pycom05g26880

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0001297
Physical Location & Seq
Forward (+)
28024265 .. 28026943
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g26880.4

Sequence Viewer

Length: 1095 bp
ATGGCATCACTATCGCAGCTCCCAGCAGGCTCTGAAAGCTCTAATTCGCTATTCAGCGTCATAGAGACCGCCAAAGAGCCCTTAACTTCAGTCCCACAATGTTACGTTCGTTTGGAACAAGAACCAACTCCATCTGAACTCTCTGATGATAATAAGGGCACCTTCCGTTCTATCCCTACCATCGACATGACGAAATTAGTTAAGGGAGAAACCTCAGACTTTGCAAATCAACTGGAGAAACTGCACTCAGCTTGCAAAGACTGGGGCATTTTTCAGTTGGTGAACCATGGAGTTAACCCTATGCTGTTAGAGAATCTGGAACATGAGATTGAAGTATTCTTTAAGCTTCCCTTGGAAGAGAAAATGAAATATGCAATGAGGTCAGGTGATTTTGAAGGCTATGGAAACATAGGCAACACCAAAGACCAAAAGCTTGACTGGGGTGATAGGTTATTTATGATAACCAACCCTATTCATCGAAGAAAGCCGTACCTCTTCGCAGAGCTCCCTTCATCCATCAGGAATACCTTGGAGTCATACTTTATGGAATTGGACAAACTTGCCATGAGACTTCTTGGGTTTATGGTTAAAGCTCTGAAGACAGAGATGAGAGAGATAGAGGAGTTGTTCGATAAAGACGGGATGCAATCAGTGAGGATGACATACTATCCTCCATGTCCACAACCAGAGCTGGTTATAGGGATCTCACCTCACTCAGATATATCTGGGATCACCATCCTCAACCAGCTTAATGGAGTTGACGGTCTCCAAATTAAAAAAGACGGGGCTTGGATGCCCGTCAACTTCCAAAAAGATGCCTTTGTGGTGAATGTGGGGGACATCTTTGAGATGCTGAGCAACGGAGTTTACAAAAGCATTGAACACAGGGTAATGGTGAATTCGGAGAAAGAAAGGGTGTCGGTTGCGATGTTCTTCAACCCTAAATTTGAGGCTGAGATTGGGCCACTCAGAAGCTTGATAACCCCAGAAAACCCACCACTGTTCCAAAGGGTTGGGATGGAAAAGTACATCAACGATTTCGTCTCCCGCCGTAGGCTTGATGGAAAATCGTACTTGGAGCAAATGAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

365

Amino Acids

41.57

Weight (kDa)

