Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

82793695 .. 82797713

Gene Structure 4019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG597900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3810 bp

ATGAGACAAAGCACCACCTCCACCATAGCTCTATGCAATGAGATGCTTCAAGTTTTGTGTACCTGTTCACCCCACAAGCCTCACATCAAACAGGTTGGTTCTCTTCACTCTCTGTTCTCGCTCTCCACCAATAACCACCGCCTCTCAACTACCACTTCTTCATCCCCAATTCCCCATCATCTTCAACAACACACAAAAACCAACACCCAAGTAGATTTATCTCCTAATTGTTTCAATGGTATAGCCCAATCTGTTATATTGAGGTGTTCCCAATATTTTGACAAGAGTAAGGGCAAAGACTTTGCCAATGCTTCTCTAAAAGACCTTCTTTTGGAGATTTCTGATTTAGTGCCTGAACAAACTCGTAGGCTTAGGCGGGTTTCGGAGCCGAAACCCGAAGATGTGCTTGAATTATTACTGGGTTTTGAATTGCAGTGTGCGCAAGTTGGATTTGAAGCTAGAAAGGTTGAGTCTTTGTGGGGAATTTTCAAGTGGGTTAGTGAAAAAGTTGAGGGCTTTAAGTATAAACCTCAGTCATGTGAGGTCATGGCCTCGTTGCTTCTCCGAGTGGGACTGCTTAGAGAAGTTGAGTTCTTGCTTTCCACAATGGAAAGTCAAGGAGTTTTGTTGGATAGTCAAGAAATTTACAGTGATTTGATTAAAGGGTATGTTGGTGTTGGTGAGTTAGATAGGGCCATTTCTGTCTATGATCGAATTACGGGGCGTGTAGTGCCATCATTGCAGTGTTGTTGTGTTCTACTTGATCAATTGGTGGGAATGAGGAAGACCCAATTGGCGTTTCGAGTTTGTTGTGATATGGCGGAAATGGGTTTTGATTTGAGAGATGTGAAGAAGGCCACATTTGAGGGTCTCATTAGACTGCTTTGCAGGGATGGAAAGATTCAGGAGGCAAGAAATTTTGTCAAGAAGGCTATGGCTTTCGAACTCAAGCCTAGCAACTTAGTTTTAAATGAAGTTGCTTATGGATATTGTGAGAAGAAGGACTTTGATGATTTGATGAGCTTCTATTCTGAGATTAAGTGTGCCCCAGAAGTTATGGCTGGGAATAGGATTATGCATTCTCTTTGTAGCCATTTTGGGACAAGAAGAGCAGAACCTTATTTGCAAGAATTAGAAATTTTAGGCTTCAATCCTGATGAGGTAACCTTTGGAATCATGATTGGCTGGAGCTGTCGTGAACGAAAACTTAAAAGTGCCTTTGTTTACCTATCAGAGATGTTGGGAAGACACCTAAACCCCCATATATGCACCTATAATGCTCTTATCAGCGGGGTATTTATGGAGGGTATGTGGAAGCACGCTGGGAAGGTGTTTGATGAGATGGTAGAGAGGGGGACTACACCTGATTTGTCGACTTTCAGGATTCTCTTAGCAGGCTATTGTAAAGTCAGAAAATTTGATGAAGCCAAAAGGATAGTTTTTGATATGGCAAGCCTTGGACTGATTCAAAACTCTTCAGATGAGGATCCGCTATCCAAAGCATTTATGGTTCTGGGTTTCAAGCCATTAGCTGTGACATTGAAGAGAGATAATGATGTTGGGTTTGCTAAAACAGAGTTTTATGATGATCTTGGGAATGGACTTTATTTGGATACAGACCTGGATAAGTATGAGAAAAGAGTCACTGGGATCCTAGAAGATTGCATGGTACCTGATTATTACTCTCTTATGATGATAGAATGCAGTCGTGGAAATTTGAAGGGTGCTTTGGTTTTGGCAGATGAAATGATTCGGTGGGGACAAGATTTGTCATTGTCTATGATGTCCGACTTACTGAAAGGGCTTTCTGCATCCCATTTACATACCAAGGGTATCACCAGCATTGTAGATAAAAAGCTTCACTTGGTAAATCAGCTAGACCAAGAAACTCTAAACTTTCTTGCCCAAGCATACGGCAAGAAAGGATTGACATATAATACAAGGATAGTGGTGAATGGAATGATAGAAAGGCATCTGAAAATCAACAATGAGACTTACACTGCTTTAGTAAAAGGTTTTTGTAAGAAAGGAAACTTGAGGGAGCTGAATGCTTGCTGGAATATTGCTCAAAGTGACGGATGGTTACCAGGGCCGGAAGATTGTAAAGCCTTGATTGAATGTCTTTTCCATAAAGAAATGCTAAGAAAAGCAGTGCAGCTTCTTGAAAGCATTCTGATATCCTACCCAGACTTAAGGTCAGATATGTGTCATATGATCCTTGACAAGCTTTTTGTTACCGGTTGTACAGGAATTGCAAGCATATTGTTAGAAGAACTTGAACAGCGTGGTGGCATCCTGGATCAGATGGCTTATAACAATATTATTAGAGGATTGTGTAAGGGCAAGAATTTTCATGTGGCCTTTACAGTGCTGGACAGTATGCTGGCTAAAAATTTGGCCCCTTGTTTGGATGTTACTGTCCAATTAATTCCTCAGTTGTGTAGGGCTGATAGATTTGGAAAAGCAGTTAACTTGAAAGAGATTGGTCTAAGAGAGAACTCTTCCTATTCACTTTCTCTAGATCGTGCATTGATAAAAGGCTGTTGTATTTCAGGGAAAGTTACAGAAGCAACCACTCTACTACAGAATCTGTTGTTAAAGCGGATACCTCCTGATGCTGAAATTTACAATTTTCTGGTTCAGGGTCATTGCAAGGTTAATGACTTAAAGAAAGTTTGGGAGCTACTTTGTGTCATGACAAGAAAAGGTTTCAACATTTCACTCTCAACTTACCGCAACTTGGTGTGTTTGATGTGTCTGGAAGGTAGGGTTCTTCATGCATGGAAATTGACTGAGCTTATGATTGGACAAAGTGATCCTCATGATCTCAGCATCTACAATATTTTGATATTCTATATTTTCCCAACCGGGAATACTTTGCTTGTCAAGAAAGTTGTGGAGCATTTGCAAGAGAAGAAATTGCTACTTGATGAAGTAACTTACAACTTTCTTGTACTTGGGTTTTGTAGATCTAAAGATGTGTCGAGTGCTGTGGATCATCTGTACACTATGATCTCTAAGGATTTCAGGCCAAGCAACCGCAACTTGAGAAAAGTTATAACCAGCCTGTGTGATGTTGGGGAGATTGAGAAAGCCTTGGAACTGAGTCGAGAAATGGAATTGAGAGGCCAGATTCATGATTCAATGATTCAAAATGCGATTGTTGAGGGTCTTTCTTCTCGTGGTAGGATTCAAGAAGCTGAAAGTTTTCTGGACAGGATGGTAGAGAAATGTCTAATTCCAGAAAATGTCAACTATAATAATCTAATCAAACTGTTTTGCTCGTATGGAAGACCAAACAAGGCAGTTAATTCTCTGAACATAATGCTGAAGAAAGAGAATGTTCCAGATTCTACCAGTTTTGATTCCATCATCAGCTCTTTCTGTGCCCTTGGTAATCTGGAGCAAGCTATGGATTTTCATGCTGAGATGTTGGATAGAAATCTTAAGCCAAGCATCGACACTTGGGACATTCTGGTCCATAACTTTTGTCAAGATGGAAAAACAGCAGAGGCAGAAAGACTATTGAAGTCTATGGGTTGTGCAGGTGAAACAGTGACCAGGAAGATATATCTGTCTGTAATTAATAGTTATCGCTCAGAGAACAATCTCGGAAAGGTCTCGGAGCTCATGCAAGCAATGCAACAGAGTGGTTATGAGCCAGACTTCGAGACACATTGGTCTCTCATAAGGAACCTAAGAGTTTCTAGTGACAAGGACAATGCAAACAGTAGCAATGGTTTCCTGTCAAAGCTTCTCTCTGCAAGTGGATTTTCTAGGCAAAAGTATTCCAAGGCTAAACAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

1269

Amino Acids

143.35

Weight (kDa)

7.41

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	375 - 430	7.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	420 - 469	3.4e-14	PPR repeat family
PPR_2	PF13041	871 - 919	1.9e-07	PPR repeat family
