Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

85082706 .. 85086452

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG620700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3747 bp

ATGAGATGCTTCAAGCCTCACATCAAACAGGTTGGTTCTCTTCACTCTCTGTTCTCACTCTTCACCAATAACCACCGCCTCTCAACTACCACTTCTTCATCCCCAATTCCCCATCATCTTCAACAACACACAAAAACCAACACCCAAGTAGATTTATCTCCTAATTGTTTCAATGGTATAGCCCAATCTGTTATATTGAGGTGTTCCCAATATTTTGACAAGAGTAAGGGCAAAGACTTTGCCAATGCTTCTCTAAAAGACCTTCTTTTGGAGATTTCTGATTTAGTGCCTGAACAAACTCGTAGGCTTAGGCGGGTTTCGGCTCCGAAACCCGAAGATGTGCTTGAATTATTACTGGGTTTTGAATTGCAGTGTGCGCAAGTTGGATTTGAAGCTAGAAAGGTTGAGTCTTTGTGGGCAATTTTCAAGTGGGTTAGTGAAAAAGTTGAGGGCTTTAAGCATAAACCTCAGTCATGTGAGGTCATGGCCTCGTTGCTTCTCCGAGTGGGATTGTTTAGAGAAGTTGAGTTCTTGCTTTCCACAATGGAAAGTCAAGGAGTTTTGTTGGATAGTCAAGAAATTTACAGTGATTTGATTAAAGGGTATGTTGGTGTTGGTGAGTTAGATAGGGCCATTTCTGTCTATGATCGAATTACGGGGCGTGTAGTGCCATCATTGCAGTGTTGTTGTGTTCTACTTGATCAATTGGTGGGAATGAGGAAGACCCAATTGGCGTTTCGAGTTTGTAGTGATATGGCGGAAATGGGTTTTGATTTGAGAGATGTGAAGAAGGCCACATTTGAGGGTCTCATTAGACTGCTTTGCAGGGATGGAAAGATTCAGGAGGCAAGAAATTTTGTCAAGAAGGCTATAGCTTTCGAACTCAAGCCTAGCAACTTAGTTTTAAATGAAGTTGCTTATGGATATTGTGAGAAGAAGGACTTTGATGATTTGATGAGCTTCTATTCTGAGATTAAGTGTGCCCCAGAAGTTATGGCTGGGAATAGGATTATGCATTCTCTTTGTAGCCATTTTGGGACAAGAAGAGCAGAACCTTATTTGCAAGAATTAGAAATTTTAGGCTTCAATCCTGATGAGGTAACCTTTGGAATCATGATTGGCTGGAGCTGTCGTGAACGAAAACTTAAAAGTGCCTTTGTTTACCTATCAGAGATGTTGGGAAGACACCTAAACCCCCATATATGTACCTATAATGCTCTTATCAGCGGGGTATTTATGGAGGGTATGTGGAAGCACGCTGGGAAGGTGTTTGATGAGATGGTAGATAGGGGGACTACACCTGATTTGTCGACTTTCAGGATTCTCTTAGCAGGCTATTGTAAAGTCAGAAAATTTGATGAAGCCAAAAGGATAGTTTTTGATATGGCAAGCCATGGACTGATTCAAAACTCTTCAGATGAGGATCCGCTATCCAAAGCATTTATGGTTCTGGGTTTCAAGCCATTAGCTGTGACATTGAAGAGAGATAATGATGTTGGGTTTGCTAAAACAGAGTTTTATGATGATCTTGGGAATGGACTTTATTTGGATACAGACCTGGATAAGTATGAGAAAAGAGTCACTGGGATCCTAGAAGATTGCATGGTACCTGATTATTACTCTCTTATGATGATAGAATGCAGTCGTGGAAATTTGAAGGGTGCTTTGGTTTTGGCAGATGAAATGATCCGGTGGGGACAAGATTTGTCATTGTCTATGATGTCCGACTTACTGAAAGGGCTTTCTGCATCCCATTTACATACCAAGGGTATCACCAGCATTGTAGATAAAAAGCTTCACTTGGTAAATCAGCTAGACCAAGAAACTCTAAACTTTCTTGCCCAAGCATACGGCAAGAAAGGATTGACATATAATACAAGGATAGTGGTGAATGGAATGATAGAAAGGCATCTGAAAATCAACAATGAGACTTACACTGCTTTAGTAAAAGGTTTTTGTAAGAAAGGAAACTTGAGGGAGCTGAATGCTTGCTGGAATATTGCTCAAAATGACGGATGGTTACCAGGGCCGGAAGATTGTAAAGCCTTGATTGAATGTCTTTTCCATAAAGAAATGCTAAGAGAAGCAGTGCAGCTTCTTGAAAGCATTCTGATATCCTACCCAGACTTAAGGTCAGATATGTGTCATATGATCCTTGACAAGCTTTTTGTTACCTGTTGTACAGGAATTGCAAGCATATTGTTAGAAGAACTTGAACAGCGTGGTGGCATCCTGGATCAGATGGCTTATAACAATATTATTAGAGGATTGTGTAAGGGCAAGAATTTTCATGTGGCCTTTACAGTGCTGGACAGTATGCTGGCTAAAAATTTGGCCCCTTGTTTGGATGTTACTGTCCAATTAATTCCTCAGTTGTGTAGGGCTGATAGATTTGGAAAAGCAGTTAACTTGAAAGAGATTGGTCTAAGAGAGAACTCTTCCTATTCACTTTCTCTAGATCGTGCATTGATAAAAGGCTGTTGTATTTCAGGGAAAGTTACAGAAGCAACCACTCTACTACAGAATATGTTGTTAAAGCGGATACCTCCTGATGCTGAAATTTACAATTTTCTGGTTCAGGGTCATTGCAAGGTTAATGACTTAAAGAAAGTTTGGGAGCTACTTTGTGTCATGACAAGAAAAGGTTTCAACATTTCACTCTCAACTTACCGCAACTTGGTGTGTTTGATGTGTCTGGAAGGTAGGGTTCTTCATGCATGGAAATTGACTGAGCTTATGATTGGACAAAGTGATCCTCATGATCTCAGCATCTACAATATTCTGATAGTCTATATTTTCCCAACCGGGAATACTTTGCTTGTCAAGAAAGTTGTGGAGCATTTGCAAGAGAAGAAATTGCTACTTGATGAAGTAACTTACAACTTTCTTGTACTTGGGTTTTGTAGATCTAAAGATGTGTCGAGTGCTGTGGATCATCTGTACGCTATGATCTCTAAGGATTTCAGGCCAAGCAACCGCAACTTGAGAAAAGTTATAACCAGCCTGTGTGATGTTGGGGAGATTGAGAAAGCCTTGGAACTGAGTCGAGAAATGGAATTGAGAGGCCAGATTCATGATTCAATGATTCAAAATGCGATTGTTGAGGGTCTTTCTTCTCGTGGTAGGATTCAAGAAGCTGAAAGTTTTCTGGACAGGATGGTAGAGAAATGTCTAATTCCAGAAAATGTCAACTATAATAATCTAATCAAACTGTTTTGCTCGTATGGAAGACCAAACAAGGCAGTTAATTCTCTGAACATAATGCTGAAGAAAGGGAATGTTCCAGATTCTACCAGTTTTGATTCCATCATCAGCTCTTTCTGTGCCCTTGGTAATCTGGAGCAAGCTATGGATTTTCATGCTGAGATGTTGGATAGAAATCTTAAGCCAAGCACTGACACTTGGGACATTCTGGTCCATAACTTTTGTCAAGATGGAAAAACAGCAGAGGCAGAAAGGCTATTGAAGTCTATGGGTTGTGCAGGTGAAAGAGTGACCAGGAAGATATATCTGTCTGTAATTAATAGTTATCGCTCAGAGAGCAATCTCGGAAAGGTCTCGGAGCTCATGCAAGCAATGCAACAGAGTGGTTATGAGCCAGACTTCGAGACACATTGGTCTCTCATAAGGAACCTAAGAGTTTCTAGTGACAAGGACAATGCAAACAGCAGCAAGGGTTTCCTGTCAAAGCTTCTCTCTGCAAGTGGATTTTCTAGGCAAAAGTATTCCAAGGCCAAACAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

1248

Amino Acids

141.21

Weight (kDa)

7.95

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	354 - 409	7.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	399 - 448	4.4e-14	PPR repeat family
PPR_2	PF13041	850 - 898	1.8e-07	PPR repeat family
