Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007569.1

Orthogroup ID

OG0001297

Physical Location & Seq

Genomic Coordinates Forward (+)

6746 .. 7414

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007569.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggcatcaccccagctacggctaccaggaggctttgagagctctagctctcttatgagcatcctggagatcaccaaagagtcattaactgaagtcccacaatgttacgtccgtagtttcgaagaaccagaactttcatctgatctctctgataagcccaccgtaatcccaaccatcgatatgataaaactagtaacgggatcagaagcttcggattctgaactggaaaatctgcgctcaacttgcacagagtggggaatctttcagttggtgaaccatggagttagccctatgcttttggagaagctgaagtacgaggttgaagaattctttaagcttcccttggaagagaaaatgaagtatcagataagacctggtgacgttgaaggctatggatccatagcctataaagagcaaaaacgtgactggggtaatagattctacatgaccatgaaccctgttcataggagaaagccatacctcttcccagagctcccttcatccctcaggtctagcctctctctctatacatcgaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

179

Amino Acids

20.5

Weight (kDa)

5.09

Isoelectric Point (pI)

66.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001297)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27770 FvH4_6g28170
malus_domestica	MD05G1292600.v1.1 MD05G1292700.v1.1 MD10G1268500.v1.1
prunus_persica	Prupe.4G072700_v2.0.a1
pyrus_communis	pycom05g26880 pycom05g26910 pycom10g22500
rosa_chinensis	RchiOBHm_Chr2g0132141 RchiOBHm_Chr2g0132151 RchiOBHm_Chr2g0132181 RchiOBHm_Chr5g0012711 RchiOBHm_Chr5g0026041
rosa_laevigata	RLG00000019231 RLG00000019232 RLG00000019237 RLG00000031933 RLG00000031934 RLG00000031936 RLG00000031949 RLG00000031950
rosa_multiflora	Rmu_sc0004583.1_g000011 Rmu_sc0007569.1_g000003 Rmu_sc0009538.1_g000009 Rmu_sc0009538.1_g000015
rosa_roxburghii	Rroxscaffold_1G00063920 Rroxscaffold_2G00112310 Rroxscaffold_2G00112360 Rroxscaffold_2G00112370
rosa_rugosa	Rorug02G0302500 Rorug02G0302600 Rorug05G0003800 Rorug05G0003900
rosa_samantha	Rh2AG355600 Rh2AG355700 Rh2AG356000 Rh2BG361700 Rh2BG362100 Rh2CG339200 Rh2DG378600 Rh2DG378800 Rh2DG379200 Rh5AG097600 Rh5AG182600 Rh5BG094200 Rh5CG106300 Rh5CG199100 Rh5DG093000 Rh5DG181600
rosa_wichuraiana	Rw2G028870 Rw2G028880 Rw2G028910 Rw5G008550 Rw5G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	208, 390, 403
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	111, 329
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	323, 386
AhlI	ACTAGT	1 cut(s)	190
AjnI	CCWGG	3 cut(s)	25, 63, 373
AluBI	AGCT	7 cut(s)	16, 42, 48, 209, 307, 337, 493
AluI	AGCT	7 cut(s)	16, 42, 48, 209, 307, 337, 493
Alw21I	GWGCWC	2 cut(s)	44, 495
AlwI	GGATC	3 cut(s)	208, 390, 403
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	237
AsuHPI	GGTGA	3 cut(s)	64, 283, 389
AsuII	TTCGAA	1 cut(s)	120
AxyI	CCTNAGG	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	395
BanII	GRGCYC	2 cut(s)	44, 495
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
Bbv12I	GWGCWC	2 cut(s)	44, 495
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	3 cut(s)	27, 65, 375
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	3 cut(s)	45, 191, 513
Bme1390I	CCNGG	3 cut(s)	27, 65, 375
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	3 cut(s)	27, 65, 375
BmrI	ACTGGG	1 cut(s)	436
BmsI	GCATC	2 cut(s)	14, 69
BmuI	ACTGGG	1 cut(s)	436
BpmI	CTGGAG	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	277, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse1I	ACTGG	2 cut(s)	228, 431
Bse21I	CCTNAGG	1 cut(s)	506
BseBI	CCWGG	3 cut(s)	27, 65, 375
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	277, 342
BseGI	GGATG	2 cut(s)	60, 500
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	520
BseNI	ACTGG	2 cut(s)	228, 431
BseYI	CCCAGC	1 cut(s)	12
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	44, 495
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	80
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	44, 495
Bsp143I	GATC	4 cut(s)	69, 142, 200, 395
Bsp19I	CCATGG	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	519
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	397
BspPI	GGATC	3 cut(s)	208, 390, 403
BspT104I	TTCGAA	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	228, 431
BssECI	CCNNGG	2 cut(s)	277, 342
BssMI	GATC	4 cut(s)	69, 142, 200, 395
BssT1I	CCWWGG	2 cut(s)	277, 342
Bst2UI	CCWGG	3 cut(s)	27, 65, 375
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	342, 488
BstBI	TTCGAA	1 cut(s)	120
BstDEI	CTNAG	1 cut(s)	506
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	60, 500
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	72, 145, 203, 398