TPR_24	PF23276	957 - 1068	1.7e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	1082 - 1129	5e-08	PPR repeat family
PPR_2	PF13041	1116 - 1165	2.7e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2313, 3059
AarI	CACCTGC	1 cut(s)	3536
AasI	GACNNNNNNGTC	2 cut(s)	3476, 3679
Acc16I	TGCGCA	1 cut(s)	441
Acc36I	ACCTGC	1 cut(s)	3536
Acc65I	GGTACC	1 cut(s)	1669
AccB1I	GGYRCC	1 cut(s)	1669
AccI	GTMKAC	1 cut(s)	1373
AciI	CCGC	8 cut(s)	139, 376, 821, 1290, 1490, 2602, 2734, 3040
AclWI	GGATC	8 cut(s)	1481, 1494, 1645, 1658, 2209, 2307, 2810, 3003
AcsI	RAATTY	9 cut(s)	483, 642, 916, 1137, 1415, 1714, 2347, 2392, 2622
AcuI	CTGAAG	2 cut(s)	1461, 3350
AfaI	GTAC	5 cut(s)	61, 1671, 2245, 2955, 3005
AfiI	CCNNNNNNNGG	3 cut(s)	331, 2407, 2740
AflII	CTTAAG	2 cut(s)	2191, 3446
AgeI	ACCGGT	1 cut(s)	2237
AhdI	GACNNNNNGTC	1 cut(s)	2194
AjnI	CCWGG	4 cut(s)	1620, 2086, 2295, 3560
AjuI	GAANNNNNNNTTGG	6 cut(s)	776, 783, 808, 815, 1712, 1744
Alw21I	GWGCWC	1 cut(s)	3630
Alw26I	GTCTC	5 cut(s)	875, 1985, 3625, 3665, 3687
AlwI	GGATC	8 cut(s)	1481, 1494, 1645, 1658, 2209, 2307, 2810, 3003
AlwNI	CAGNNNCTG	1 cut(s)	2590
AoxI	GGCC	8 cut(s)	549, 693, 855, 2090, 2358, 2397, 3029, 3127
ApeKI	GCWGC	1 cut(s)	2155
ApoI	RAATTY	9 cut(s)	483, 642, 916, 1137, 1415, 1714, 2347, 2392, 2622
ArsI	GACNNNNNNTTYG	2 cut(s)	2213, 2245
AseI	ATTAAT	2 cut(s)	2426, 3585
AsiGI	ACCGGT	1 cut(s)	2237
Asp700I	GAANNNNTTC	3 cut(s)	1749, 2169, 3207
Asp718I	GGTACC	1 cut(s)	1669
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	4 cut(s)	693, 2090, 2398, 3478
AsuC2I	CCSGG	1 cut(s)	2869
AsuHPI	GGTGA	5 cut(s)	60, 692, 1828, 1963, 3560
AsuII	TTCGAA	1 cut(s)	942
AvaII	GGWCC	1 cut(s)	3478
BaeGI	GKGCMC	2 cut(s)	1048, 3391
BamHI	GGATCC	2 cut(s)	1486, 1650
BanI	GGYRCC	1 cut(s)	1669
BanII	GRGCYC	1 cut(s)	3630
BauI	CACGAG	1 cut(s)	3180
BbsI	GAAGAC	3 cut(s)	791, 1252, 3298
Bbv12I	GWGCWC	1 cut(s)	3630
BbvI	GCAGC	1 cut(s)	2167
BccI	CCATC	9 cut(s)	183, 742, 887, 1336, 2073, 2299, 3214, 3377, 3491
BceAI	ACGGC	1 cut(s)	1930
BciT130I	CCWGG	4 cut(s)	1622, 2088, 2297, 3562
BciVI	GTATCC	2 cut(s)	1606, 2598
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	1 cut(s)	2869
BcoDI	GTCTC	5 cut(s)	875, 1985, 3625, 3665, 3687
BfaI	CTAG	7 cut(s)	459, 954, 1655, 1877, 2519, 3708, 3777
