Rmu_sc0009538.1_g000015

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009538.1
OG0001297
Physical Location & Seq
Forward (+)
83526 .. 86159
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009538.1_g000015.1.cds

Sequence Viewer

Length: 1116 bp
atggtatcatcaaaaccagccagctgctttgatccctctcatcatcactcaggagtcagtattattgaggaactcatcactgatgattcagtgatcgaagtcccgcaaaactatgttatcccagaccaggagtcttcaatctctcatgggactatccttgccacaattcccaccattgacatgagacagttggtcctaatcaatcaatttgcaaacaacgatgaactggagaagttgcactcaacatgcaaagaatggggaatttttcagttggttaaccatggagttagctctgcactactggacaaagtgaagcaagaattagaggattttttcaagcttcccttggaagagaaaatgagatacaaagtaaggccaggtgatgttgacggctatggaactgttgtcaaatcgcaagatcaaaaactcgactggggtaacaggttcttcatgtttaccaacccgagaaggaaaccccatcttttcccggagctgcctacatccctgaggaataccttggagacatacatgttggaattacaaaagattgcccgaacccttttagggttcatgggaaaacttctaaagatgaagatggaggagatggaagagttgtttgaagatggtctgcagtcactgaggatgactcactatcctccatgcccaaaaccagagctagttgttggcctcaggccacattctgatggtagtggcatcactattctccaccaggttgatggagttcaaggccttcaaattaaaaaagatggggcttggtcccctgtgatctttgaccatggtgcctttgttgtcaatgttggagacattctagaggtttttgatgctattctaagtgatgggctttataaaagtatcgagcacagagtgactgtgaactcagagaaagaaaggatttcaattgctatgttcttcatgcccaaacttgaggcagaaattggacctgtgaccaccctgagagatcctcagaagccaccatcttctgggaaaataggaatggaaaaatatgttgagaagtactttgctcataacctaaatggaaaaacacccttggagcgaatgaaaacagaagacagtgaagagaaaactactgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

371

Amino Acids

42.02

Weight (kDa)

