Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G15280 |
| fragaria_vesca | FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880 |
| malus_domestica | MD09G1053400.v1.1 |
| prunus_persica | Prupe.3G265200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581 |
| rosa_laevigata | RLG00000021724 RLG00000021736 |
| rosa_multiflora | Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440 |
| rosa_rugosa | Rorug02G0530600 |
| rosa_samantha | Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700 |
| rosa_wichuraiana | Rw2G049750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 730 |
| AcsI | RAATTY | 3 cut(s) | 96, 370, 591 |
| AgsI | TTSAA | 4 cut(s) | 116, 257, 397, 604 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 108, 140, 230, 262 |
| AluBI | AGCT | 2 cut(s) | 477, 645 |
| AluI | AGCT | 2 cut(s) | 477, 645 |
| AoxI | GGCC | 3 cut(s) | 3, 147, 309 |
| ApoI | RAATTY | 3 cut(s) | 96, 370, 591 |
| AspS9I | GGNCC | 1 cut(s) | 147 |
| AsuHPI | GGTGA | 1 cut(s) | 146 |
| BaeGI | GKGCMC | 1 cut(s) | 502 |
| BbsI | GAAGAC | 2 cut(s) | 245, 706 |
| BccI | CCATC | 2 cut(s) | 196, 341 |
| BclI | TGATCA | 2 cut(s) | 163, 217 |
| BfaI | CTAG | 1 cut(s) | 408 |
| BmgT120I | GGNCC | 1 cut(s) | 147 |
| BpiI | GAAGAC | 2 cut(s) | 245, 706 |
| BpmI | CTGGAG | 1 cut(s) | 661 |
| BpuEI | CTTGAG | 1 cut(s) | 386 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 634, 664, 735, 765 |
| Bse3DI | GCAATG | 1 cut(s) | 191 |
| BseGI | GGATG | 1 cut(s) | 352 |
| BseMI | GCAATG | 1 cut(s) | 191 |
| BseMII | CTCAG | 1 cut(s) | 477 |
| BseSI | GKGCMC | 1 cut(s) | 502 |
| BseYI | CCCAGC | 2 cut(s) | 515, 762 |
| BshFI | GGCC | 3 cut(s) | 5, 149, 311 |
| BslFI | GGGAC | 1 cut(s) | 568 |
| BsmFI | GGGAC | 1 cut(s) | 568 |
| BsmI | GAATGC | 1 cut(s) | 532 |
| BsnI | GGCC | 3 cut(s) | 5, 149, 311 |
| Bsp1286I | GDGCHC | 1 cut(s) | 502 |
| Bsp143I | GATC | 2 cut(s) | 163, 217 |
| BspACI | CCGC | 1 cut(s) | 730 |
| BspANI | GGCC | 3 cut(s) | 5, 149, 311 |
| BspCNI | CTCAG | 1 cut(s) | 478 |
| BspHI | TCATGA | 2 cut(s) | 378, 630 |
| BspQI | GCTCTTC | 1 cut(s) | 556 |
| BsrDI | GCAATG | 1 cut(s) | 191 |
| BssMI | GATC | 2 cut(s) | 163, 217 |
| Bst4CI | ACNGT | 1 cut(s) | 104 |
| Bst6I | CTCTTC | 1 cut(s) | 556 |
| BstC8I | GCNNGC | 1 cut(s) | 760 |
| BstDEI | CTNAG | 3 cut(s) | 32, 415, 486 |
| BstEII | GGTNACC | 1 cut(s) | 616 |
| BstF5I | GGATG | 1 cut(s) | 352 |
| BstKTI | GATC | 2 cut(s) | 166, 220 |
| BstMBI | GATC | 2 cut(s) | 163, 217 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 184, 193 |
| BstNSI | RCATGY | 1 cut(s) | 762 |
| BstPI | GGTNACC | 1 cut(s) | 616 |
| BstSLI | GKGCMC | 1 cut(s) | 502 |
| BstV2I | GAAGAC | 2 cut(s) | 245, 706 |
| BsuRI | GGCC | 3 cut(s) | 5, 149, 311 |
| BtsCI | GGATG | 1 cut(s) | 352 |
| BtsI | GCAGTG | 1 cut(s) | 203 |
| BtsIMutI | CAGTG | 2 cut(s) | 109, 203 |
| Cac8I | GCNNGC | 1 cut(s) | 760 |
| CciI | TCATGA | 2 cut(s) | 378, 630 |
| Cfr13I | GGNCC | 1 cut(s) | 147 |
| CviAII | CATG | 3 cut(s) | 379, 631, 759 |
| DdeI | CTNAG | 3 cut(s) | 32, 415, 486 |
| DpnI | GATC | 2 cut(s) | 165, 219 |
| DpnII | GATC | 2 cut(s) | 163, 217 |
| DraI | TTTAAA | 1 cut(s) | 423 |
| Eam1104I | CTCTTC | 1 cut(s) | 556 |
| EarI | CTCTTC | 1 cut(s) | 556 |
| Eco91I | GGTNACC | 1 cut(s) | 616 |
| EcoO65I | GGTNACC | 1 cut(s) | 616 |
| EcoT22I | ATGCAT | 1 cut(s) | 534 |
| FaeI | CATG | 3 cut(s) | 382, 634, 762 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 443, 475 |
| FaqI | GGGAC | 1 cut(s) | 568 |
| FatI | CATG | 3 cut(s) | 378, 630, 758 |
