Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

85229328 .. 85229945

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG621900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCTAAGAGAAGCAGTGCAGCTTCTTGAAAGCATTCTGATATCCTACCCAGACTTAAGGTCAGAAATGTGTCATATGATCCTTGACAAGCTTTTTGTTACCGGTTGTACAGGAATTGCAAGCATATTGTTAGAAGAACTTGAACAGCGTGGTGGCATCCTGGATCAGATGGCTTATAACAATATTATTAGAGGATTGTGTAGGGGCAAGAATTTTCATGTGGCCTTTACAGTGCTGGCTAAAAATTTGGCCCCTTGTTTGGATGTTACTGTCCAATTAATTCCTCAGTTGTGTAGGGCTGATAGATTTGGAAAAGCAGTTAACTTGAAAGAGATTGGTCTAAGAGAGAACTCTTCCTATTCACTTAATCTAGATCGTGCATTGATAAAAGGCTGTTGTATTTCAGGGAAAGTTACAGAAGCAACCACTCTACTACAGAATATGTTGTTAAAGTGGATACCTCCTGATGCTGAAATTTACAATTTTCTGGTTCAGGGTCATTGTAAGGTTAATGACTTAAAGAAAGTTTGGGAGCTACTTTGTGTCATGACAAGAAAAGGTTTCGACATTTCACTCAACTTACCGCAACTTGGTGTGTTTGATGTGTCTGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

205

Amino Acids

22.97

Weight (kDa)

8.06

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	155 - 189	3.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AciI	CCGC	1 cut(s)	584
AclWI	GGATC	2 cut(s)	73, 171
AcsI	RAATTY	3 cut(s)	211, 244, 474
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	259, 590
AflII	CTTAAG	1 cut(s)	55
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	29, 143, 328
AhdI	GACNNNNNGTC	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	3 cut(s)	22, 91, 535
AluI	AGCT	3 cut(s)	22, 91, 535
AlwI	GGATC	2 cut(s)	73, 171
AoxI	GGCC	2 cut(s)	222, 249
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	3 cut(s)	211, 244, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AseI	ATTAAT	1 cut(s)	278
AsiGI	ACCGGT	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	161
BciVI	GTATCC	1 cut(s)	450
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	434
BfrI	CTTAAG	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	450
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	161
BmeRI	GACNNNNNGTC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	165, 457
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 590
Bse118I	RCCGGY	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	161
BseGI	GGATG	2 cut(s)	156, 268
BseLI	CCNNNNNNNGG	2 cut(s)	259, 590
BseMII	CTCAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	224, 251
BshTI	ACCGGT	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	259, 590
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	224, 251
Bsp1407I	TGTACA	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	78, 163, 373
BspACI	CCGC	1 cut(s)	584
BspANI	GGCC	2 cut(s)	224, 251
BspCNI	CTCAG	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	73, 171
BspTI	CTTAAG	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	101
BsrGI	TGTACA	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	3 cut(s)	78, 163, 373
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	232, 271
Bst6I	CTCTTC	1 cut(s)	358
BstAFI	CTTAAG	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	121, 237
BstDEI	CTNAG	3 cut(s)	5, 285, 341
BstF5I	GGATG	2 cut(s)	156, 268
BstKTI	GATC	3 cut(s)	81, 166, 376
BstMBI	GATC	3 cut(s)	78, 163, 373
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	434
BstV1I	GCAGC	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	224, 251
BtsCI	GGATG	2 cut(s)	156, 268
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 237
Cac8I	GCNNGC	2 cut(s)	121, 237
CciI	TCATGA	1 cut(s)	546
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	108
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	2 cut(s)	218, 547
CviJI	RGCY	9 cut(s)	22, 91, 173, 224, 239, 251, 299, 393, 535
CviKI_1	RGCY	9 cut(s)	22, 91, 173, 224, 239, 251, 299, 393, 535
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	3 cut(s)	5, 285, 341
DpnI	GATC	3 cut(s)	80, 165, 375
DpnII	GATC	3 cut(s)	78, 163, 373
DriI	GACNNNNNGTC	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	358
Eam1105I	GACNNNNNGTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	42
FaeI	CATG	2 cut(s)	221, 550
FaiI	YATR	7 cut(s)	75, 77, 125, 177, 219, 443, 548
FatI	CATG	2 cut(s)	217, 546
FauNDI	CATATG	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	2 cut(s)	143, 275
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	224, 251
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	2 cut(s)	221, 550
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	89
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	3 cut(s)	39, 64, 168
Hpy188III	TCNNGA	5 cut(s)	26, 371, 464, 547, 609
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	1 cut(s)	606
HpyCH4III	ACNGT	2 cut(s)	232, 271
HpyCH4V	TGCA	3 cut(s)	19, 119, 380
HpyF3I	CTNAG	3 cut(s)	5, 285, 341
Hsp92II	CATG	2 cut(s)	221, 550
KspAI	GTTAAC	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	78, 163, 373
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	165, 457
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	3 cut(s)	97, 265, 412
MalI	GATC	3 cut(s)	80, 165, 375
MboI	GATC	3 cut(s)	78, 163, 373
MboII	GAAGA	2 cut(s)	146, 345
MluCI	AATT	7 cut(s)	114, 211, 244, 275, 279, 474, 481
MnlI	CCTC	3 cut(s)	185, 294, 471
MroXI	GAANNNNTTC	1 cut(s)	33
MseI	TTAA	7 cut(s)	56, 278, 321, 366, 449, 510, 518
MspCI	CTTAAG	1 cut(s)	55
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	75
NdeII	GATC	3 cut(s)	78, 163, 373
NlaIII	CATG	2 cut(s)	221, 550
NlaIV	GGNNCC	1 cut(s)	252
PagI	TCATGA	1 cut(s)	546
PctI	GAATGC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	33
PfoI	TCCNGGA	1 cut(s)	159
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	21
PshBI	ATTAAT	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	250
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	7 cut(s)	56, 278, 321, 366, 449, 510, 518
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	78, 163, 373
Sau96I	GGNCC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	8 cut(s)	24, 62, 93, 463, 510, 537, 562, 617
SfaNI	GCATC	2 cut(s)	165, 457
SfcI	CTRYAG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	7 cut(s)	114, 211, 244, 275, 279, 474, 481
SsiI	CCGC	1 cut(s)	584
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	232, 271
TaqI	TCGA	1 cut(s)	564
TasI	AATT	7 cut(s)	114, 211, 244, 275, 279, 474, 481
TatI	WGTACW	1 cut(s)	107
Tru1I	TTAA	7 cut(s)	56, 278, 321, 366, 449, 510, 518
Tru9I	TTAA	7 cut(s)	56, 278, 321, 366, 449, 510, 518
TscAI	CASTG	2 cut(s)	21, 237
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	21, 237
Vha464I	CTTAAG	1 cut(s)	55
VspI	ATTAAT	1 cut(s)	278
XapI	RAATTY	3 cut(s)	211, 244, 474
XbaI	TCTAGA	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.