Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

36223449 .. 36225433

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47953.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGTGGAGATGGGTTTTGATTTGAGAGATGTGAAGAAGGCCACATTTGAGGGTGTCATTAGGCTGCTTTGCAGGGATGGGAAGATTCAGGAGGCAAGAGATTTTGTCAAGGAGGCTATGGCTTTTGAAATCAAACCTAGCAACTTGGTTTTAAATGAAGTTGCTTATGGATATTGTGAGAAGAAGGACTTTGATGATTTGATGAGTTTTTATGCTGAGATAAAGTGTGCCCCAGAAGTTGTGGCTGGGAATAGGGTTATGCATTCTCTTTGTAGCCATTTTGGGACAAGAAGAGCAGAACCATATTTGCAAGAGTTGGAACTTTTAGGCTTCAATCCTGATGAGGTAACCTTTGGGATCATGATTGGATGGAGCTATCGTGAACGGAAACTAAAAAATGCTTTTCTTTACCTATCAGAGATGTTGAGAAGACACCTAAACCCCCATGTATGCACCTATAATGCTCTTATCAGTGGGGTCTTTATGGAGGGTATGTGGAAGCATGCTGGGGAAGTCTTTGCTGAGATGGTAGATACGGGGACTACACCTGATTTGTCGACTTTCAGGTTTCTTTTAGCAGGCTATTGTAAAGCTAGACAATTTGATGAAGCCAAAAGGATAGTTTTTGATATGGCAAGCCATGGACTGATTCAACTCTCTTCAGATGAGGATCCACTAACCAAAGCATTTATGGTTCTGGGTTTCAAGCCATTAGCTGTGACACTGAAGAGAGATAATGATGTGGGATTTGCTAAAACGGAGTTTTATGATAATCTTGGGAATGGACTATATTTGGATACAGACCTGGATGAGTACGAGAAAAGAATGACTGGGATCCTAGAAGATTGCATGGTACCCGATTATTACTCTCTTATCAAGAAAGAATGCACTCGGGGAAATTTGAAGGGTGCATTGGTTTCGGCAGATGAAATGATCCGGTGGGGACAAGATTTGTCATTGTCTATGATCTCCGACTTACTGAAAGGGCTTTCTGCATCCTATTCACATACCAAGGAAATCACCAGCATTGTAGATAAAAAGCTTCACTTGGTAAATCAGTCCAACAATCTTGCAAAACTGCCGCATATTATTGTTGCAACACCTGGACGCCTCCTTCATCATTTAACCAAGATAAGAGGATTTTCTCTTGACAGTATTAAATTTCTGCTAGGATTTGATTATTTTGTCAGCTTCAGGGTTTATTTTTTTGTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

406

Amino Acids

46.23

Weight (kDa)