TPR_24	PF23276	936 - 1047	2.8e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	1061 - 1108	4.6e-09	PPR repeat family
PPR_2	PF13041	1095 - 1144	2.1e-09	PPR repeat family
PPR_1	PF12854	1126 - 1158	7.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2250, 2996
AarI	CACCTGC	1 cut(s)	3473
AasI	GACNNNNNNGTC	2 cut(s)	3413, 3616
Acc16I	TGCGCA	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	3473
Acc65I	GGTACC	1 cut(s)	1606
AccB1I	GGYRCC	1 cut(s)	1606
AccI	GTMKAC	1 cut(s)	1310
AciI	CCGC	8 cut(s)	76, 313, 758, 1227, 1427, 2539, 2671, 2977
AclWI	GGATC	9 cut(s)	1418, 1431, 1582, 1595, 1681, 2146, 2244, 2747, 2940
AcsI	RAATTY	8 cut(s)	579, 853, 1074, 1352, 1651, 2284, 2329, 2559
AcuI	CTGAAG	2 cut(s)	1398, 3287
AfaI	GTAC	5 cut(s)	1207, 1608, 2182, 2892, 2942
AfiI	CCNNNNNNNGG	4 cut(s)	268, 2344, 2677, 3741
AflII	CTTAAG	2 cut(s)	2128, 3383
AhdI	GACNNNNNGTC	1 cut(s)	2131
AjnI	CCWGG	4 cut(s)	1557, 2023, 2232, 3497
AjuI	GAANNNNNNNTTGG	6 cut(s)	713, 720, 745, 752, 1649, 1681
Alw21I	GWGCWC	1 cut(s)	3567
Alw26I	GTCTC	5 cut(s)	812, 1922, 3562, 3602, 3624
AlwI	GGATC	9 cut(s)	1418, 1431, 1582, 1595, 1681, 2146, 2244, 2747, 2940
AoxI	GGCC	9 cut(s)	486, 630, 792, 2027, 2295, 2334, 2966, 3064, 3732
ApeKI	GCWGC	2 cut(s)	2092, 3669
ApoI	RAATTY	8 cut(s)	579, 853, 1074, 1352, 1651, 2284, 2329, 2559
ArsI	GACNNNNNNTTYG	2 cut(s)	2150, 2182
AseI	ATTAAT	2 cut(s)	2363, 3522
Asp700I	GAANNNNTTC	2 cut(s)	2106, 3144
Asp718I	GGTACC	1 cut(s)	1606
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	4 cut(s)	630, 2027, 2335, 3415
AsuC2I	CCSGG	1 cut(s)	2806
AsuHPI	GGTGA	5 cut(s)	55, 629, 1765, 1900, 3497
AsuII	TTCGAA	1 cut(s)	879
AvaII	GGWCC	1 cut(s)	3415
BaeGI	GKGCMC	2 cut(s)	985, 3328
BamHI	GGATCC	2 cut(s)	1423, 1587
BanI	GGYRCC	1 cut(s)	1606
BanII	GRGCYC	1 cut(s)	3567
BauI	CACGAG	1 cut(s)	3117
BbsI	GAAGAC	3 cut(s)	728, 1189, 3235
Bbv12I	GWGCWC	1 cut(s)	3567
BbvI	GCAGC	2 cut(s)	2104, 3681
BccI	CCATC	9 cut(s)	120, 679, 824, 1273, 2010, 2236, 3151, 3314, 3428
BceAI	ACGGC	1 cut(s)	1867
BciT130I	CCWGG	4 cut(s)	1559, 2025, 2234, 3499
BciVI	GTATCC	2 cut(s)	1543, 2535
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	2806
BcoDI	GTCTC	5 cut(s)	812, 1922, 3562, 3602, 3624
