Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G15280 |
| fragaria_vesca | FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880 |
| malus_domestica | MD09G1053400.v1.1 |
| prunus_persica | Prupe.3G265200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581 |
| rosa_laevigata | RLG00000021724 RLG00000021736 |
| rosa_multiflora | Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440 |
| rosa_rugosa | Rorug02G0530600 |
| rosa_samantha | Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700 |
| rosa_wichuraiana | Rw2G049750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 9 |
| AciI | CCGC | 2 cut(s) | 225, 286 |
| AcsI | RAATTY | 4 cut(s) | 43, 76, 306, 315 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 91 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AoxI | GGCC | 2 cut(s) | 54, 81 |
| ApoI | RAATTY | 4 cut(s) | 43, 76, 306, 315 |
| AseI | ATTAAT | 1 cut(s) | 110 |
| AspS9I | GGNCC | 1 cut(s) | 82 |
| BciVI | GTATCC | 1 cut(s) | 282 |
| BfaI | CTAG | 1 cut(s) | 203 |
| BfmI | CTRYAG | 1 cut(s) | 266 |
| BfuI | GTATCC | 1 cut(s) | 282 |
| BisI | GCNGC | 1 cut(s) | 226 |
| BlsI | GCNGC | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 1 cut(s) | 82 |
| BmiI | GGNNCC | 1 cut(s) | 84 |
| BmsI | GCATC | 1 cut(s) | 289 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 91 |
| Bse3DI | GCAATG | 1 cut(s) | 332 |
| BseGI | GGATG | 1 cut(s) | 100 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BseMI | GCAATG | 1 cut(s) | 332 |
| BseMII | CTCAG | 1 cut(s) | 131 |
| BshFI | GGCC | 2 cut(s) | 56, 83 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BsnI | GGCC | 2 cut(s) | 56, 83 |
| Bsp143I | GATC | 1 cut(s) | 205 |
| BspACI | CCGC | 2 cut(s) | 225, 286 |
| BspANI | GGCC | 2 cut(s) | 56, 83 |
| BspCNI | CTCAG | 1 cut(s) | 130 |
| BspLI | GGNNCC | 1 cut(s) | 84 |
| BsrDI | GCAATG | 1 cut(s) | 332 |
| BssMI | GATC | 1 cut(s) | 205 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 103 |
| Bst6I | CTCTTC | 1 cut(s) | 190 |
| BstC8I | GCNNGC | 1 cut(s) | 69 |
| BstDEI | CTNAG | 2 cut(s) | 117, 173 |
| BstF5I | GGATG | 1 cut(s) | 100 |
| BstKTI | GATC | 1 cut(s) | 208 |
| BstMBI | GATC | 1 cut(s) | 205 |
| BstSFI | CTRYAG | 1 cut(s) | 266 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 320 |
| BsuI | GTATCC | 1 cut(s) | 282 |
| BsuRI | GGCC | 2 cut(s) | 56, 83 |
| BtsCI | GGATG | 1 cut(s) | 100 |
| BtsIMutI | CAGTG | 1 cut(s) | 69 |
| Cac8I | GCNNGC | 1 cut(s) | 69 |
| Cfr13I | GGNCC | 1 cut(s) | 82 |
| CviAII | CATG | 1 cut(s) | 50 |
| CviJI | RGCY | 5 cut(s) | 5, 56, 71, 83, 131 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 56, 71, 83, 131 |
