, 568, 675
NlaIV	GGNNCC	2 cut(s)	160, 406
NmuCI	GTSAC	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	679
PfeI	GAWTC	2 cut(s)	533, 847
PflFI	GACNNNGTC	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	18, 546
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	60, 382
PspGI	CCWGG	2 cut(s)	60, 382
PspN4I	GGNNCC	2 cut(s)	160, 406
PspPI	GGNCC	1 cut(s)	959
PsuI	RGATCY	1 cut(s)	404
PsyI	GACNNNGTC	1 cut(s)	449
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	2 cut(s)	112, 1025
RsaNI	GTAC	2 cut(s)	111, 1024
RseI	CAYNNNNRTG	2 cut(s)	185, 714
SacI	GAGCTC	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	201, 342, 747
SatI	GCNGC	2 cut(s)	17, 545
Sau3AI	GATC	6 cut(s)	226, 375, 404, 553, 726, 1075
Sau96I	GGNCC	1 cut(s)	959
ScrFI	CCNGG	2 cut(s)	62, 384
SduI	GDGCHC	4 cut(s)	161, 507, 702, 882
SfaNI	GCATC	5 cut(s)	14, 276, 706, 780, 802
SmiMI	CAYNNNNRTG	2 cut(s)	185, 714
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	4 cut(s)	43, 194, 335, 895
SsiI	CCGC	1 cut(s)	1045
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	60, 382
StyI	CCWWGG	3 cut(s)	286, 351, 528
TaaI	ACNGT	2 cut(s)	115, 1009
TaiI	ACGT	1 cut(s)	1029
TaqI	TCGA	1 cut(s)	478
TasI	AATT	4 cut(s)	43, 194, 335, 895
TfiI	GAWTC	2 cut(s)	533, 847
Tru1I	TTAA	3 cut(s)	201, 342, 747
Tru9I	TTAA	3 cut(s)	201, 342, 747
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	2 cut(s)	16, 544
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	5 cut(s)	380, 464, 501, 525, 919
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	654
Tth111I	GACNNNGTC	1 cut(s)	449
XapI	RAATTY	2 cut(s)	335, 895
XmiI	GTMKAC	2 cut(s)	453, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.