BfmI	CTRYAG	1 cut(s)	2582
BfrI	CTTAAG	2 cut(s)	2191, 3446
BfuAI	ACCTGC	1 cut(s)	3536
BfuI	GTATCC	2 cut(s)	1606, 2598
BglII	AGATCT	1 cut(s)	2969
BisI	GCNGC	1 cut(s)	2156
BlsI	GCNGC	1 cut(s)	2157
Bme1390I	CCNGG	5 cut(s)	1622, 2088, 2297, 2869, 3562
Bme18I	GGWCC	1 cut(s)	3478
BmeRI	GACNNNNNGTC	1 cut(s)	2194
BmgT120I	GGNCC	4 cut(s)	693, 2090, 2398, 3478
BmiI	GGNNCC	6 cut(s)	387, 1488, 1652, 1671, 2400, 3695
BmrFI	CCNGG	5 cut(s)	1622, 2088, 2297, 2869, 3562
BmrI	ACTGGG	2 cut(s)	428, 1656
BmsI	GCATC	7 cut(s)	33, 1820, 1981, 2301, 2605, 2841, 3465
BmuI	ACTGGG	2 cut(s)	428, 1656
BpiI	GAAGAC	3 cut(s)	791, 1252, 3298
BpmI	CTGGAG	2 cut(s)	1207, 3422
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	942
BpuEI	CTTGAG	3 cut(s)	932, 2056, 3067
BpuMI	CCSGG	1 cut(s)	2869
BsaBI	GATNNNNATC	2 cut(s)	1485, 3441
BsaI	GGTCTC	3 cut(s)	875, 3625, 3687
BsaJI	CCNNGG	6 cut(s)	1456, 1827, 2087, 3096, 3391, 3792
BsaWI	WCCGGW	1 cut(s)	2237
BsaXI	ACNNNNNCTCC	4 cut(s)	1180, 1210, 1295, 1325
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 2407, 2740
Bse118I	RCCGGY	1 cut(s)	2237
Bse1I	ACTGG	3 cut(s)	423, 1651, 3357
Bse3DI	GCAATG	5 cut(s)	43, 737, 2647, 3645, 3742
Bse8I	GATNNNNATC	2 cut(s)	1485, 3441
BseBI	CCWGG	4 cut(s)	1622, 2088, 2297, 3562
BseDI	CCNNGG	6 cut(s)	1456, 1827, 2087, 3096, 3391, 3792
BseGI	GGATG	7 cut(s)	161, 898, 1811, 2084, 2292, 2416, 3225
BseJI	GATNNNNATC	2 cut(s)	1485, 3441
BseLI	CCNNNNNNNGG	3 cut(s)	331, 2407, 2740
BseMI	GCAATG	5 cut(s)	43, 737, 2647, 3645, 3742
BseMII	CTCAG	8 cut(s)	545, 1023, 2447, 2784, 2842, 3095, 3417, 3612
BseNI	ACTGG	3 cut(s)	423, 1651, 3357
BseSI	GKGCMC	2 cut(s)	1048, 3391
BseXI	GCAGC	1 cut(s)	2167
BseYI	CCCAGC	2 cut(s)	1061, 1322
BsgI	GTGCAG	2 cut(s)	2174, 3564
BshFI	GGCC	8 cut(s)	551, 695, 857, 2092, 2360, 2399, 3031, 3129
BshNI	GGYRCC	1 cut(s)	1669
BshTI	ACCGGT	1 cut(s)	2237
BsiHKAI	GWGCWC	1 cut(s)	3630
BsiSI	CCGG	3 cut(s)	2093, 2238, 2868
BslFI	GGGAC	5 cut(s)	585, 1114, 1369, 1773, 3482
BslI	CCNNNNNNNGG	3 cut(s)	331, 2407, 2740
BsmAI	GTCTC	5 cut(s)	875, 1985, 3625, 3665, 3687
BsmFI	GGGAC	5 cut(s)	585, 1114, 1369, 1773, 3482
BsmI	GAATGC	4 cut(s)	1078, 1706, 2053, 2169
BsnI	GGCC	8 cut(s)	551, 695, 857, 2092, 2360, 2399, 3031, 3129