BfaI	CTAG	7 cut(s)	396, 891, 1592, 1814, 2456, 3645, 3714
BfmI	CTRYAG	2 cut(s)	870, 2519
BfrI	CTTAAG	2 cut(s)	2128, 3383
BfuAI	ACCTGC	1 cut(s)	3473
BfuI	GTATCC	2 cut(s)	1543, 2535
BglII	AGATCT	1 cut(s)	2906
BisI	GCNGC	2 cut(s)	2093, 3670
BlsI	GCNGC	2 cut(s)	2094, 3671
Bme1390I	CCNGG	5 cut(s)	1559, 2025, 2234, 2806, 3499
Bme18I	GGWCC	1 cut(s)	3415
BmeRI	GACNNNNNGTC	1 cut(s)	2131
BmgT120I	GGNCC	4 cut(s)	630, 2027, 2335, 3415
BmiI	GGNNCC	6 cut(s)	324, 1425, 1589, 1608, 2337, 3632
BmrFI	CCNGG	5 cut(s)	1559, 2025, 2234, 2806, 3499
BmrI	ACTGGG	2 cut(s)	365, 1593
BmsI	GCATC	5 cut(s)	1757, 1918, 2238, 2542, 2778
BmuI	ACTGGG	2 cut(s)	365, 1593
BpiI	GAAGAC	3 cut(s)	728, 1189, 3235
BpmI	CTGGAG	2 cut(s)	1144, 3359
Bpu10I	CCTNAGC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	879
BpuEI	CTTGAG	3 cut(s)	869, 1993, 3004
BpuMI	CCSGG	1 cut(s)	2806
BsaBI	GATNNNNATC	2 cut(s)	1422, 3378
BsaI	GGTCTC	3 cut(s)	812, 3562, 3624
BsaJI	CCNNGG	6 cut(s)	1393, 1764, 2024, 3033, 3328, 3729
BsaWI	WCCGGW	1 cut(s)	1689
BsaXI	ACNNNNNCTCC	4 cut(s)	1117, 1147, 1232, 1262
Bsc4I	CCNNNNNNNGG	4 cut(s)	268, 2344, 2677, 3741
Bse1I	ACTGG	3 cut(s)	360, 1588, 3294
Bse3DI	GCAATG	3 cut(s)	674, 2584, 3582
Bse8I	GATNNNNATC	2 cut(s)	1422, 3378
BseBI	CCWGG	4 cut(s)	1559, 2025, 2234, 3499
BseDI	CCNNGG	6 cut(s)	1393, 1764, 2024, 3033, 3328, 3729
BseGI	GGATG	7 cut(s)	98, 835, 1748, 2021, 2229, 2353, 3162
BseJI	GATNNNNATC	2 cut(s)	1422, 3378
BseLI	CCNNNNNNNGG	4 cut(s)	268, 2344, 2677, 3741
BseMI	GCAATG	3 cut(s)	674, 2584, 3582
BseMII	CTCAG	8 cut(s)	482, 960, 2384, 2721, 2779, 3032, 3354, 3549
BseNI	ACTGG	3 cut(s)	360, 1588, 3294
BseSI	GKGCMC	2 cut(s)	985, 3328
BseXI	GCAGC	2 cut(s)	2104, 3681
BseYI	CCCAGC	2 cut(s)	998, 1259
BsgI	GTGCAG	2 cut(s)	2111, 3501
BshFI	GGCC	9 cut(s)	488, 632, 794, 2029, 2297, 2336, 2968, 3066, 3734
BshNI	GGYRCC	1 cut(s)	1606
BsiHKAI	GWGCWC	1 cut(s)	3567
BsiSI	CCGG	3 cut(s)	1690, 2030, 2805
BslFI	GGGAC	4 cut(s)	1051, 1306, 1710, 3419
BslI	CCNNNNNNNGG	4 cut(s)	268, 2344, 2677, 3741
BsmAI	GTCTC	5 cut(s)	812, 1922, 3562, 3602, 3624
BsmFI	GGGAC	4 cut(s)	1051, 1306, 1710, 3419
BsmI	GAATGC	4 cut(s)	1015, 1643, 1990, 2106
