RLG00000031933

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001297
Physical Location & Seq
Forward (+)
9626517 .. 9629285
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031933

Sequence Viewer

Length: 1092 bp
ATGGCATCACCCCAGCTACGGCTACCAGGCGGCTTTGAGAGCTCTAGTTCTCTTATGAGCATCCTGGAGATCACCAAACAGTCATTAACTGAAGTCCCACAATGTTACGTCCGTAGTTTCGAAGAACCAGAACTTTCATCTGATCTCTCTGATAAGCCCACCGCAATCCCAACCATCGATATGATAAAACTAGTAACGGGATCAGAAGCTTCAGATTCTGAACTGGAAAATCTGCGCTCAACTTGCAAAGAGTGGGGAATCTTTCAGTTGGTGAACCATGGAGTTAGCCCTATGCTTTTGGAGAAGCTGAAGTACGAGGTTGAAGAATTTTTTAAGCTTCCCTTGGAAGAGAAAATGAAGTATCAGATAAGGCCTGGTGACGTTGAAGGCTACGGATCCATAGCCTATAAAGAGCAAAAACGTGACTGGAGTAATAGATTCTACATGACCATGAACCCTGTTCATAGGAGAAAGCCATACCTCTTCCCAGAGCTCCCTTCATCCCTCAGGAATACCTTCGAGTCATACTACTTGGAACTGAAGCAACTAGCCATGAAACTTCTTGGGTTTCTGGGGAAGGCTGTGAAGATAGAGATAAAAGAGATTGAGGAGATGTTTGCAGATGGGATGCAGTCAGTGAGGATGAATTACTATCCTGCATGCCCACAACCAGAGCTGGTCATCGGCCTCACACCTCACTCGGACGCTTCCGGGATCACCATCCTCCACGAGCTTAACGGTGTGGGTGGTCTGCAGATTAAGAAAGATGGGGTTTGGGTTCCTGTCAACTTCCGTGAAGATGCCTTTGTGGTTAATGCAGGGGACATCTTTGAGATCCTGAGCAATGGAGCTTACAAGAGCATGGAGCACAGAGCTATGGTGAACTCTGAGCAAGAGAGGATCTCAATCGCTATGTTCTTCAACCCCAAATTCGAGGCAGAAATTGGACCAGTGACCAGCTTGATAACCCCAGAAAACCCACCACTGTTCAAAAGGATTGGGATGGAACAGTACGTCCAAGATTTCTACACCCGCCGTAAGCTCGACGGGAAATCAAACTTGGACCAAATGAGGCTCCAGAATGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

364

Amino Acids

41.43

Weight (kDa)