5.59

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 867
AccB1I GGYRCC 1 cut(s) 800
AccB7I CCANNNNNTGG 1 cut(s) 1001
AciI CCGC 1 cut(s) 104
AclWI GGATC 2 cut(s) 26, 974
AcsI RAATTY 1 cut(s) 261
AdeI CACNNNGTG 1 cut(s) 886
AfaI GTAC 1 cut(s) 1037
AfiI CCNNNNNNNGG 3 cut(s) 127, 564, 1001
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 6 cut(s) 138, 337, 620, 746, 755, 918
AhdI GACNNNNNGTC 2 cut(s) 130, 191
AjnI CCWGG 3 cut(s) 126, 376, 729
AluBI AGCT 5 cut(s) 24, 291, 340, 493, 676
AluI AGCT 5 cut(s) 24, 291, 340, 493, 676
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 3 cut(s) 178, 515, 816
AlwI GGATC 2 cut(s) 26, 974
AlwNI CAGNNNCTG 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 463
AoxI GGCC 4 cut(s) 374, 685, 692, 748
ApeKI GCWGC 2 cut(s) 24, 493
ApoI RAATTY 1 cut(s) 261
AspS9I GGNCC 3 cut(s) 193, 777, 959
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 463
AvaII GGWCC 3 cut(s) 193, 777, 959
AxyI CCTNAGG 2 cut(s) 506, 689
BanI GGYRCC 1 cut(s) 800
BbsI GAAGAC 2 cut(s) 126, 1095
Bbv12I GWGCWC 1 cut(s) 882
BbvI GCAGC 2 cut(s) 11, 480
BccI CCATC 9 cut(s) 486, 589, 598, 617, 698, 731, 761, 851, 1003
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 3 cut(s) 128, 378, 731
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 3 cut(s) 178, 515, 816
BfaI CTAG 2 cut(s) 677, 830
BfmI CTRYAG 1 cut(s) 629
BisI GCNGC 2 cut(s) 25, 494
BlsI GCNGC 2 cut(s) 26, 495
BmcAI AGTACT 1 cut(s) 1037
Bme1390I CCNGG 4 cut(s) 128, 378, 488, 731
Bme18I GGWCC 3 cut(s) 193, 777, 959
BmeRI GACNNNNNGTC 2 cut(s) 130, 191
BmeT110I CYCGRG 1 cut(s) 463
BmgT120I GGNCC 3 cut(s) 193, 777, 959
BmiI GGNNCC 2 cut(s) 779, 802
BmrFI CCNGG 4 cut(s) 128, 378, 488, 731
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 2 cut(s) 723, 832
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 2 cut(s) 126, 1095
BplI GAGNNNNNCTC 4 cut(s) 631, 663, 967, 999
BpmI CTGGAG 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 965
BpuMI CCSGG 1 cut(s) 488
BsaJI CCNNGG 5 cut(s) 280, 345, 516, 796, 1068
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 564, 1001
Bse1I ACTGG 3 cut(s) 231, 306, 437
Bse21I CCTNAGG 2 cut(s) 506, 689
BseBI CCWGG 3 cut(s) 128, 378, 731
BseDI CCNNGG 5 cut(s) 280, 345, 516, 796, 1068
BseGI GGATG 2 cut(s) 500, 648
BseLI CCNNNNNNNGG 3 cut(s) 127, 564, 1001
BseMII CTCAG 7 cut(s) 63, 497, 629, 703, 912, 965, 998
BseNI ACTGG 3 cut(s) 231, 306, 437
BseRI GAGGAG 1 cut(s) 614
BseXI GCAGC 2 cut(s) 11, 480
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 4 cut(s) 376, 687, 694, 750
BshNI GGYRCC 1 cut(s) 800
BsiHKAI GWGCWC 1 cut(s) 882
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 3 cut(s) 86, 163, 763
BslI CCNNNNNNNGG 3 cut(s) 127, 564, 1001
BsmAI GTCTC 3 cut(s) 178, 515, 816
BsmFI GGGAC 3 cut(s) 86, 163, 763
BsnI GGCC 4 cut(s) 376, 687, 694, 750
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 882
Bsp143I GATC 5 cut(s) 31, 93, 418, 786, 979
Bsp19I CCATGG 2 cut(s) 280, 796
BspACI CCGC 1 cut(s) 104
BspANI GGCC 4 cut(s) 376, 687, 694, 750