5.94

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	103 - 158	2.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	113 - 159	3.1e-07	PPR repeat family
PPR_2	PF13041	148 - 197	3.2e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	853
AccB1I	GGYRCC	1 cut(s)	853
AccI	GTMKAC	1 cut(s)	557
AciI	CCGC	1 cut(s)	1082
AclWI	GGATC	6 cut(s)	365, 665, 678, 829, 842, 928
AcsI	RAATTY	2 cut(s)	898, 1160
AcuI	CTGAAG	3 cut(s)	645, 746, 1177
AcyI	GRCGYC	1 cut(s)	1108
AfaI	GTAC	2 cut(s)	815, 855
AgsI	TTSAA	5 cut(s)	128, 334, 653, 706, 904
AjnI	CCWGG	2 cut(s)	804, 1102
AjuI	GAANNNNNNNTTGG	2 cut(s)	896, 928
AluBI	AGCT	5 cut(s)	375, 593, 716, 1042, 1191
AluI	AGCT	5 cut(s)	375, 593, 716, 1042, 1191
AlwI	GGATC	6 cut(s)	365, 665, 678, 829, 842, 928
Ama87I	CYCGRG	1 cut(s)	891
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	898, 1160
Asp718I	GGTACC	1 cut(s)	853
AsuHPI	GGTGA	1 cut(s)	1012
AvaI	CYCGRG	1 cut(s)	891
BaeGI	GKGCMC	1 cut(s)	232
BamHI	GGATCC	2 cut(s)	670, 834
BanI	GGYRCC	1 cut(s)	853
BbsI	GAAGAC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	4 cut(s)	4, 71, 363, 520
BcgI	CGANNNNNNTGC	2 cut(s)	900, 934
BciT130I	CCWGG	2 cut(s)	806, 1104
BciVI	GTATCC	1 cut(s)	790
BfaI	CTAG	4 cut(s)	138, 594, 839, 1169
BfuI	GTATCC	1 cut(s)	790
BisI	GCNGC	2 cut(s)	65, 1082
BlsI	GCNGC	2 cut(s)	66, 1083
Bme1390I	CCNGG	2 cut(s)	806, 1104
BmeT110I	CYCGRG	1 cut(s)	891
BmiI	GGNNCC	3 cut(s)	672, 836, 855
BmrFI	CCNGG	2 cut(s)	806, 1104
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	1 cut(s)	1004
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	1108
BsaJI	CCNNGG	2 cut(s)	640, 1011
BsaWI	WCCGGW	1 cut(s)	936
BsaXI	ACNNNNNCTCC	4 cut(s)	364, 394, 479, 509
Bse1I	ACTGG	1 cut(s)	835
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	806, 1104
BseDI	CCNNGG	2 cut(s)	640, 1011
BseGI	GGATG	4 cut(s)	82, 374, 814, 995
BseJI	GATNNNNATC	1 cut(s)	669
BseMII	CTCAG	2 cut(s)	207, 513
BseNI	ACTGG	1 cut(s)	835
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	51
BseYI	CCCAGC	2 cut(s)	245, 506
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	853
BsiHKCI	CYCGRG	1 cut(s)	891
BsiSI	CCGG	1 cut(s)	937
BslFI	GGGAC	3 cut(s)	298, 553, 957
BsmFI	GGGAC	3 cut(s)	298, 553, 957
BsmI	GAATGC	2 cut(s)	262, 890
BsnI	GGCC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	891
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	5 cut(s)	357, 670, 834, 933, 966
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	1 cut(s)	1082
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	208, 514
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	672, 836, 855
BspPI	GGATC	6 cut(s)	365, 665, 678, 829, 842, 928
BspQI	GCTCTTC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	853
BsrI	ACTGG	1 cut(s)	835
BssECI	CCNNGG	2 cut(s)	640, 1011
BssMI	GATC	5 cut(s)	357, 670, 834, 933, 966
BssNI	GRCGYC	1 cut(s)	1108
BssT1I	CCWWGG	2 cut(s)	640, 1011
Bst2UI	CCWGG	2 cut(s)	806, 1104
Bst4CI	ACNGT	1 cut(s)	1154
Bst6I	CTCTTC	3 cut(s)	286, 664, 722
BstACI	GRCGYC	1 cut(s)	1108
BstC8I	GCNNGC	3 cut(s)	504, 580, 637
BstDEI	CTNAG	2 cut(s)	216, 522
BstDSI	CCRYGG	1 cut(s)	640
BstEII	GGTNACC	1 cut(s)	346
BstF5I	GGATG	4 cut(s)	82, 374, 814, 995
BstKTI	GATC	5 cut(s)	360, 673, 837, 936, 969
BstMBI	GATC	5 cut(s)	357, 670, 834, 933, 966
BstNI	CCWGG	2 cut(s)	806, 1104
BstNSI	RCATGY	1 cut(s)	506
BstPI	GGTNACC	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	804, 1102
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	2 cut(s)	670, 834
BstYI	RGATCY	2 cut(s)	670, 834
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	640
BtsCI	GGATG	4 cut(s)	82, 374, 814, 995
BtsIMutI	CAGTG	2 cut(s)	478, 722
Cac8I	GCNNGC	3 cut(s)	504, 580, 637
CciI	TCATGA	1 cut(s)	360
CseI	GACGC	1 cut(s)	1116
Csp6I	GTAC	2 cut(s)	814, 854
CviAII	CATG	5 cut(s)	361, 446, 503, 641, 850
CviQI	GTAC	2 cut(s)	814, 854
DdeI	CTNAG	2 cut(s)	216, 522
DpnI	GATC	5 cut(s)	359, 672, 836, 935, 968
DpnII	GATC	5 cut(s)	357, 670, 834, 933, 966