Bso31I	GGTCTC	3 cut(s)	875, 3625, 3687
Bsp119I	TTCGAA	1 cut(s)	942
Bsp1286I	GDGCHC	3 cut(s)	1048, 3391, 3630
Bsp1407I	TGTACA	2 cut(s)	2243, 3003
BspACI	CCGC	8 cut(s)	139, 376, 821, 1290, 1490, 2602, 2734, 3040
BspANI	GGCC	8 cut(s)	551, 695, 857, 2092, 2360, 2399, 3031, 3129
BspCNI	CTCAG	8 cut(s)	544, 1024, 2446, 2785, 2841, 3096, 3418, 3611
BspHI	TCATGA	4 cut(s)	1176, 2694, 2821, 3136
BspLI	GGNNCC	6 cut(s)	387, 1488, 1652, 1671, 2400, 3695
BspMI	ACCTGC	1 cut(s)	3536
BspPI	GGATC	8 cut(s)	1481, 1494, 1645, 1658, 2209, 2307, 2810, 3003
BspQI	GCTCTTC	1 cut(s)	1102
BspT104I	TTCGAA	1 cut(s)	942
BspT107I	GGYRCC	1 cut(s)	1669
BspTI	CTTAAG	2 cut(s)	2191, 3446
BspTNI	GGTCTC	3 cut(s)	875, 3625, 3687
BsrDI	GCAATG	5 cut(s)	43, 737, 2647, 3645, 3742
BsrFI	RCCGGY	1 cut(s)	2237
BsrGI	TGTACA	2 cut(s)	2243, 3003
BsrI	ACTGG	3 cut(s)	423, 1651, 3357
BssAI	RCCGGY	1 cut(s)	2237
BssECI	CCNNGG	6 cut(s)	1456, 1827, 2087, 3096, 3391, 3792
BssSI	CACGAG	1 cut(s)	3180
BssT1I	CCWWGG	5 cut(s)	1456, 1827, 3096, 3391, 3792
Bst2BI	CACGAG	1 cut(s)	3180
Bst2UI	CCWGG	4 cut(s)	1622, 2088, 2297, 3562
Bst4CI	ACNGT	7 cut(s)	650, 2368, 2378, 2419, 3276, 3556, 3731
Bst6I	CTCTTC	5 cut(s)	108, 1102, 1480, 1538, 2506
BstAFI	CTTAAG	2 cut(s)	2191, 3446
BstAPI	GCANNNNNTGC	1 cut(s)	3640
BstAUI	TGTACA	2 cut(s)	2243, 3003
BstBI	TTCGAA	1 cut(s)	942
BstC8I	GCNNGC	8 cut(s)	1320, 1396, 1453, 2053, 2257, 2385, 3408, 3636
BstEII	GGTNACC	2 cut(s)	1162, 2082
BstF5I	GGATG	7 cut(s)	161, 898, 1811, 2084, 2292, 2416, 3225
BstHHI	GCGC	1 cut(s)	442
BstMAI	GTCTC	5 cut(s)	875, 1985, 3625, 3665, 3687
BstMWI	GCNNNNNNNGC	4 cut(s)	439, 730, 739, 3640
BstNI	CCWGG	4 cut(s)	1622, 2088, 2297, 3562
BstPI	GGTNACC	2 cut(s)	1162, 2082
BstSCI	CCNGG	5 cut(s)	1620, 2086, 2295, 2867, 3560
BstSFI	CTRYAG	1 cut(s)	2582
BstSLI	GKGCMC	2 cut(s)	1048, 3391
BstV1I	GCAGC	1 cut(s)	2167
BstV2I	GAAGAC	3 cut(s)	791, 1252, 3298
BstX2I	RGATCY	3 cut(s)	1486, 1650, 2969
BstYI	RGATCY	3 cut(s)	1486, 1650, 2969
BsuI	GTATCC	2 cut(s)	1606, 2598
BsuRI	GGCC	8 cut(s)	551, 695, 857, 2092, 2360, 2399, 3031, 3129
BtsCI	GGATG	7 cut(s)	161, 898, 1811, 2084, 2292, 2416, 3225
BtsI	GCAGTG	4 cut(s)	440, 749, 1998, 2157