5.38

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AciI CCGC 2 cut(s) 69, 1048
AclWI GGATC 2 cut(s) 710, 737
AcsI RAATTY 2 cut(s) 898, 944
AcuI CTGAAG 2 cut(s) 72, 617
AfaI GTAC 3 cut(s) 491, 1028, 1073
AfiI CCNNNNNNNGG 1 cut(s) 1053
AgsI TTSAA 4 cut(s) 332, 395, 881, 937
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 4 cut(s) 59, 562, 770, 1048
AlwI GGATC 2 cut(s) 710, 737
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 1 cut(s) 962
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 2 cut(s) 898, 944
AspS9I GGNCC 1 cut(s) 962
AsuHPI GGTGA 7 cut(s) 292, 398, 455, 699, 724, 838, 907
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 2 cut(s) 81, 507
BbsI GAAGAC 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 1 cut(s) 28
BccI CCATC 6 cut(s) 139, 188, 524, 743, 1012, 1055
BceAI ACGGC 2 cut(s) 472, 1035
BcgI CGANNNNNNTGC 1 cut(s) 28
BcoDI GTCTC 4 cut(s) 59, 562, 770, 1048
BisI GCNGC 1 cut(s) 17
BlpI GCTNAGC 1 cut(s) 854
BlsI GCNGC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 962
BmiI GGNNCC 1 cut(s) 160
BmrI ACTGGG 2 cut(s) 271, 448
BmsI GCATC 5 cut(s) 14, 633, 783, 805, 840
BmuI ACTGGG 2 cut(s) 271, 448
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 254
Bpu1102I GCTNAGC 1 cut(s) 854
BsaBI GATNNNNATC 1 cut(s) 734
BsaI GGTCTC 2 cut(s) 59, 770
BsaJI CCNNGG 3 cut(s) 286, 351, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 1053
Bse1I ACTGG 3 cut(s) 237, 266, 443
Bse3DI GCAATG 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 734
BseDI CCNNGG 3 cut(s) 286, 351, 528
BseGI GGATG 6 cut(s) 512, 648, 663, 735, 798, 1023
BseJI GATNNNNATC 1 cut(s) 734
BseLI CCNNNNNNNGG 1 cut(s) 1053
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 6 cut(s) 228, 261, 729, 845, 945, 982
BseNI ACTGG 3 cut(s) 237, 266, 443
BseRI GAGGAG 1 cut(s) 635
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 227
BshFI GGCC 1 cut(s) 964
BshNI GGYRCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 507
BslFI GGGAC 2 cut(s) 77, 851
BslI CCNNNNNNNGG 1 cut(s) 1053
BsmAI GTCTC 4 cut(s) 59, 562, 770, 1048
BsmBI CGTCTC 1 cut(s) 1048
BsmFI GGGAC 2 cut(s) 77, 851
BsnI GGCC 1 cut(s) 964
Bso31I GGTCTC 2 cut(s) 59, 770
Bsp1286I GDGCHC 3 cut(s) 81, 161, 507
Bsp143I GATC 2 cut(s) 702, 729
Bsp1720I GCTNAGC 1 cut(s) 854
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 2 cut(s) 69, 1048
BspANI GGCC 1 cut(s) 964
BspCNI CTCAG 6 cut(s) 227, 260, 728, 846, 946, 981
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 2 cut(s) 710, 737
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 2 cut(s) 59, 770
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 3 cut(s) 237, 266, 443
BssECI CCNNGG 3 cut(s) 286, 351, 528
BssMI GATC 2 cut(s) 702, 729
BssT1I CCWWGG 3 cut(s) 286, 351, 528
Bst4CI ACNGT 2 cut(s) 764, 1002
Bst6I CTCTTC 2 cut(s) 351, 500
BstC8I GCNNGC 2 cut(s) 28, 253
BstDEI CTNAG 6 cut(s) 214, 247, 715, 854, 954, 968
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 6 cut(s) 512, 648, 663, 735, 798, 1023
BstKTI GATC 2 cut(s) 705, 732
BstMAI GTCTC 4 cut(s) 59, 562, 770, 1048
BstMBI GATC 2 cut(s) 702, 729
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 1 cut(s) 702
BstXI CCANNNNNNTGG 2 cut(s) 752, 1013
BstYI RGATCY 1 cut(s) 702
BsuRI GGCC 1 cut(s) 964
BtgI CCRYGG 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 941
BtsCI GGATG 6 cut(s) 512, 648, 663, 735, 798, 1023
BtsIMutI CAGTG 2 cut(s) 657, 998
Cac8I GCNNGC 2 cut(s) 28, 253
CaiI CAGNNNCTG 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 962
CseI GACGC 1 cut(s) 46
Csp6I GTAC 3 cut(s) 490, 1027, 1072
CviAII CATG 5 cut(s) 187, 287, 323, 565, 675
CviQI GTAC 3 cut(s) 490, 1027, 1072
DdeI CTNAG 6 cut(s) 214, 247, 715, 854, 954, 968
DpnI GATC 2 cut(s) 704, 731
DpnII GATC 2 cut(s) 702, 729
Eam1104I CTCTTC 2 cut(s) 351, 500
EarI CTCTTC 2 cut(s) 351, 500
