RLG00000031936

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001297
Physical Location & Seq
Forward (+)
9668349 .. 9669218
870 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031936

Sequence Viewer

Length: 387 bp
ATGAAGTATCAGATAAGGCCTGGTGACATTGAAGGCTATGGATCCCTAGCCCAAAATAAAGAGCAAAAACGTCTGGGGAGTACCTTCGAGTCATACTACTTGGAACTGAAGCAACTAGCCATGGAACTTCTTGGGTTTCTGGGGAAGGCTGTGAAGATAGACCTAAAAGAGATTGAGGAGATGTTTGAAGATGGGATGCAGTCAGTGAGGATGAATTACTATCCTGCGTGCCCACAACCAGGCTGGTCATCGGCCTCACACCTCACTCGGACGCTTCCGGGATCACCATCCTCCACGAGCTTAACGGTGTGGGTGGTCTGCAGATTAAGAAAGATGGGGTTTGGGTTCCTGTCAACTTCCGTGAAGATGGCTTTGTGGTTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

129

Amino Acids

14.51

Weight (kDa)

8.91

Isoelectric Point (pI)

64.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 36, 49, 289
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 2 cut(s) 32, 188
AjnI CCWGG 2 cut(s) 19, 238
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
AlwI GGATC 3 cut(s) 36, 49, 289
AoxI GGCC 2 cut(s) 17, 252
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 35, 276
BaeGI GKGCMC 1 cut(s) 233
BamHI GGATCC 1 cut(s) 41
BauI CACGAG 1 cut(s) 295
BccI CCATC 4 cut(s) 185, 295, 328, 361
BciT130I CCWGG 2 cut(s) 21, 240
BcnI CCSGG 1 cut(s) 279
BfaI CTAG 2 cut(s) 47, 116
BfmI CTRYAG 1 cut(s) 319
Bme1390I CCNGG 3 cut(s) 21, 240, 279
BmiI GGNNCC 2 cut(s) 43, 347
BmrFI CCNGG 3 cut(s) 21, 240, 279
BmsI GCATC 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 286
BseBI CCWGG 2 cut(s) 21, 240
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 3 cut(s) 201, 216, 287
BseJI GATNNNNATC 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 233
BshFI GGCC 2 cut(s) 19, 254
BsiSI CCGG 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 239
BsnI GGCC 2 cut(s) 19, 254
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 41, 281
Bsp19I CCATGG 1 cut(s) 120
BspANI GGCC 2 cut(s) 19, 254
BspLI GGNNCC 2 cut(s) 43, 347
BspMAI CTGCAG 1 cut(s) 323
BspPI GGATC 3 cut(s) 36, 49, 289
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 41, 281
BssSI CACGAG 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 295
Bst2UI CCWGG 2 cut(s) 21, 240
Bst4CI ACNGT 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 3 cut(s) 201, 216, 287
BstKTI GATC 2 cut(s) 44, 284
BstMBI GATC 2 cut(s) 41, 281
BstNI CCWGG 2 cut(s) 21, 240
BstSCI CCNGG 3 cut(s) 19, 238, 277
BstSFI CTRYAG 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BsuRI GGCC 2 cut(s) 19, 254
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 3 cut(s) 201, 216, 287
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 229
CseI GACGC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 81
CviAII CATG 1 cut(s) 121
CviJI RGCY 9 cut(s) 19, 36, 50, 119, 149, 243, 254, 300, 371
CviKI_1 RGCY 9 cut(s) 19, 36, 50, 119, 149, 243, 254, 300, 371
CviQI GTAC 1 cut(s) 81
DpnI GATC 2 cut(s) 43, 283
DpnII GATC 2 cut(s) 41, 281
Eco130I CCWWGG 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 19, 238
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 124
FaiI YATR 3 cut(s) 39, 94, 122
FatI CATG 1 cut(s) 120
FokI GGATG 3 cut(s) 208, 223, 274
FspBI CTAG 2 cut(s) 47, 116
HaeIII GGCC 2 cut(s) 19, 254
HapII CCGG 1 cut(s) 278
HgaI GACGC 1 cut(s) 280
Hin1II CATG 1 cut(s) 124
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 278
HphI GGTGA 2 cut(s) 35, 276
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 2 cut(s) 12, 270
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 3 cut(s) 26, 94, 139
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 199, 321
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 2 cut(s) 41, 281
LweI GCATC 1 cut(s) 186
MaeI CTAG 2 cut(s) 47, 116
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 23
MalI GATC 2 cut(s) 43, 283
MboI GATC 2 cut(s) 41, 281
MboII GAAGA 3 cut(s) 166, 200, 376
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 214
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 5 cut(s) 169, 201, 265, 272, 301
MseI TTAA 3 cut(s) 302, 326, 380
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 3 cut(s) 21, 240, 279
MvaI CCWGG 2 cut(s) 21, 240
NciI CCSGG 1 cut(s) 279
NcoI CCATGG 1 cut(s) 120
NdeII GATC 2 cut(s) 41, 281
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 2 cut(s) 43, 347
NmuCI GTSAC 1 cut(s) 23
PceI AGGCCT 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 277
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 19, 238
PspGI CCWGG 2 cut(s) 19, 238
PspN4I GGNNCC 2 cut(s) 43, 347
PstI CTGCAG 1 cut(s) 323
PsuI RGATCY 1 cut(s) 41
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SaqAI TTAA 3 cut(s) 302, 326, 380
Sau3AI GATC 2 cut(s) 41, 281
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 21, 240, 279
SduI GDGCHC 1 cut(s) 233
SetI ASST 5 cut(s) 73, 86, 165, 264, 302
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 319
Sse9I AATT 1 cut(s) 214
SseBI AGGCCT 1 cut(s) 19
SspMI CTAG 2 cut(s) 47, 116
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 3 cut(s) 19, 238, 277
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 214
Tru1I TTAA 3 cut(s) 302, 326, 380
Tru9I TTAA 3 cut(s) 302, 326, 380
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 17, 227
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XspI CTAG 2 cut(s) 47, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.