BsnI	GGCC	9 cut(s)	488, 632, 794, 2029, 2297, 2336, 2968, 3066, 3734
Bso31I	GGTCTC	3 cut(s)	812, 3562, 3624
Bsp119I	TTCGAA	1 cut(s)	879
Bsp1286I	GDGCHC	3 cut(s)	985, 3328, 3567
Bsp1407I	TGTACA	1 cut(s)	2180
Bsp19I	CCATGG	1 cut(s)	1393
BspACI	CCGC	8 cut(s)	76, 313, 758, 1227, 1427, 2539, 2671, 2977
BspANI	GGCC	9 cut(s)	488, 632, 794, 2029, 2297, 2336, 2968, 3066, 3734
BspCNI	CTCAG	8 cut(s)	481, 961, 2383, 2722, 2778, 3033, 3355, 3548
BspHI	TCATGA	4 cut(s)	1113, 2631, 2758, 3073
BspLI	GGNNCC	6 cut(s)	324, 1425, 1589, 1608, 2337, 3632
BspMI	ACCTGC	1 cut(s)	3473
BspPI	GGATC	9 cut(s)	1418, 1431, 1582, 1595, 1681, 2146, 2244, 2747, 2940
BspQI	GCTCTTC	1 cut(s)	1039
BspT104I	TTCGAA	1 cut(s)	879
BspT107I	GGYRCC	1 cut(s)	1606
BspTI	CTTAAG	2 cut(s)	2128, 3383
BspTNI	GGTCTC	3 cut(s)	812, 3562, 3624
BsrDI	GCAATG	3 cut(s)	674, 2584, 3582
BsrGI	TGTACA	1 cut(s)	2180
BsrI	ACTGG	3 cut(s)	360, 1588, 3294
BssECI	CCNNGG	6 cut(s)	1393, 1764, 2024, 3033, 3328, 3729
BssSI	CACGAG	1 cut(s)	3117
BssT1I	CCWWGG	5 cut(s)	1393, 1764, 3033, 3328, 3729
Bst2BI	CACGAG	1 cut(s)	3117
Bst2UI	CCWGG	4 cut(s)	1559, 2025, 2234, 3499
Bst4CI	ACNGT	5 cut(s)	587, 2305, 2315, 2356, 3213
Bst6I	CTCTTC	6 cut(s)	45, 65, 1039, 1417, 1475, 2443
BstAFI	CTTAAG	2 cut(s)	2128, 3383
BstAPI	GCANNNNNTGC	1 cut(s)	3577
BstAUI	TGTACA	1 cut(s)	2180
BstBI	TTCGAA	1 cut(s)	879
BstC8I	GCNNGC	8 cut(s)	1257, 1333, 1390, 1990, 2194, 2322, 3345, 3573
BstDSI	CCRYGG	1 cut(s)	1393
BstEII	GGTNACC	2 cut(s)	1099, 2019
BstF5I	GGATG	7 cut(s)	98, 835, 1748, 2021, 2229, 2353, 3162
BstHHI	GCGC	1 cut(s)	379
BstMAI	GTCTC	5 cut(s)	812, 1922, 3562, 3602, 3624
BstMWI	GCNNNNNNNGC	5 cut(s)	376, 667, 676, 3540, 3577
BstNI	CCWGG	4 cut(s)	1559, 2025, 2234, 3499
BstPI	GGTNACC	2 cut(s)	1099, 2019
BstSCI	CCNGG	5 cut(s)	1557, 2023, 2232, 2804, 3497
BstSFI	CTRYAG	2 cut(s)	870, 2519
BstSLI	GKGCMC	2 cut(s)	985, 3328
BstV1I	GCAGC	2 cut(s)	2104, 3681
BstV2I	GAAGAC	3 cut(s)	728, 1189, 3235
BstX2I	RGATCY	3 cut(s)	1423, 1587, 2906
BstYI	RGATCY	3 cut(s)	1423, 1587, 2906
BsuI	GTATCC	2 cut(s)	1543, 2535
BsuRI	GGCC	9 cut(s)	488, 632, 794, 2029, 2297, 2336, 2968, 3066, 3734
BtgI	CCRYGG	1 cut(s)	1393
BtsCI	GGATG	7 cut(s)	98, 835, 1748, 2021, 2229, 2353, 3162