BspCNI CTCAG 7 cut(s) 62, 498, 630, 702, 911, 966, 997
BspLI GGNNCC 2 cut(s) 779, 802
BspMAI CTGCAG 1 cut(s) 633
BspPI GGATC 2 cut(s) 26, 974
BspT107I GGYRCC 1 cut(s) 800
BsrI ACTGG 3 cut(s) 231, 306, 437
BssECI CCNNGG 5 cut(s) 280, 345, 516, 796, 1068
BssMI GATC 5 cut(s) 31, 93, 418, 786, 979
BssT1I CCWWGG 5 cut(s) 280, 345, 516, 796, 1068
Bst2UI CCWGG 3 cut(s) 128, 378, 731
Bst4CI ACNGT 4 cut(s) 189, 403, 892, 1094
Bst6I CTCTTC 3 cut(s) 345, 603, 1092
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 8 cut(s) 49, 506, 638, 689, 851, 898, 974, 984
BstDSI CCRYGG 2 cut(s) 280, 796
BstF5I GGATG 2 cut(s) 500, 648
BstKTI GATC 5 cut(s) 34, 96, 421, 789, 982
BstMAI GTCTC 3 cut(s) 178, 515, 816
BstMBI GATC 5 cut(s) 31, 93, 418, 786, 979
BstNI CCWGG 3 cut(s) 128, 378, 731
BstNSI RCATGY 2 cut(s) 249, 532
BstSCI CCNGG 4 cut(s) 126, 376, 486, 729
BstSFI CTRYAG 1 cut(s) 629
BstV1I GCAGC 2 cut(s) 11, 480
BstV2I GAAGAC 2 cut(s) 126, 1095
BstX2I RGATCY 1 cut(s) 979
BstXI CCANNNNNNTGG 1 cut(s) 737
BstYI RGATCY 1 cut(s) 979
Bsu36I CCTNAGG 2 cut(s) 506, 689
BsuRI GGCC 4 cut(s) 376, 687, 694, 750
BtgI CCRYGG 2 cut(s) 280, 796
BtsCI GGATG 2 cut(s) 500, 648
BtsIMutI CAGTG 4 cut(s) 78, 96, 635, 1099
Cac8I GCNNGC 1 cut(s) 22
CaiI CAGNNNCTG 1 cut(s) 637
Cfr13I GGNCC 3 cut(s) 193, 777, 959
CsiI ACCWGGT 1 cut(s) 729
Csp6I GTAC 1 cut(s) 1036
CviQI GTAC 1 cut(s) 1036
DdeI CTNAG 8 cut(s) 49, 506, 638, 689, 851, 898, 974, 984
DpnI GATC 5 cut(s) 33, 95, 420, 788, 981
DpnII GATC 5 cut(s) 31, 93, 418, 786, 979
DraIII CACNNNGTG 1 cut(s) 886
DriI GACNNNNNGTC 2 cut(s) 130, 191
Eam1104I CTCTTC 3 cut(s) 345, 603, 1092
Eam1105I GACNNNNNGTC 2 cut(s) 130, 191
EarI CTCTTC 3 cut(s) 345, 603, 1092
Eco130I CCWWGG 5 cut(s) 280, 345, 516, 796, 1068
Eco147I AGGCCT 1 cut(s) 750
Eco47I GGWCC 3 cut(s) 193, 777, 959
Eco81I CCTNAGG 2 cut(s) 506, 689
Eco88I CYCGRG 1 cut(s) 463
EcoRII CCWGG 3 cut(s) 126, 376, 729
EcoT14I CCWWGG 5 cut(s) 280, 345, 516, 796, 1068
ErhI CCWWGG 5 cut(s) 280, 345, 516, 796, 1068
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 3 cut(s) 86, 163, 763
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 25, 494
FokI GGATG 2 cut(s) 487, 655
Fsp4HI GCNGC 2 cut(s) 25, 494
FspBI CTAG 2 cut(s) 677, 830
GluI GCNGC 2 cut(s) 25, 494
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 4 cut(s) 376, 687, 694, 750
HapII CCGG 1 cut(s) 488
HincII GTYRAC 2 cut(s) 277, 388
HindII GTYRAC 2 cut(s) 277, 388
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 4 cut(s) 54, 86, 131, 646
HpaI GTTAAC 1 cut(s) 277
HpaII CCGG 1 cut(s) 488
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 4 cut(s) 277, 388, 456, 895
Hpy188I TCNGA 3 cut(s) 703, 901, 987
Hpy188III TCNNGA 2 cut(s) 51, 830
Hpy8I GTNNAC 4 cut(s) 277, 388, 456, 895
HpyAV CCTTC 2 cut(s) 462, 761
HpyCH4III ACNGT 4 cut(s) 189, 403, 892, 1094
HpyCH4V TGCA 6 cut(s) 212, 238, 249, 296, 631, 1112
HpyF3I CTNAG 8 cut(s) 49, 506, 638, 689, 851, 898, 974, 984
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 5 cut(s) 31, 93, 418, 786, 979
