Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

77704648 .. 77705583

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021736

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCCTCGTTGCTTCTCCGAGTGGGATTGCTTAGAGAAGTTGAGTTCTTGCTTTCCACAATGGAAAGTCAAGGAGTTTTGTTGGATAGTCAAGAAATTTACAGTGATTTGATTGAAGGAGATGTGAAGAAGGCGACGTTTGAGGGTGTCATTAGACTGCTTTGCAGGGATGGAAAGATTCAGGAGGCAAGAAATTTTGTCAAGAAGGCTATGGCTTTCGAACTCAAGCCTAGCAACTTAGTTGTAAATGAAGTTGCTTATGGATATTGTGAGAAGAAGGACTTTGATGATTTGATGAGCTTCTATGCTGAGATTAAGTGTGCCCCAGAAGTTATGGCCGGGAATAGGATTATGCATTCTCTTTGTAACGATTTTGGGACAAGAAGAGCAGAACCTTATTTGCAAGAATTAGAAATTTTAGGCTTCAATCCTGATGAGGTAACCTTTGGAATCATGATTGGCTGGAGCTGTCGTGAACGAAAACTTAAAAGTGCCTTTGTTTACCTATCTGAGATGTTGGGAAGACACCTAAACCCCCATATATGTAATCAGCGGGGTATTTATGGAGGGATTCTCTTAGCAGGCTATTGTAAAGTTAGAAAATTTGATGAAGCCAAAAGGATAGTTTTTGATATGGCAAGCCATGGACTGATTCAAAACTCTTCAGATGAGGATCCGCTATCCAAAGCATTTATGATTGGACATGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

238

Amino Acids

26.82

Weight (kDa)

5.81

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	553, 677
AclWI	GGATC	2 cut(s)	668, 681
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	4 cut(s)	96, 193, 414, 602
AcuI	CTGAAG	1 cut(s)	648
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	116, 427, 656
AluBI	AGCT	2 cut(s)	300, 468
AluI	AGCT	2 cut(s)	300, 468
AlwI	GGATC	2 cut(s)	668, 681
AoxI	GGCC	2 cut(s)	3, 336
ApoI	RAATTY	4 cut(s)	96, 193, 414, 602
AsuC2I	CCSGG	1 cut(s)	340
AsuII	TTCGAA	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	325
BamHI	GGATCC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	529
BccI	CCATC	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	340
BfaI	CTAG	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	529
BplI	GAGNNNNNCTC	2 cut(s)	558, 590
BpmI	CTGGAG	1 cut(s)	484
Bpu14I	TTCGAA	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	672
BsaJI	CCNNGG	1 cut(s)	643
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	300, 501
BseSI	GKGCMC	1 cut(s)	325
BshFI	GGCC	2 cut(s)	5, 338
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	391
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	5, 338
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	673
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	2 cut(s)	553, 677
BspANI	GGCC	2 cut(s)	5, 338
BspCNI	CTCAG	2 cut(s)	301, 502
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	675
BspPI	GGATC	2 cut(s)	668, 681
BspQI	GCTCTTC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	1 cut(s)	673
BssT1I	CCWWGG	1 cut(s)	643
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	2 cut(s)	379, 667
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	583, 640
BstDEI	CTNAG	5 cut(s)	32, 238, 309, 510, 577
BstDSI	CCRYGG	1 cut(s)	643
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	676
BstMBI	GATC	1 cut(s)	673
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BsuRI	GGCC	2 cut(s)	5, 338
BtgI	CCRYGG	1 cut(s)	643
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	583, 640
CciI	TCATGA	1 cut(s)	453
CviAII	CATG	3 cut(s)	454, 644, 704
DdeI	CTNAG	5 cut(s)	32, 238, 309, 510, 577
DpnI	GATC	1 cut(s)	675
DpnII	GATC	1 cut(s)	673
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	379, 667
EarI	CTCTTC	2 cut(s)	379, 667
Eco130I	CCWWGG	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	648
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	643
EcoT22I	ATGCAT	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	3 cut(s)	457, 647, 707
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	3 cut(s)	453, 643, 703
FauI	CCCGC	1 cut(s)	546
FokI	GGATG	1 cut(s)	182
FspBI	CTAG	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	5, 338
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	3 cut(s)	457, 647, 707
HinfI	GANTC	4 cut(s)	178, 450, 571, 652
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	2 cut(s)	476, 502
Hpy188I	TCNGA	3 cut(s)	20, 511, 667
Hpy188III	TCNNGA	6 cut(s)	92, 182, 202, 431, 454, 473
Hpy8I	GTNNAC	2 cut(s)	476, 502
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	4 cut(s)	110, 124, 199, 271
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	165, 355, 403
HpyF3I	CTNAG	5 cut(s)	32, 238, 309, 510, 577
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	457, 647, 707
Kzo9I	GATC	1 cut(s)	673
LguI	GCTCTTC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	465
LpnPI	CCDG	7 cut(s)	151, 167, 339, 352, 444, 448, 567
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	365, 439
MalI	GATC	1 cut(s)	675
MboI	GATC	1 cut(s)	673
MboII	GAAGA	5 cut(s)	139, 286, 396, 534, 654
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	6 cut(s)	96, 193, 407, 414, 602, 709
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	6 cut(s)	16, 136, 178, 430, 560, 664
Mph1103I	ATGCAT	1 cut(s)	357
MseI	TTAA	2 cut(s)	315, 486
MspA1I	CMGCKG	1 cut(s)	553
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	340
Mva1269I	GAATGC	1 cut(s)	355
NciI	CCSGG	1 cut(s)	340
NcoI	CCATGG	1 cut(s)	643
NdeII	GATC	1 cut(s)	673
NlaIII	CATG	3 cut(s)	457, 647, 707
NlaIV	GGNNCC	1 cut(s)	675
NsiI	ATGCAT	1 cut(s)	357
NspV	TTCGAA	1 cut(s)	219
PagI	TCATGA	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	379
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	4 cut(s)	178, 450, 571, 652
PspEI	GGTNACC	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	673
SapI	GCTCTTC	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	315, 486
Sau3AI	GATC	1 cut(s)	673
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	8 cut(s)	140, 302, 397, 441, 446, 470, 507, 531
SfuI	TTCGAA	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	6 cut(s)	96, 193, 407, 414, 602, 709
SsiI	CCGC	2 cut(s)	553, 677
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	219
TasI	AATT	6 cut(s)	96, 193, 407, 414, 602, 709
TfiI	GAWTC	4 cut(s)	178, 450, 571, 652
Tru1I	TTAA	2 cut(s)	315, 486
Tru9I	TTAA	2 cut(s)	315, 486
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	264, 624
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	4 cut(s)	96, 193, 414, 602
XspI	CTAG	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.