5.33

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 56 - 155 4.1e-26 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 211 - 309 6.1e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 30, 162, 1033
AclWI GGATC 6 cut(s) 208, 390, 403, 722, 829, 908
AcsI RAATTY 2 cut(s) 326, 929
AcuI CTGAAG 4 cut(s) 111, 195, 329, 560
AfaI GTAC 2 cut(s) 314, 1013
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 4 cut(s) 323, 386, 922, 991
AhlI ACTAGT 1 cut(s) 190
AjnI CCWGG 3 cut(s) 25, 63, 373
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
AloI GAACNNNNNNTCC 2 cut(s) 999, 1031
Alw21I GWGCWC 3 cut(s) 44, 495, 870
AlwI GGATC 6 cut(s) 208, 390, 403, 722, 829, 908
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 2 cut(s) 371, 685
ApoI RAATTY 2 cut(s) 326, 929
Asp700I GAANNNNTTC 1 cut(s) 515
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 947, 1063
AsuC2I CCSGG 1 cut(s) 712
AsuHPI GGTGA 5 cut(s) 64, 283, 389, 709, 892
AsuII TTCGAA 1 cut(s) 120
AvaII GGWCC 2 cut(s) 947, 1063
AxyI CCTNAGG 1 cut(s) 506
BamHI GGATCC 1 cut(s) 395
BanII GRGCYC 2 cut(s) 44, 495
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BauI CACGAG 1 cut(s) 728
Bbv12I GWGCWC 3 cut(s) 44, 495, 870
BccI CCATC 5 cut(s) 182, 617, 728, 761, 997
BceAI ACGGC 2 cut(s) 35, 1020
BciT130I CCWGG 3 cut(s) 27, 65, 375
BcnI CCSGG 1 cut(s) 712
BcuI ACTAGT 1 cut(s) 190
BfaI CTAG 3 cut(s) 45, 191, 548
BfmI CTRYAG 1 cut(s) 752
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 4 cut(s) 27, 65, 375, 712
Bme18I GGWCC 2 cut(s) 947, 1063
BmgT120I GGNCC 2 cut(s) 947, 1063
BmiI GGNNCC 3 cut(s) 397, 780, 1076
BmrFI CCNGG 4 cut(s) 27, 65, 375, 712
BmsI GCATC 4 cut(s) 14, 69, 618, 790
BplI GAGNNNNNCTC 2 cut(s) 887, 919
BpmI CTGGAG 3 cut(s) 86, 448, 1061
Bpu10I CCTNAGC 1 cut(s) 839
Bpu14I TTCGAA 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 712
Bsa29I ATCGAT 1 cut(s) 177
BsaBI GATNNNNATC 2 cut(s) 719, 905
BsaJI CCNNGG 2 cut(s) 277, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 3 cut(s) 228, 431, 950
Bse21I CCTNAGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 850
Bse8I GATNNNNATC 2 cut(s) 719, 905
BseBI CCWGG 3 cut(s) 27, 65, 375
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 277, 342
BseGI GGATG 6 cut(s) 60, 500, 633, 648, 720, 1008
BseJI GATNNNNATC 2 cut(s) 719, 905
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 3 cut(s) 520, 830, 879
BseNI ACTGG 3 cut(s) 228, 431, 950
BseRI GAGGAG 1 cut(s) 623
BseYI CCCAGC 1 cut(s) 12
BshFI GGCC 2 cut(s) 373, 687
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 3 cut(s) 44, 495, 870
BsiSI CCGG 1 cut(s) 711
BslFI GGGAC 2 cut(s) 80, 836
BslI CCNNNNNNNGG 1 cut(s) 18
BsmFI GGGAC 2 cut(s) 80, 836
BsnI GGCC 2 cut(s) 373, 687
Bsp119I TTCGAA 1 cut(s) 120
Bsp1286I GDGCHC 3 cut(s) 44, 495, 870
Bsp143I GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 3 cut(s) 30, 162, 1033
BspANI GGCC 2 cut(s) 373, 687
BspCNI CTCAG 3 cut(s) 519, 831, 880
BspDI ATCGAT 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 397, 780, 1076
BspMAI CTGCAG 1 cut(s) 756
BspPI GGATC 6 cut(s) 208, 390, 403, 722, 829, 908
BspT104I TTCGAA 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 850
BsrI ACTGG 3 cut(s) 228, 431, 950
BssECI CCNNGG 2 cut(s) 277, 342
BssMI GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