BtsI	GCAGTG	4 cut(s)	377, 686, 1935, 2094
BtsIMutI	CAGTG	8 cut(s)	377, 592, 686, 1581, 1935, 2094, 2310, 3393
BveI	ACCTGC	1 cut(s)	3473
Cac8I	GCNNGC	8 cut(s)	1257, 1333, 1390, 1990, 2194, 2322, 3345, 3573
CciI	TCATGA	4 cut(s)	1113, 2631, 2758, 3073
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	4 cut(s)	630, 2027, 2335, 3415
Csp6I	GTAC	5 cut(s)	1206, 1607, 2181, 2891, 2941
CspCI	CAANNNNNGTGG	2 cut(s)	1866, 1901
CviQI	GTAC	5 cut(s)	1206, 1607, 2181, 2891, 2941
DraI	TTTAAA	1 cut(s)	906
DrdI	GACNNNNNNGTC	2 cut(s)	3413, 3616
DriI	GACNNNNNGTC	1 cut(s)	2131
DseDI	GACNNNNNNGTC	2 cut(s)	3413, 3616
Eam1104I	CTCTTC	6 cut(s)	45, 65, 1039, 1417, 1475, 2443
Eam1105I	GACNNNNNGTC	1 cut(s)	2131
EarI	CTCTTC	6 cut(s)	45, 65, 1039, 1417, 1475, 2443
EciI	GGCGGA	1 cut(s)	773
Ecl136II	GAGCTC	1 cut(s)	3565
Eco130I	CCWWGG	5 cut(s)	1393, 1764, 3033, 3328, 3729
Eco24I	GRGCYC	1 cut(s)	3567
Eco31I	GGTCTC	3 cut(s)	812, 3562, 3624
Eco32I	GATATC	1 cut(s)	2115
Eco47I	GGWCC	1 cut(s)	3415
Eco53kI	GAGCTC	1 cut(s)	3565
Eco57I	CTGAAG	2 cut(s)	1398, 3287
Eco91I	GGTNACC	2 cut(s)	1099, 2019
EcoICRI	GAGCTC	1 cut(s)	3565
EcoO65I	GGTNACC	2 cut(s)	1099, 2019
EcoRII	CCWGG	4 cut(s)	1557, 2023, 2232, 3497
EcoRV	GATATC	1 cut(s)	2115
EcoT14I	CCWWGG	5 cut(s)	1393, 1764, 3033, 3328, 3729
EcoT22I	ATGCAT	2 cut(s)	1017, 2719
EcoT38I	GRGCYC	1 cut(s)	3567
ErhI	CCWWGG	5 cut(s)	1393, 1764, 3033, 3328, 3729
FalI	AAGNNNNNCTT	8 cut(s)	249, 281, 327, 359, 926, 958, 1784, 1816
FaqI	GGGAC	4 cut(s)	1051, 1306, 1710, 3419
FauI	CCCGC	2 cut(s)	306, 1220
FauNDI	CATATG	1 cut(s)	2148
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	1310
Fnu4HI	GCNGC	2 cut(s)	2093, 3670
FokI	GGATG	7 cut(s)	85, 842, 1735, 2028, 2216, 2360, 3169
FriOI	GRGCYC	1 cut(s)	3567
Fsp4HI	GCNGC	2 cut(s)	2093, 3670
FspBI	CTAG	7 cut(s)	396, 891, 1592, 1814, 2456, 3645, 3714
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	2 cut(s)	2093, 3670
GsaI	CCCAGC	2 cut(s)	1002, 1263
GsuI	CTGGAG	2 cut(s)	1144, 3359
HaeIII	GGCC	9 cut(s)	488, 632, 794, 2029, 2297, 2336, 2968, 3066, 3734
HapII	CCGG	3 cut(s)	1690, 2030, 2805
HhaI	GCGC	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	3 cut(s)	1311, 2407, 3190