BtsIMutI	CAGTG	8 cut(s)	440, 655, 749, 1644, 1998, 2157, 2373, 3561
BveI	ACCTGC	1 cut(s)	3536
Cac8I	GCNNGC	8 cut(s)	1320, 1396, 1453, 2053, 2257, 2385, 3408, 3636
CaiI	CAGNNNCTG	1 cut(s)	2590
CciI	TCATGA	4 cut(s)	1176, 2694, 2821, 3136
CfoI	GCGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	2237
Cfr13I	GGNCC	4 cut(s)	693, 2090, 2398, 3478
Csp6I	GTAC	5 cut(s)	60, 1670, 2244, 2954, 3004
CspAI	ACCGGT	1 cut(s)	2237
CspCI	CAANNNNNGTGG	2 cut(s)	1929, 1964
CviQI	GTAC	5 cut(s)	60, 1670, 2244, 2954, 3004
DraI	TTTAAA	1 cut(s)	969
DrdI	GACNNNNNNGTC	2 cut(s)	3476, 3679
DriI	GACNNNNNGTC	1 cut(s)	2194
DseDI	GACNNNNNNGTC	2 cut(s)	3476, 3679
Eam1104I	CTCTTC	5 cut(s)	108, 1102, 1480, 1538, 2506
Eam1105I	GACNNNNNGTC	1 cut(s)	2194
EarI	CTCTTC	5 cut(s)	108, 1102, 1480, 1538, 2506
EciI	GGCGGA	1 cut(s)	836
Ecl136II	GAGCTC	1 cut(s)	3628
Eco130I	CCWWGG	5 cut(s)	1456, 1827, 3096, 3391, 3792
Eco24I	GRGCYC	1 cut(s)	3630
Eco31I	GGTCTC	3 cut(s)	875, 3625, 3687
Eco32I	GATATC	1 cut(s)	2178
Eco47I	GGWCC	1 cut(s)	3478
Eco53kI	GAGCTC	1 cut(s)	3628
Eco57I	CTGAAG	2 cut(s)	1461, 3350
Eco91I	GGTNACC	2 cut(s)	1162, 2082
EcoICRI	GAGCTC	1 cut(s)	3628
EcoO65I	GGTNACC	2 cut(s)	1162, 2082
EcoRII	CCWGG	4 cut(s)	1620, 2086, 2295, 3560
EcoRV	GATATC	1 cut(s)	2178
EcoT14I	CCWWGG	5 cut(s)	1456, 1827, 3096, 3391, 3792
EcoT22I	ATGCAT	2 cut(s)	1080, 2782
EcoT38I	GRGCYC	1 cut(s)	3630
ErhI	CCWWGG	5 cut(s)	1456, 1827, 3096, 3391, 3792
FalI	AAGNNNNNCTT	8 cut(s)	312, 344, 390, 422, 989, 1021, 1847, 1879
FaqI	GGGAC	5 cut(s)	585, 1114, 1369, 1773, 3482
FauI	CCCGC	2 cut(s)	369, 1283
FauNDI	CATATG	1 cut(s)	2211
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	1373
Fnu4HI	GCNGC	1 cut(s)	2156
FokI	GGATG	7 cut(s)	148, 905, 1798, 2091, 2279, 2423, 3232
FriOI	GRGCYC	1 cut(s)	3630
Fsp4HI	GCNGC	1 cut(s)	2156
FspBI	CTAG	7 cut(s)	459, 954, 1655, 1877, 2519, 3708, 3777
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	1 cut(s)	2156
GsaI	CCCAGC	2 cut(s)	1065, 1326
GsuI	CTGGAG	2 cut(s)	1207, 3422
HaeIII	GGCC	8 cut(s)	551, 695, 857, 2092, 2360, 2399, 3031, 3129
HapII	CCGG	3 cut(s)	2093, 2238, 2868
HhaI	GCGC	1 cut(s)	442
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HincII	GTYRAC	3 cut(s)	1374, 2470, 3253