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	3 cut(s)	286, 664, 722
EarI	CTCTTC	3 cut(s)	286, 664, 722
Eco130I	CCWWGG	2 cut(s)	640, 1011
Eco57I	CTGAAG	3 cut(s)	645, 746, 1177
Eco88I	CYCGRG	1 cut(s)	891
Eco91I	GGTNACC	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	804, 1102
EcoT14I	CCWWGG	2 cut(s)	640, 1011
EcoT22I	ATGCAT	1 cut(s)	264
ErhI	CCWWGG	2 cut(s)	640, 1011
FaeI	CATG	5 cut(s)	364, 449, 506, 644, 853
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 1031, 1063
FaqI	GGGAC	3 cut(s)	298, 553, 957
FatI	CATG	5 cut(s)	360, 445, 502, 640, 849
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	2 cut(s)	65, 1082
FokI	GGATG	4 cut(s)	89, 381, 821, 982
Fsp4HI	GCNGC	2 cut(s)	65, 1082
FspBI	CTAG	4 cut(s)	138, 594, 839, 1169
GluI	GCNGC	2 cut(s)	65, 1082
GsaI	CCCAGC	2 cut(s)	249, 510
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	937
HgaI	GACGC	1 cut(s)	1116
Hin1I	GRCGYC	1 cut(s)	1108
Hin1II	CATG	5 cut(s)	364, 449, 506, 644, 853
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HindIII	AAGCTT	1 cut(s)	1040
HinfI	GANTC	2 cut(s)	85, 649
HpaII	CCGG	1 cut(s)	937
HphI	GGTGA	1 cut(s)	1012
Hpy166II	GTNNAC	2 cut(s)	383, 558
Hpy188I	TCNGA	3 cut(s)	418, 664, 973
Hpy188III	TCNNGA	6 cut(s)	89, 338, 361, 380, 877, 1148
Hpy8I	GTNNAC	2 cut(s)	383, 558
HpyAV	CCTTC	4 cut(s)	31, 178, 898, 1124
HpyCH4III	ACNGT	1 cut(s)	1154
HpyF3I	CTNAG	2 cut(s)	216, 522
Hsp92I	GRCGYC	1 cut(s)	1108
Hsp92II	CATG	5 cut(s)	364, 449, 506, 644, 853
KpnI	GGTACC	1 cut(s)	857
Kzo9I	GATC	5 cut(s)	357, 670, 834, 933, 966
LguI	GCTCTTC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	372
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	1004
MaeI	CTAG	4 cut(s)	138, 594, 839, 1169
MaeIII	GTNAC	2 cut(s)	346, 718
MalI	GATC	5 cut(s)	359, 672, 836, 935, 968
MboI	GATC	5 cut(s)	357, 670, 834, 933, 966
MboII	GAAGA	8 cut(s)	46, 94, 193, 303, 441, 651, 739, 854
MflI	RGATCY	2 cut(s)	670, 834
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	3 cut(s)	599, 898, 1160
MmeI	TCCRAC	3 cut(s)	297, 996, 1086
MnlI	CCTC	8 cut(s)	43, 85, 106, 337, 481, 661, 1121, 1130
Mph1103I	ATGCAT	1 cut(s)	264
MseI	TTAA	3 cut(s)	152, 1124, 1158
MspI	CCGG	1 cut(s)	937
MspR9I	CCNGG	2 cut(s)	806, 1104
Mva1269I	GAATGC	2 cut(s)	262, 890
MvaI	CCWGG	2 cut(s)	806, 1104
NcoI	CCATGG	1 cut(s)	640
NdeII	GATC	5 cut(s)	357, 670, 834, 933, 966
NlaIII	CATG	5 cut(s)	364, 449, 506, 644, 853
NlaIV	GGNNCC	3 cut(s)	672, 836, 855
NmuCI	GTSAC	1 cut(s)	718
NsiI	ATGCAT	1 cut(s)	264
NspI	RCATGY	1 cut(s)	506
PaeI	GCATGC	1 cut(s)	506
PagI	TCATGA	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	286
PctI	GAATGC	2 cut(s)	262, 890
PfeI	GAWTC	2 cut(s)	85, 649
PkrI	GCNGC	2 cut(s)	66, 1083
Psp6I	CCWGG	2 cut(s)	804, 1102
PspEI	GGTNACC	1 cut(s)	346
PspFI	CCCAGC	2 cut(s)	245, 506
PspGI	CCWGG	2 cut(s)	804, 1102
PspN4I	GGNNCC	3 cut(s)	672, 836, 855
PsuI	RGATCY	2 cut(s)	670, 834
RsaI	GTAC	2 cut(s)	815, 855
RsaNI	GTAC	2 cut(s)	814, 854
SalI	GTCGAC	1 cut(s)	556
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	152, 1124, 1158
SatI	GCNGC	2 cut(s)	65, 1082
Sau3AI	GATC	5 cut(s)	357, 670, 834, 933, 966
ScrFI	CCNGG	2 cut(s)	806, 1104
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	1004
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	3 cut(s)	599, 898, 1160
SsiI	CCGC	1 cut(s)	1082
SspMI	CTAG	4 cut(s)	138, 594, 839, 1169
StyD4I	CCNGG	2 cut(s)	804, 1102
StyI	CCWWGG	2 cut(s)	640, 1011
TaaI	ACNGT	1 cut(s)	1154
TaqI	TCGA	1 cut(s)	557
TasI	AATT	3 cut(s)	599, 898, 1160
TauI	GCSGC	1 cut(s)	1084
TfiI	GAWTC	2 cut(s)	85, 649
Tru1I	TTAA	3 cut(s)	152, 1124, 1158
Tru9I	TTAA	3 cut(s)	152, 1124, 1158
TscAI	CASTG	2 cut(s)	478, 729
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	4 cut(s)	171, 621, 942, 1106
TspGWI	ACGGA	2 cut(s)	400, 773
TspRI	CASTG	2 cut(s)	478, 729
XapI	RAATTY	2 cut(s)	898, 1160
XceI	RCATGY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XmiI	GTMKAC	1 cut(s)	557
XspI	CTAG	4 cut(s)	138, 594, 839, 1169
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.