HindII	GTYRAC	3 cut(s)	1311, 2407, 3190
HindIII	AAGCTT	3 cut(s)	1793, 2162, 3689
HpaI	GTTAAC	1 cut(s)	2407
HpaII	CCGG	3 cut(s)	1690, 2030, 2805
HphI	GGTGA	5 cut(s)	55, 629, 1765, 1900, 3497
Hpy166II	GTNNAC	5 cut(s)	1136, 1162, 1311, 2407, 3190
Hpy8I	GTNNAC	5 cut(s)	1136, 1162, 1311, 2407, 3190
HpyAV	CCTTC	7 cut(s)	272, 784, 859, 931, 1258, 1651, 2693
HpyCH4III	ACNGT	5 cut(s)	587, 2305, 2315, 2356, 3213
HpyF10VI	GCNNNNNNNGC	5 cut(s)	376, 667, 676, 3540, 3577
HspAI	GCGC	1 cut(s)	377
KpnI	GGTACC	1 cut(s)	1610
Ksp22I	TGATCA	1 cut(s)	700
KspAI	GTTAAC	1 cut(s)	2407
LguI	GCTCTTC	1 cut(s)	1039
LmnI	GCTCC	7 cut(s)	328, 1125, 1978, 2617, 2836, 3340, 3562
Lsp1109I	GCAGC	2 cut(s)	2104, 3681
LweI	GCATC	5 cut(s)	1757, 1918, 2238, 2542, 2778
MaeI	CTAG	7 cut(s)	396, 891, 1592, 1814, 2456, 3645, 3714
MfeI	CAATTG	2 cut(s)	704, 728
MflI	RGATCY	3 cut(s)	1423, 1587, 2906
MhlI	GDGCHC	3 cut(s)	985, 3328, 3567
MlyI	GAGTC	3 cut(s)	416, 1587, 3052
MmeI	TCCRAC	4 cut(s)	364, 546, 1749, 3351
Mph1103I	ATGCAT	2 cut(s)	1017, 2719
MroXI	GAANNNNTTC	2 cut(s)	2106, 3144
MslI	CAYNNNNRTG	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	1227
MspCI	CTTAAG	2 cut(s)	2128, 3383
MspI	CCGG	3 cut(s)	1690, 2030, 2805
MspR9I	CCNGG	5 cut(s)	1559, 2025, 2234, 2806, 3499
MunI	CAATTG	2 cut(s)	704, 728
Mva1269I	GAATGC	4 cut(s)	1015, 1643, 1990, 2106
MvaI	CCWGG	4 cut(s)	1559, 2025, 2234, 3499
MwoI	GCNNNNNNNGC	5 cut(s)	376, 667, 676, 3540, 3577
NciI	CCSGG	1 cut(s)	2806
NcoI	CCATGG	1 cut(s)	1393
NdeI	CATATG	1 cut(s)	2148
NlaIV	GGNNCC	6 cut(s)	324, 1425, 1589, 1608, 2337, 3632
NmuCI	GTSAC	4 cut(s)	1471, 1579, 3493, 3647
NsbI	TGCGCA	1 cut(s)	378
NsiI	ATGCAT	2 cut(s)	1017, 2719
NspV	TTCGAA	1 cut(s)	879
PagI	TCATGA	4 cut(s)	1113, 2631, 2758, 3073
PaqCI	CACCTGC	1 cut(s)	3473
PciSI	GCTCTTC	1 cut(s)	1039
PctI	GAATGC	4 cut(s)	1015, 1643, 1990, 2106
PdmI	GAANNNNTTC	2 cut(s)	2106, 3144
PfoI	TCCNGGA	1 cut(s)	2232
PkrI	GCNGC	2 cut(s)	2094, 3671
PleI	GAGTC	3 cut(s)	415, 1586, 3051
PpsI	GAGTC	3 cut(s)	415, 1586, 3051
PshBI	ATTAAT	2 cut(s)	2363, 3522
PsiI	TTATAA	2 cut(s)	2250, 2996
Psp124BI	GAGCTC	1 cut(s)	3567
Psp6I	CCWGG	4 cut(s)	1557, 2023, 2232, 3497