BssSI CACGAG 1 cut(s) 728
BssT1I CCWWGG 2 cut(s) 277, 342
Bst2BI CACGAG 1 cut(s) 728
Bst2UI CCWGG 3 cut(s) 27, 65, 375
Bst4CI ACNGT 4 cut(s) 81, 740, 987, 1011
Bst6I CTCTTC 2 cut(s) 342, 488
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 661
BstDEI CTNAG 3 cut(s) 506, 839, 888
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 6 cut(s) 60, 500, 633, 648, 720, 1008
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 7 cut(s) 72, 145, 203, 398, 717, 837, 903
BstMBI GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
BstMWI GCNNNNNNNGC 2 cut(s) 39, 243
BstNI CCWGG 3 cut(s) 27, 65, 375
BstNSI RCATGY 1 cut(s) 663
BstSCI CCNGG 4 cut(s) 25, 63, 373, 710
BstSFI CTRYAG 1 cut(s) 752
BstX2I RGATCY 3 cut(s) 395, 834, 900
BstYI RGATCY 3 cut(s) 395, 834, 900
Bsu15I ATCGAT 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 506
BsuRI GGCC 2 cut(s) 373, 687
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 6 cut(s) 60, 500, 633, 648, 720, 1008
BtsIMutI CAGTG 3 cut(s) 642, 957, 983
Cac8I GCNNGC 1 cut(s) 661
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 947, 1063
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 713
Csp6I GTAC 2 cut(s) 313, 1012
CviAII CATG 6 cut(s) 278, 445, 451, 553, 660, 862
CviQI GTAC 2 cut(s) 313, 1012
DdeI CTNAG 3 cut(s) 506, 839, 888
DpnI GATC 7 cut(s) 71, 144, 202, 397, 716, 836, 902
DpnII GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
Eam1104I CTCTTC 2 cut(s) 342, 488
EarI CTCTTC 2 cut(s) 342, 488
Ecl136II GAGCTC 2 cut(s) 42, 493
Eco130I CCWWGG 2 cut(s) 277, 342
Eco147I AGGCCT 1 cut(s) 373
Eco24I GRGCYC 2 cut(s) 44, 495
Eco47I GGWCC 2 cut(s) 947, 1063
Eco53kI GAGCTC 2 cut(s) 42, 493
Eco57I CTGAAG 4 cut(s) 111, 195, 329, 560
Eco81I CCTNAGG 1 cut(s) 506
EcoICRI GAGCTC 2 cut(s) 42, 493
EcoRII CCWGG 3 cut(s) 25, 63, 373
EcoT14I CCWWGG 2 cut(s) 277, 342
EcoT38I GRGCYC 2 cut(s) 44, 495
ErhI CCWWGG 2 cut(s) 277, 342
FaeI CATG 6 cut(s) 281, 448, 454, 556, 663, 865
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 2 cut(s) 80, 836
FatI CATG 6 cut(s) 277, 444, 450, 552, 659, 861
FauI CCCGC 1 cut(s) 1040
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 6 cut(s) 47, 487, 640, 655, 707, 1015
FriOI GRGCYC 2 cut(s) 44, 495
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 3 cut(s) 45, 191, 548
GlaI GCGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 31
GsaI CCCAGC 1 cut(s) 16
GsuI CTGGAG 3 cut(s) 86, 448, 1061
HaeIII GGCC 2 cut(s) 373, 687
HapII CCGG 1 cut(s) 711
HgaI GACGC 1 cut(s) 713
HhaI GCGC 1 cut(s) 237
Hin1II CATG 6 cut(s) 281, 448, 454, 556, 663, 865
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HindIII AAGCTT 2 cut(s) 207, 335
HinfI GANTC 4 cut(s) 215, 258, 438, 521
HpaII CCGG 1 cut(s) 711
HphI GGTGA 5 cut(s) 64, 283, 389, 709, 892
Hpy166II GTNNAC 3 cut(s) 274, 787, 883
Hpy188I TCNGA 8 cut(s) 142, 151, 205, 214, 220, 366, 703, 889
Hpy188III TCNNGA 3 cut(s) 508, 838, 1078
Hpy8I GTNNAC 3 cut(s) 274, 787, 883
Hpy99I CGWCG 1 cut(s) 1049
HpyAV CCTTC 4 cut(s) 380, 507, 526, 571
HpyCH4III ACNGT 4 cut(s) 81, 740, 987, 1011
HpyCH4IV ACGT 4 cut(s) 108, 381, 421, 1014
HpyCH4V TGCA 6 cut(s) 246, 620, 631, 659, 754, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 243
HpyF3I CTNAG 3 cut(s) 506, 839, 888
HpySE526I ACGT 4 cut(s) 108, 381, 421, 1014
Hsp92II CATG 6 cut(s) 281, 448, 454, 556, 663, 865