| DdeI | CTNAG | 2 cut(s) | 117, 173 |
| DpnI | GATC | 1 cut(s) | 207 |
| DpnII | GATC | 1 cut(s) | 205 |
| Eam1104I | CTCTTC | 1 cut(s) | 190 |
| EarI | CTCTTC | 1 cut(s) | 190 |
| FaeI | CATG | 1 cut(s) | 53 |
| FaiI | YATR | 3 cut(s) | 9, 51, 275 |
| FatI | CATG | 1 cut(s) | 49 |
| Fnu4HI | GCNGC | 1 cut(s) | 226 |
| FokI | GGATG | 1 cut(s) | 107 |
| Fsp4HI | GCNGC | 1 cut(s) | 226 |
| FspBI | CTAG | 1 cut(s) | 203 |
| GluI | GCNGC | 1 cut(s) | 226 |
| HaeIII | GGCC | 2 cut(s) | 56, 83 |
| Hin1II | CATG | 1 cut(s) | 53 |
| HincII | GTYRAC | 1 cut(s) | 154 |
| HindII | GTYRAC | 1 cut(s) | 154 |
| HpaI | GTTAAC | 1 cut(s) | 154 |
| Hpy166II | GTNNAC | 1 cut(s) | 154 |
| Hpy188III | TCNNGA | 2 cut(s) | 203, 296 |
| Hpy8I | GTNNAC | 1 cut(s) | 154 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 103 |
| HpyCH4V | TGCA | 2 cut(s) | 212, 337 |
| HpyF3I | CTNAG | 2 cut(s) | 117, 173 |
| Hsp92II | CATG | 1 cut(s) | 53 |
| KspAI | GTTAAC | 1 cut(s) | 154 |
| Kzo9I | GATC | 1 cut(s) | 205 |
| LpnPI | CCDG | 5 cut(s) | 53, 222, 306, 309, 312 |
| LweI | GCATC | 1 cut(s) | 289 |
| MaeI | CTAG | 1 cut(s) | 203 |
| MaeIII | GTNAC | 2 cut(s) | 97, 244 |
| MalI | GATC | 1 cut(s) | 207 |
| MboI | GATC | 1 cut(s) | 205 |
| MboII | GAAGA | 1 cut(s) | 177 |
| MluCI | AATT | 6 cut(s) | 43, 76, 107, 111, 306, 315 |
| MnlI | CCTC | 3 cut(s) | 17, 126, 303 |
| MseI | TTAA | 4 cut(s) | 110, 153, 281, 343 |
| NdeII | GATC | 1 cut(s) | 205 |
| NlaIII | CATG | 1 cut(s) | 53 |
| NlaIV | GGNNCC | 1 cut(s) | 84 |
| PkrI | GCNGC | 1 cut(s) | 227 |
| PshBI | ATTAAT | 1 cut(s) | 110 |
| PsiI | TTATAA | 1 cut(s) | 9 |
| PspN4I | GGNNCC | 1 cut(s) | 84 |
| PspPI | GGNCC | 1 cut(s) | 82 |
| SaqAI | TTAA | 4 cut(s) | 110, 153, 281, 343 |
| SatI | GCNGC | 1 cut(s) | 226 |
| Sau3AI | GATC | 1 cut(s) | 205 |
| Sau96I | GGNCC | 1 cut(s) | 82 |
| SetI | ASST | 2 cut(s) | 295, 343 |
| SfaNI | GCATC | 1 cut(s) | 289 |
| SfcI | CTRYAG | 1 cut(s) | 266 |
| Sse9I | AATT | 6 cut(s) | 43, 76, 107, 111, 306, 315 |
| SsiI | CCGC | 2 cut(s) | 225, 286 |
| SspI | AATATT | 1 cut(s) | 16 |
| SspMI | CTAG | 1 cut(s) | 203 |
| TaaI | ACNGT | 2 cut(s) | 64, 103 |
| TasI | AATT | 6 cut(s) | 43, 76, 107, 111, 306, 315 |
| TauI | GCSGC | 1 cut(s) | 228 |
| Tru1I | TTAA | 4 cut(s) | 110, 153, 281, 343 |
| Tru9I | TTAA | 4 cut(s) | 110, 153, 281, 343 |
| TscAI | CASTG | 1 cut(s) | 69 |
| TspDTI | ATGAA | 1 cut(s) | 38 |
| TspRI | CASTG | 1 cut(s) | 69 |
| VspI | ATTAAT | 1 cut(s) | 110 |
| XapI | RAATTY | 4 cut(s) | 43, 76, 306, 315 |
| XbaI | TCTAGA | 1 cut(s) | 202 |
| XspI | CTAG | 1 cut(s) | 203 |