PspEI	GGTNACC	2 cut(s)	1099, 2019
PspFI	CCCAGC	2 cut(s)	998, 1259
PspGI	CCWGG	4 cut(s)	1557, 2023, 2232, 3497
PspN4I	GGNNCC	6 cut(s)	324, 1425, 1589, 1608, 2337, 3632
PspPI	GGNCC	4 cut(s)	630, 2027, 2335, 3415
PsuI	RGATCY	3 cut(s)	1423, 1587, 2906
RsaI	GTAC	5 cut(s)	1207, 1608, 2182, 2892, 2942
RsaNI	GTAC	5 cut(s)	1206, 1607, 2181, 2891, 2941
RseI	CAYNNNNRTG	1 cut(s)	679
SacI	GAGCTC	1 cut(s)	3567
SalI	GTCGAC	1 cut(s)	1309
SapI	GCTCTTC	1 cut(s)	1039
SatI	GCNGC	2 cut(s)	2093, 3670
Sau96I	GGNCC	4 cut(s)	630, 2027, 2335, 3415
SchI	GAGTC	3 cut(s)	416, 1587, 3052
ScrFI	CCNGG	5 cut(s)	1559, 2025, 2234, 2806, 3499
SduI	GDGCHC	3 cut(s)	985, 3328, 3567
SfaNI	GCATC	5 cut(s)	1757, 1918, 2238, 2542, 2778
SfcI	CTRYAG	2 cut(s)	870, 2519
SfuI	TTCGAA	1 cut(s)	879
SinI	GGWCC	1 cut(s)	3415
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	5 cut(s)	884, 1972, 2128, 2983, 3383
SmoI	CTYRAG	5 cut(s)	884, 1972, 2128, 2983, 3383
SsiI	CCGC	8 cut(s)	76, 313, 758, 1227, 1427, 2539, 2671, 2977
SspI	AATATT	4 cut(s)	212, 1999, 2257, 2779
SspMI	CTAG	7 cut(s)	396, 891, 1592, 1814, 2456, 3645, 3714
SstI	GAGCTC	1 cut(s)	3567
StyD4I	CCNGG	5 cut(s)	1557, 2023, 2232, 2804, 3497
StyI	CCWWGG	5 cut(s)	1393, 1764, 3033, 3328, 3729
TaaI	ACNGT	5 cut(s)	587, 2305, 2315, 2356, 3213
TaqI	TCGA	7 cut(s)	649, 739, 879, 1310, 2921, 3046, 3606
TatI	WGTACW	2 cut(s)	2180, 2890
TscAI	CASTG	8 cut(s)	377, 592, 686, 1588, 1942, 2094, 2310, 3400
TseFI	GTSAC	4 cut(s)	1471, 1579, 3493, 3647
TseI	GCWGC	2 cut(s)	2092, 3669
Tsp45I	GTSAC	4 cut(s)	1471, 1579, 3493, 3647
TspDTI	ATGAA	9 cut(s)	87, 924, 1374, 1695, 2279, 2702, 2883, 3062, 3347
TspGWI	ACGGA	1 cut(s)	2028
TspRI	CASTG	8 cut(s)	377, 592, 686, 1588, 1942, 2094, 2310, 3400
Vha464I	CTTAAG	2 cut(s)	2128, 3383
VpaK11BI	GGWCC	1 cut(s)	3415
VspI	ATTAAT	2 cut(s)	2363, 3522
XapI	RAATTY	8 cut(s)	579, 853, 1074, 1352, 1651, 2284, 2329, 2559
XbaI	TCTAGA	1 cut(s)	2455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1441
XmiI	GTMKAC	1 cut(s)	1310
XmnI	GAANNNNTTC	2 cut(s)	2106, 3144
XspI	CTAG	7 cut(s)	396, 891, 1592, 1814, 2456, 3645, 3714
Zsp2I	ATGCAT	2 cut(s)	1017, 2719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.