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
LmnI GCTCC 4 cut(s) 498, 848, 865, 1080
LweI GCATC 4 cut(s) 14, 69, 618, 790
MaeI CTAG 3 cut(s) 45, 191, 548
MaeII ACGT 4 cut(s) 108, 381, 421, 1014
MaeIII GTNAC 5 cut(s) 104, 193, 377, 422, 952
MalI GATC 7 cut(s) 71, 144, 202, 397, 716, 836, 902
MboI GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
MboII GAAGA 7 cut(s) 134, 335, 359, 475, 598, 809, 910
MflI RGATCY 3 cut(s) 395, 834, 900
MhlI GDGCHC 3 cut(s) 44, 495, 870
MluCI AATT 5 cut(s) 326, 646, 929, 942, 1087
MlyI GAGTC 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 515
MseI TTAA 5 cut(s) 86, 333, 735, 759, 813
MslI CAYNNNNRTG 2 cut(s) 179, 449
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 4 cut(s) 27, 65, 375, 712
MvaI CCWGG 3 cut(s) 27, 65, 375
MwoI GCNNNNNNNGC 2 cut(s) 39, 243
NciI CCSGG 1 cut(s) 712
NcoI CCATGG 1 cut(s) 277
NdeII GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
NlaIII CATG 6 cut(s) 281, 448, 454, 556, 663, 865
NlaIV GGNNCC 3 cut(s) 397, 780, 1076
NmuCI GTSAC 3 cut(s) 377, 422, 952
NspI RCATGY 1 cut(s) 663
NspV TTCGAA 1 cut(s) 120
PaeI GCATGC 1 cut(s) 663
PceI AGGCCT 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 515
PfeI GAWTC 3 cut(s) 215, 258, 438
PfoI TCCNGGA 2 cut(s) 63, 710
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
Psp124BI GAGCTC 2 cut(s) 44, 495
Psp6I CCWGG 3 cut(s) 25, 63, 373
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 3 cut(s) 25, 63, 373
PspN4I GGNNCC 3 cut(s) 397, 780, 1076
PspPI GGNCC 2 cut(s) 947, 1063
PstI CTGCAG 1 cut(s) 756
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 3 cut(s) 395, 834, 900
RsaI GTAC 2 cut(s) 314, 1013
RsaNI GTAC 2 cut(s) 313, 1012
RseI CAYNNNNRTG 2 cut(s) 179, 449
SacI GAGCTC 2 cut(s) 44, 495
SaqAI TTAA 5 cut(s) 86, 333, 735, 759, 813
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
Sau96I GGNCC 2 cut(s) 947, 1063
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 4 cut(s) 27, 65, 375, 712
SduI GDGCHC 3 cut(s) 44, 495, 870
SfaNI GCATC 4 cut(s) 14, 69, 618, 790
SfcI CTRYAG 1 cut(s) 752
SfuI TTCGAA 1 cut(s) 120
SinI GGWCC 2 cut(s) 947, 1063
SmiMI CAYNNNNRTG 2 cut(s) 179, 449
SpeI ACTAGT 1 cut(s) 190
SphI GCATGC 1 cut(s) 663
Sse9I AATT 5 cut(s) 326, 646, 929, 942, 1087
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 3 cut(s) 30, 162, 1033
SspMI CTAG 3 cut(s) 45, 191, 548
SstI GAGCTC 2 cut(s) 44, 495
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 4 cut(s) 25, 63, 373, 710
StyI CCWWGG 2 cut(s) 277, 342
TaaI ACNGT 4 cut(s) 81, 740, 987, 1011
TaiI ACGT 4 cut(s) 111, 384, 424, 1017
TaqI TCGA 5 cut(s) 120, 177, 519, 933, 1044
TasI AATT 5 cut(s) 326, 646, 929, 942, 1087
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 3 cut(s) 215, 258, 438
Tru1I TTAA 5 cut(s) 86, 333, 735, 759, 813
Tru9I TTAA 5 cut(s) 86, 333, 735, 759, 813
TscAI CASTG 3 cut(s) 642, 957, 990
TseFI GTSAC 3 cut(s) 377, 422, 952
Tsp45I GTSAC 3 cut(s) 377, 422, 952
TspDTI ATGAA 7 cut(s) 126, 371, 452, 467, 489, 569, 659
TspGWI ACGGA 3 cut(s) 101, 408, 782
TspRI CASTG 3 cut(s) 642, 957, 990
VpaK11BI GGWCC 2 cut(s) 947, 1063
XapI RAATTY 2 cut(s) 326, 929
XceI RCATGY 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 515
XspI CTAG 3 cut(s) 45, 191, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.