BstMBI	GATC	4 cut(s)	69, 142, 200, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 243
BstNI	CCWGG	3 cut(s)	27, 65, 375
BstSCI	CCNGG	3 cut(s)	25, 63, 373
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
Bsu15I	ATCGAT	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	506
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	60, 500
CfoI	GCGC	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	177
CsiI	ACCWGGT	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	278, 445, 451
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	4 cut(s)	71, 144, 202, 397
DpnII	GATC	4 cut(s)	69, 142, 200, 395
DraIII	CACNNNGTG	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	342, 488
EarI	CTCTTC	2 cut(s)	342, 488
Ecl136II	GAGCTC	2 cut(s)	42, 493
Eco130I	CCWWGG	2 cut(s)	277, 342
Eco24I	GRGCYC	2 cut(s)	44, 495
Eco53kI	GAGCTC	2 cut(s)	42, 493
Eco57I	CTGAAG	2 cut(s)	111, 329
Eco81I	CCTNAGG	1 cut(s)	506
EcoICRI	GAGCTC	2 cut(s)	42, 493
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	25, 63, 373
EcoT14I	CCWWGG	2 cut(s)	277, 342
EcoT38I	GRGCYC	2 cut(s)	44, 495
ErhI	CCWWGG	2 cut(s)	277, 342
FaeI	CATG	3 cut(s)	281, 448, 454
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	277, 444, 450
FokI	GGATG	2 cut(s)	47, 487
FriOI	GRGCYC	2 cut(s)	44, 495
FspBI	CTAG	3 cut(s)	45, 191, 513
GlaI	GCGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	16
GsuI	CTGGAG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	281, 448, 454
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	2 cut(s)	207, 335
HinfI	GANTC	4 cut(s)	80, 215, 258, 438
HphI	GGTGA	3 cut(s)	64, 283, 389
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	6 cut(s)	142, 151, 205, 214, 220, 366
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	380, 507
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	3 cut(s)	108, 381, 421
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 243
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	3 cut(s)	108, 381, 421
Hsp92II	CATG	3 cut(s)	281, 448, 454
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	69, 142, 200, 395
LmnI	GCTCC	1 cut(s)	498
LweI	GCATC	2 cut(s)	14, 69
MabI	ACCWGGT	1 cut(s)	373
MaeI	CTAG	3 cut(s)	45, 191, 513
MaeII	ACGT	3 cut(s)	108, 381, 421
MaeIII	GTNAC	4 cut(s)	104, 193, 377, 422
MalI	GATC	4 cut(s)	71, 144, 202, 397
MboI	GATC	4 cut(s)	69, 142, 200, 395
MboII	GAAGA	4 cut(s)	134, 335, 359, 475
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	2 cut(s)	44, 495
MluCI	AATT	2 cut(s)	326, 535
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	23, 310, 491, 515, 527
MseI	TTAA	3 cut(s)	86, 333, 538
MslI	CAYNNNNRTG	2 cut(s)	179, 449
MspR9I	CCNGG	3 cut(s)	27, 65, 375
MvaI	CCWGG	3 cut(s)	27, 65, 375
MwoI	GCNNNNNNNGC	2 cut(s)	39, 243
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	4 cut(s)	69, 142, 200, 395
NlaIII	CATG	3 cut(s)	281, 448, 454
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	2 cut(s)	377, 422
NspV	TTCGAA	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	215, 258, 438
PfoI	TCCNGGA	1 cut(s)	63
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp124BI	GAGCTC	2 cut(s)	44, 495
Psp6I	CCWGG	3 cut(s)	25, 63, 373
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	3 cut(s)	25, 63, 373
PspN4I	GGNNCC	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	395
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	2 cut(s)	179, 449
SacI	GAGCTC	2 cut(s)	44, 495
SaqAI	TTAA	3 cut(s)	86, 333, 538
Sau3AI	GATC	4 cut(s)	69, 142, 200, 395
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	3 cut(s)	27, 65, 375
SduI	GDGCHC	2 cut(s)	44, 495
SexAI	ACCWGGT	1 cut(s)	373
SfaNI	GCATC	2 cut(s)	14, 69
SfuI	TTCGAA	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	179, 449
SpeI	ACTAGT	1 cut(s)	190
Sse9I	AATT	2 cut(s)	326, 535
SspMI	CTAG	3 cut(s)	45, 191, 513
SstI	GAGCTC	2 cut(s)	44, 495
StyD4I	CCNGG	3 cut(s)	25, 63, 373
StyI	CCWWGG	2 cut(s)	277, 342
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	3 cut(s)	111, 384, 424
TaqI	TCGA	3 cut(s)	120, 177, 533
TasI	AATT	2 cut(s)	326, 535
TfiI	GAWTC	3 cut(s)	215, 258, 438
Tru1I	TTAA	3 cut(s)	86, 333, 538
Tru9I	TTAA	3 cut(s)	86, 333, 538
TseFI	GTSAC	2 cut(s)	377, 422
Tsp45I	GTSAC	2 cut(s)	377, 422
TspDTI	ATGAA	5 cut(s)	126, 371, 452, 467, 489
TspGWI	ACGGA	1 cut(s)	101
XapI	RAATTY	1 cut(s)	326
XspI	CTAG	3 cut(s)	45, 191, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.