HindII	GTYRAC	3 cut(s)	1374, 2470, 3253
HindIII	AAGCTT	3 cut(s)	1856, 2225, 3752
HpaI	GTTAAC	1 cut(s)	2470
HpaII	CCGG	3 cut(s)	2093, 2238, 2868
HphI	GGTGA	5 cut(s)	60, 692, 1828, 1963, 3560
Hpy166II	GTNNAC	8 cut(s)	60, 68, 1199, 1225, 1374, 2470, 3006, 3253
Hpy8I	GTNNAC	8 cut(s)	60, 68, 1199, 1225, 1374, 2470, 3006, 3253
HpyAV	CCTTC	7 cut(s)	335, 847, 922, 994, 1321, 1714, 2756
HpyCH4III	ACNGT	7 cut(s)	650, 2368, 2378, 2419, 3276, 3556, 3731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	439, 730, 739, 3640
HspAI	GCGC	1 cut(s)	440
KpnI	GGTACC	1 cut(s)	1673
Ksp22I	TGATCA	1 cut(s)	763
KspAI	GTTAAC	1 cut(s)	2470
LguI	GCTCTTC	1 cut(s)	1102
LmnI	GCTCC	7 cut(s)	385, 1188, 2041, 2680, 2899, 3403, 3625
Lsp1109I	GCAGC	1 cut(s)	2167
LweI	GCATC	7 cut(s)	33, 1820, 1981, 2301, 2605, 2841, 3465
MaeI	CTAG	7 cut(s)	459, 954, 1655, 1877, 2519, 3708, 3777
MfeI	CAATTG	2 cut(s)	767, 791
MflI	RGATCY	3 cut(s)	1486, 1650, 2969
MhlI	GDGCHC	3 cut(s)	1048, 3391, 3630
MlyI	GAGTC	3 cut(s)	479, 1650, 3115
MmeI	TCCRAC	4 cut(s)	427, 609, 1812, 3414
Mph1103I	ATGCAT	2 cut(s)	1080, 2782
MroXI	GAANNNNTTC	3 cut(s)	1749, 2169, 3207
MslI	CAYNNNNRTG	1 cut(s)	742
MspA1I	CMGCKG	1 cut(s)	1290
MspCI	CTTAAG	2 cut(s)	2191, 3446
MspI	CCGG	3 cut(s)	2093, 2238, 2868
MspR9I	CCNGG	5 cut(s)	1622, 2088, 2297, 2869, 3562
MunI	CAATTG	2 cut(s)	767, 791
Mva1269I	GAATGC	4 cut(s)	1078, 1706, 2053, 2169
MvaI	CCWGG	4 cut(s)	1622, 2088, 2297, 3562
MwoI	GCNNNNNNNGC	4 cut(s)	439, 730, 739, 3640
NciI	CCSGG	1 cut(s)	2869
NdeI	CATATG	1 cut(s)	2211
NlaIV	GGNNCC	6 cut(s)	387, 1488, 1652, 1671, 2400, 3695
NmuCI	GTSAC	5 cut(s)	1534, 1642, 2072, 3556, 3710
NsbI	TGCGCA	1 cut(s)	441
NsiI	ATGCAT	2 cut(s)	1080, 2782
NspV	TTCGAA	1 cut(s)	942
PagI	TCATGA	4 cut(s)	1176, 2694, 2821, 3136
PaqCI	CACCTGC	1 cut(s)	3536
PciSI	GCTCTTC	1 cut(s)	1102
PctI	GAATGC	4 cut(s)	1078, 1706, 2053, 2169
PdmI	GAANNNNTTC	3 cut(s)	1749, 2169, 3207
PfoI	TCCNGGA	1 cut(s)	2295
PinAI	ACCGGT	1 cut(s)	2237
PkrI	GCNGC	1 cut(s)	2157
PleI	GAGTC	3 cut(s)	478, 1649, 3114
PpsI	GAGTC	3 cut(s)	478, 1649, 3114
PshBI	ATTAAT	2 cut(s)	2426, 3585
PsiI	TTATAA	2 cut(s)	2313, 3059
Psp124BI	GAGCTC	1 cut(s)	3630
Psp6I	CCWGG	4 cut(s)	1620, 2086, 2295, 3560
PspEI	GGTNACC	2 cut(s)	1162, 2082