Ecl136II GAGCTC 1 cut(s) 505
Eco130I CCWWGG 3 cut(s) 286, 351, 528
Eco24I GRGCYC 2 cut(s) 81, 507
Eco31I GGTCTC 2 cut(s) 59, 770
Eco53kI GAGCTC 1 cut(s) 505
Eco57I CTGAAG 2 cut(s) 72, 617
EcoICRI GAGCTC 1 cut(s) 505
EcoRI GAATTC 1 cut(s) 898
EcoT14I CCWWGG 3 cut(s) 286, 351, 528
EcoT38I GRGCYC 2 cut(s) 81, 507
ErhI CCWWGG 3 cut(s) 286, 351, 528
Esp3I CGTCTC 1 cut(s) 1048
FaeI CATG 5 cut(s) 190, 290, 326, 568, 678
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 335, 367
FaqI GGGAC 2 cut(s) 77, 851
FatI CATG 5 cut(s) 186, 286, 322, 564, 674
FauI CCCGC 1 cut(s) 1055
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 6 cut(s) 499, 655, 670, 722, 805, 1030
FriOI GRGCYC 2 cut(s) 81, 507
Fsp4HI GCNGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 17
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 1 cut(s) 964
HgaI GACGC 1 cut(s) 46
Hin1II CATG 5 cut(s) 190, 290, 326, 568, 678
HincII GTYRAC 3 cut(s) 295, 760, 802
HindII GTYRAC 3 cut(s) 295, 760, 802
HindIII AAGCTT 3 cut(s) 344, 431, 973
HinfI GANTC 2 cut(s) 313, 533
HpaI GTTAAC 1 cut(s) 295
HphI GGTGA 7 cut(s) 292, 398, 455, 699, 724, 838, 907
Hpy166II GTNNAC 6 cut(s) 283, 295, 680, 760, 802, 868
Hpy188I TCNGA 8 cut(s) 34, 136, 145, 217, 597, 718, 904, 971
Hpy188III TCNNGA 2 cut(s) 317, 520
Hpy8I GTNNAC 6 cut(s) 283, 295, 680, 760, 802, 868
HpyAV CCTTC 3 cut(s) 172, 389, 519
HpyCH4III ACNGT 2 cut(s) 764, 1002
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 5 cut(s) 224, 244, 255, 374, 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 6 cut(s) 214, 247, 715, 854, 954, 968
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 5 cut(s) 190, 290, 326, 568, 678
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 2 cut(s) 702, 729
LmnI GCTCC 3 cut(s) 24, 510, 1078
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 5 cut(s) 14, 633, 783, 805, 840
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 704, 731
MboI GATC 2 cut(s) 702, 729
MboII GAAGA 5 cut(s) 368, 487, 492, 610, 925
MflI RGATCY 1 cut(s) 702
MhlI GDGCHC 3 cut(s) 81, 161, 507
MluCI AATT 6 cut(s) 43, 194, 548, 771, 898, 944
MlyI GAGTC 1 cut(s) 542
MnlI CCTC 9 cut(s) 223, 372, 503, 613, 648, 681, 720, 749, 943
MseI TTAA 7 cut(s) 83, 201, 294, 342, 588, 750, 774
MslI CAYNNNNRTG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 286
NdeII GATC 2 cut(s) 702, 729
NlaIII CATG 5 cut(s) 190, 290, 326, 568, 678
NlaIV GGNNCC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 1 cut(s) 18
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Psp124BI GAGCTC 1 cut(s) 507
PspFI CCCAGC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 962
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 702
RsaI GTAC 3 cut(s) 491, 1028, 1073
RsaNI GTAC 3 cut(s) 490, 1027, 1072
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 7 cut(s) 83, 201, 294, 342, 588, 750, 774
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 2 cut(s) 702, 729
Sau96I GGNCC 1 cut(s) 962
SchI GAGTC 1 cut(s) 542
SduI GDGCHC 3 cut(s) 81, 161, 507
SfaNI GCATC 5 cut(s) 14, 633, 783, 805, 840
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 6 cut(s) 43, 194, 548, 771, 898, 944
SsiI CCGC 2 cut(s) 69, 1048
SstI GAGCTC 1 cut(s) 507
StyI CCWWGG 3 cut(s) 286, 351, 528
TaaI ACNGT 2 cut(s) 764, 1002
TaiI ACGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 183, 478, 630
TasI AATT 6 cut(s) 43, 194, 548, 771, 898, 944
TatI WGTACW 1 cut(s) 1026
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 7 cut(s) 83, 201, 294, 342, 588, 750, 774
Tru9I TTAA 7 cut(s) 83, 201, 294, 342, 588, 750, 774
TscAI CASTG 2 cut(s) 657, 1005
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 3 cut(s) 380, 464, 501
TspGWI ACGGA 2 cut(s) 155, 876
TspRI CASTG 2 cut(s) 657, 1005
XapI RAATTY 2 cut(s) 898, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.