| FauI | CCCGC | 1 cut(s) | 723 |
| FbaI | TGATCA | 2 cut(s) | 163, 217 |
| FokI | GGATG | 1 cut(s) | 359 |
| FspBI | CTAG | 1 cut(s) | 408 |
| GsaI | CCCAGC | 2 cut(s) | 519, 766 |
| GsuI | CTGGAG | 1 cut(s) | 661 |
| HaeIII | GGCC | 3 cut(s) | 5, 149, 311 |
| Hin1II | CATG | 3 cut(s) | 382, 634, 762 |
| HinfI | GANTC | 2 cut(s) | 355, 627 |
| HphI | GGTGA | 1 cut(s) | 146 |
| Hpy166II | GTNNAC | 2 cut(s) | 653, 679 |
| Hpy188I | TCNGA | 2 cut(s) | 20, 688 |
| Hpy188III | TCNNGA | 6 cut(s) | 92, 359, 379, 608, 631, 650 |
| Hpy8I | GTNNAC | 2 cut(s) | 653, 679 |
| HpyAV | CCTTC | 5 cut(s) | 110, 301, 376, 448, 761 |
| HpyCH4III | ACNGT | 1 cut(s) | 104 |
| HpyCH4V | TGCA | 3 cut(s) | 196, 532, 580 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 184, 193 |
| HpyF3I | CTNAG | 3 cut(s) | 32, 415, 486 |
| Hsp92II | CATG | 3 cut(s) | 382, 634, 762 |
| Ksp22I | TGATCA | 2 cut(s) | 163, 217 |
| Kzo9I | GATC | 2 cut(s) | 163, 217 |
| LguI | GCTCTTC | 1 cut(s) | 556 |
| LmnI | GCTCC | 1 cut(s) | 642 |
| LpnPI | CCDG | 7 cut(s) | 328, 344, 501, 516, 621, 625, 748 |
| MaeI | CTAG | 1 cut(s) | 408 |
| MaeIII | GTNAC | 1 cut(s) | 616 |
| MalI | GATC | 2 cut(s) | 165, 219 |
| MboI | GATC | 2 cut(s) | 163, 217 |
| MboII | GAAGA | 5 cut(s) | 250, 316, 463, 573, 711 |
| MfeI | CAATTG | 1 cut(s) | 221 |
| MhlI | GDGCHC | 1 cut(s) | 502 |
| MluCI | AATT | 7 cut(s) | 96, 168, 221, 245, 370, 584, 591 |
| MlyI | GAGTC | 1 cut(s) | 621 |
| MmeI | TCCRAC | 1 cut(s) | 63 |
| MnlI | CCTC | 6 cut(s) | 16, 228, 313, 355, 607, 737 |
| Mph1103I | ATGCAT | 1 cut(s) | 534 |
| MseI | TTAA | 3 cut(s) | 422, 492, 663 |
| MslI | CAYNNNNRTG | 1 cut(s) | 196 |
| MspA1I | CMGCKG | 1 cut(s) | 730 |
| MunI | CAATTG | 1 cut(s) | 221 |
| Mva1269I | GAATGC | 1 cut(s) | 532 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 184, 193 |
| NdeII | GATC | 2 cut(s) | 163, 217 |
| NlaIII | CATG | 3 cut(s) | 382, 634, 762 |
| NsiI | ATGCAT | 1 cut(s) | 534 |
| NspI | RCATGY | 1 cut(s) | 762 |
| PaeI | GCATGC | 1 cut(s) | 762 |
| PagI | TCATGA | 2 cut(s) | 378, 630 |
| PciSI | GCTCTTC | 1 cut(s) | 556 |
| PctI | GAATGC | 1 cut(s) | 532 |
| PfeI | GAWTC | 1 cut(s) | 355 |
| PleI | GAGTC | 1 cut(s) | 621 |
| PpsI | GAGTC | 1 cut(s) | 621 |
| PspEI | GGTNACC | 1 cut(s) | 616 |
| PspFI | CCCAGC | 2 cut(s) | 515, 762 |
| PspPI | GGNCC | 1 cut(s) | 147 |
| RseI | CAYNNNNRTG | 1 cut(s) | 196 |
| SapI | GCTCTTC | 1 cut(s) | 556 |
| SaqAI | TTAA | 3 cut(s) | 422, 492, 663 |
| Sau3AI | GATC | 2 cut(s) | 163, 217 |
| Sau96I | GGNCC | 1 cut(s) | 147 |
| SchI | GAGTC | 1 cut(s) | 621 |
| SduI | GDGCHC | 1 cut(s) | 502 |
| SetI | ASST | 8 cut(s) | 479, 574, 618, 623, 647, 684, 708, 772 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 196 |
| SmlI | CTYRAG | 1 cut(s) | 401 |
| SmoI | CTYRAG | 1 cut(s) | 401 |
| SphI | GCATGC | 1 cut(s) | 762 |
| Sse9I | AATT | 7 cut(s) | 96, 168, 221, 245, 370, 584, 591 |
| SsiI | CCGC | 1 cut(s) | 730 |
| SspMI | CTAG | 1 cut(s) | 408 |
| TaaI | ACNGT | 1 cut(s) | 104 |
| TaqII | GACCGA | 1 cut(s) | 257 |
| TasI | AATT | 7 cut(s) | 96, 168, 221, 245, 370, 584, 591 |
| TfiI | GAWTC | 1 cut(s) | 355 |
| Tru1I | TTAA | 3 cut(s) | 422, 492, 663 |
| Tru9I | TTAA | 3 cut(s) | 422, 492, 663 |
| TscAI | CASTG | 2 cut(s) | 109, 203 |
| TspDTI | ATGAA | 2 cut(s) | 395, 441 |
| TspRI | CASTG | 2 cut(s) | 109, 203 |
| XapI | RAATTY | 3 cut(s) | 96, 370, 591 |
| XceI | RCATGY | 1 cut(s) | 762 |
| XspI | CTAG | 1 cut(s) | 408 |
| Zsp2I | ATGCAT | 1 cut(s) | 534 |