PspFI	CCCAGC	2 cut(s)	1061, 1322
PspGI	CCWGG	4 cut(s)	1620, 2086, 2295, 3560
PspN4I	GGNNCC	6 cut(s)	387, 1488, 1652, 1671, 2400, 3695
PspPI	GGNCC	4 cut(s)	693, 2090, 2398, 3478
PstNI	CAGNNNCTG	1 cut(s)	2590
PsuI	RGATCY	3 cut(s)	1486, 1650, 2969
RsaI	GTAC	5 cut(s)	61, 1671, 2245, 2955, 3005
RsaNI	GTAC	5 cut(s)	60, 1670, 2244, 2954, 3004
RseI	CAYNNNNRTG	1 cut(s)	742
SacI	GAGCTC	1 cut(s)	3630
SalI	GTCGAC	1 cut(s)	1372
SapI	GCTCTTC	1 cut(s)	1102
SatI	GCNGC	1 cut(s)	2156
Sau96I	GGNCC	4 cut(s)	693, 2090, 2398, 3478
SchI	GAGTC	3 cut(s)	479, 1650, 3115
ScrFI	CCNGG	5 cut(s)	1622, 2088, 2297, 2869, 3562
SduI	GDGCHC	3 cut(s)	1048, 3391, 3630
SfaNI	GCATC	7 cut(s)	33, 1820, 1981, 2301, 2605, 2841, 3465
SfcI	CTRYAG	1 cut(s)	2582
SfuI	TTCGAA	1 cut(s)	942
SinI	GGWCC	1 cut(s)	3478
SmiMI	CAYNNNNRTG	1 cut(s)	742
SmlI	CTYRAG	5 cut(s)	947, 2035, 2191, 3046, 3446
SmoI	CTYRAG	5 cut(s)	947, 2035, 2191, 3046, 3446
SsiI	CCGC	8 cut(s)	139, 376, 821, 1290, 1490, 2602, 2734, 3040
SspI	AATATT	4 cut(s)	275, 2062, 2320, 2842
SspMI	CTAG	7 cut(s)	459, 954, 1655, 1877, 2519, 3708, 3777
SstI	GAGCTC	1 cut(s)	3630
StyD4I	CCNGG	5 cut(s)	1620, 2086, 2295, 2867, 3560
StyI	CCWWGG	5 cut(s)	1456, 1827, 3096, 3391, 3792
TaaI	ACNGT	7 cut(s)	650, 2368, 2378, 2419, 3276, 3556, 3731
TaqI	TCGA	8 cut(s)	712, 802, 942, 1373, 2984, 3109, 3459, 3669
TatI	WGTACW	3 cut(s)	2243, 2953, 3003
TscAI	CASTG	8 cut(s)	440, 655, 749, 1651, 2005, 2157, 2373, 3561
TseFI	GTSAC	5 cut(s)	1534, 1642, 2072, 3556, 3710
TseI	GCWGC	1 cut(s)	2155
Tsp45I	GTSAC	5 cut(s)	1534, 1642, 2072, 3556, 3710
TspDTI	ATGAA	9 cut(s)	150, 987, 1437, 1758, 2342, 2765, 2946, 3125, 3410
TspGWI	ACGGA	1 cut(s)	2091
TspRI	CASTG	8 cut(s)	440, 655, 749, 1651, 2005, 2157, 2373, 3561
Vha464I	CTTAAG	2 cut(s)	2191, 3446
VpaK11BI	GGWCC	1 cut(s)	3478
VspI	ATTAAT	2 cut(s)	2426, 3585
XapI	RAATTY	9 cut(s)	483, 642, 916, 1137, 1415, 1714, 2347, 2392, 2622
XbaI	TCTAGA	1 cut(s)	2518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1504
XmiI	GTMKAC	1 cut(s)	1373
XmnI	GAANNNNTTC	3 cut(s)	1749, 2169, 3207
XspI	CTAG	7 cut(s)	459, 954, 1655, 1877, 2519, 3708, 3777
Zsp2I	ATGCAT	2 cut(s)	1080, 2782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.