LmnI GCTCC 2 cut(s) 490, 1072
Lsp1109I GCAGC 2 cut(s) 11, 480
LweI GCATC 2 cut(s) 723, 832
MabI ACCWGGT 1 cut(s) 729
MaeI CTAG 2 cut(s) 677, 830
MaeIII GTNAC 4 cut(s) 437, 633, 886, 964
MalI GATC 5 cut(s) 33, 95, 420, 788, 981
MboI GATC 5 cut(s) 31, 93, 418, 786, 979
MfeI CAATTG 1 cut(s) 918
MflI RGATCY 1 cut(s) 979
MhlI GDGCHC 1 cut(s) 882
MluCI AATT 8 cut(s) 165, 206, 261, 320, 536, 756, 918, 954
MlyI GAGTC 3 cut(s) 63, 140, 640
MmeI TCCRAC 2 cut(s) 513, 799
MseI TTAA 2 cut(s) 276, 759
MslI CAYNNNNRTG 2 cut(s) 179, 702
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 4 cut(s) 128, 378, 488, 731
MunI CAATTG 1 cut(s) 918
MvaI CCWGG 3 cut(s) 128, 378, 731
NciI CCSGG 1 cut(s) 488
NcoI CCATGG 2 cut(s) 280, 796
NdeII GATC 5 cut(s) 31, 93, 418, 786, 979
NlaIV GGNNCC 2 cut(s) 779, 802
NmuCI GTSAC 3 cut(s) 633, 886, 964
NspI RCATGY 2 cut(s) 249, 532
PceI AGGCCT 1 cut(s) 750
PciI ACATGT 1 cut(s) 528
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 1001
PfoI TCCNGGA 1 cut(s) 486
PkrI GCNGC 2 cut(s) 26, 495
PleI GAGTC 3 cut(s) 62, 139, 640
PpsI GAGTC 3 cut(s) 62, 139, 640
PscI ACATGT 1 cut(s) 528
PsiI TTATAA 1 cut(s) 867
Psp6I CCWGG 3 cut(s) 126, 376, 729
PspGI CCWGG 3 cut(s) 126, 376, 729
PspN4I GGNNCC 2 cut(s) 779, 802
PspPI GGNCC 3 cut(s) 193, 777, 959
PstI CTGCAG 1 cut(s) 633
PstNI CAGNNNCTG 1 cut(s) 637
PsuI RGATCY 1 cut(s) 979
PvuII CAGCTG 1 cut(s) 24
RsaI GTAC 1 cut(s) 1037
RsaNI GTAC 1 cut(s) 1036
RseI CAYNNNNRTG 2 cut(s) 179, 702
SaqAI TTAA 2 cut(s) 276, 759
SatI GCNGC 2 cut(s) 25, 494
Sau3AI GATC 5 cut(s) 31, 93, 418, 786, 979
Sau96I GGNCC 3 cut(s) 193, 777, 959
ScaI AGTACT 1 cut(s) 1037
SchI GAGTC 3 cut(s) 63, 140, 640
ScrFI CCNGG 4 cut(s) 128, 378, 488, 731
SduI GDGCHC 1 cut(s) 882
SexAI ACCWGGT 1 cut(s) 729
SfaNI GCATC 2 cut(s) 723, 832
SfcI CTRYAG 1 cut(s) 629
SinI GGWCC 3 cut(s) 193, 777, 959
SmiMI CAYNNNNRTG 2 cut(s) 179, 702
SmlI CTYRAG 1 cut(s) 944
SmoI CTYRAG 1 cut(s) 944
Sse9I AATT 8 cut(s) 165, 206, 261, 320, 536, 756, 918, 954
SseBI AGGCCT 1 cut(s) 750
SsiI CCGC 1 cut(s) 104
SspMI CTAG 2 cut(s) 677, 830
StuI AGGCCT 1 cut(s) 750
StyD4I CCNGG 4 cut(s) 126, 376, 486, 729
StyI CCWWGG 5 cut(s) 280, 345, 516, 796, 1068
TaaI ACNGT 4 cut(s) 189, 403, 892, 1094
TaqI TCGA 3 cut(s) 96, 429, 876
TasI AATT 8 cut(s) 165, 206, 261, 320, 536, 756, 918, 954
TatI WGTACW 1 cut(s) 1035
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 276, 759
Tru9I TTAA 2 cut(s) 276, 759
TscAI CASTG 4 cut(s) 85, 96, 642, 1099
TseFI GTSAC 3 cut(s) 633, 886, 964
TseI GCWGC 2 cut(s) 24, 493
Tsp45I GTSAC 3 cut(s) 633, 886, 964
TspDTI ATGAA 6 cut(s) 237, 439, 559, 605, 922, 1094
TspRI CASTG 4 cut(s) 85, 96, 642, 1099
Van91I CCANNNNNTGG 1 cut(s) 1001
VpaK11BI GGWCC 3 cut(s) 193, 777, 959
XapI RAATTY 1 cut(s) 261
XbaI TCTAGA 1 cut(s) 829
XceI RCATGY 2 cut(s) 249, 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 734
XspI CTAG 2 cut(s) 677, 830
ZrmI AGTACT 1 cut(s) 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.