Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002362

Physical Location & Seq

Genomic Coordinates Reverse (-)

82840199 .. 82841287

Gene Structure 1089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG598800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAGACGAAGCAGCACCACCATAGCTCTATGCAATGAAATGCTTCAAGTTTTGTGTACCTGTTCACCCCACAAGCCTCACATCAAACAGGTTGGTTCTCTTTACTCTCTGTTCTCACTCTTCACCAATAACCACTGCCTCTCAACTACCACTTCTTCATCCCCAATTCCCCATCATCTTCAACAACACACAAAAACCAACACCCAAGTAGATTTATCTCCTAATTGTTTCAATGGTATAGCCCAATCTGTTATATTGAGGTGTTCCCAATATTTTGACAAGAGTAAGGGCAAAGACTTTGCCAATGCTTCTCTAAAAGACCTTCTTTTGGAGATTTCTGATTTAGTGCCTGAACAAACTCGTAGGCTTAGGCGGGTTTCGGCTCCGAAACCCGAAGATGTGCTTGAATTATTACTGGGTTTTGAATTGCAGTGTGCGCAAGTTGGATTTGAAGCTAGAAAGGTTGAGTCTTTGTGGGGAATTTTCAAGTGGGTTTGTGAAAAAGTTGAGGGCTTGAAGCATAAACCTCAGTCATGTGAGGTCATGGCCTCGTTGCTTCTCCGAGTGGGACTGCTTAGAGAAGTTGAGTTCTTGCTTTCCACAATGGAAAGTCAAGGAGTTTCGTTGGATAGTCAAGAAATTTACAGTGATTTGATTGAAGGGTATGTTGGTATTGGTGAGTTAGATAGGGCCATTTCGGTATATGATCGAATTAGGGGGCGTGTAGTGCCATCATTGCAGTGTTGTTGTGTTCTACTTGATCAATTGGTGGGAATGAGGAAGGCCGAATTGGCGTTTCAAGTTTGTAGTGAAATGGCAGAAATGGGTTTTGATTTGAGAGATGTGAAGAAGGCCACGTTTGAGGGTCTCATTAGACTGCTTTGCAGGGATGGAAAGATTCAGGAGGCAAGAAATTTTGTCATGAAGGCTATGGCTTTCAAACTCAAGCCTAGCAACTTAGTTTTAAATGAAGTTGCTTATGGATATTGTGAGAAGAAGGACTTTGATGATTTGATGAGCTTCTATGCTGAGATTAAGTTGCTTATGGATATTGTTACCGGTTGTACAGGAATTGCAACCATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048037 GO:0051536 GO:0051540 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

362

Amino Acids

40.69

Weight (kDa)

6.66

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15280
fragaria_vesca	FvH4_6g47953 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48150 FvH4_6g48880 FvH4_6g48880
malus_domestica	MD09G1053400.v1.1
prunus_persica	Prupe.3G265200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0167491 RchiOBHm_Chr2g0167571 RchiOBHm_Chr2g0167581
rosa_laevigata	RLG00000021724 RLG00000021736
rosa_multiflora	Rmu_sc0000056.1_g000010 Rmu_sc0000056.1_g000011 Rmu_sc0001970.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083370 Rroxscaffold_2G00083410 Rroxscaffold_2G00083440
rosa_rugosa	Rorug02G0530600
rosa_samantha	Rh2AG597900 Rh2AG598800 Rh2AG599200 Rh2AG599300 Rh2AG599400 Rh2BG609400 Rh2BG609800 Rh2BG609900 Rh2BG610000 Rh2CG580300 Rh2DG620700 Rh2DG621000 Rh2DG621100 Rh2DG621900 Rh2DG622000 Rh2DG622100 Rh2DG622600 Rh2DG622700
rosa_wichuraiana	Rw2G049750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	438
AciI	CCGC	1 cut(s)	373
AcsI	RAATTY	3 cut(s)	480, 639, 913
AfaI	GTAC	2 cut(s)	58, 1066
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgeI	ACCGGT	1 cut(s)	1058
AjuI	GAANNNNNNNTTGG	4 cut(s)	651, 683, 773, 805
AluBI	AGCT	3 cut(s)	26, 455, 1020
AluI	AGCT	3 cut(s)	26, 455, 1020
Alw26I	GTCTC	1 cut(s)	872
AoxI	GGCC	4 cut(s)	546, 690, 783, 852
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	3 cut(s)	480, 639, 913
AsiGI	ACCGGT	1 cut(s)	1058
Asp700I	GAANNNNTTC	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	690
AsuHPI	GGTGA	3 cut(s)	57, 115, 689
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	3 cut(s)	180, 739, 884
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	1 cut(s)	872
BfaI	CTAG	2 cut(s)	456, 951
BglI	GCCNNNNNGGC	1 cut(s)	791
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	690
BmiI	GGNNCC	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	929
BsaI	GGTCTC	1 cut(s)	872
BsaWI	WCCGGW	1 cut(s)	1058
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	1058
Bse1I	ACTGG	1 cut(s)	420
Bse3DI	GCAATG	2 cut(s)	40, 734
BseGI	GGATG	2 cut(s)	158, 895
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	2 cut(s)	40, 734
BseMII	CTCAG	2 cut(s)	542, 1020
BseNI	ACTGG	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	24
BshFI	GGCC	4 cut(s)	548, 692, 785, 854
BshTI	ACCGGT	1 cut(s)	1058
BsiSI	CCGG	1 cut(s)	1059
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	872
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	4 cut(s)	548, 692, 785, 854
Bso31I	GGTCTC	1 cut(s)	872
Bsp1407I	TGTACA	1 cut(s)	1064
Bsp143I	GATC	2 cut(s)	706, 760
BspACI	CCGC	1 cut(s)	373
BspANI	GGCC	4 cut(s)	548, 692, 785, 854
BspCNI	CTCAG	2 cut(s)	541, 1021
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	872
BsrDI	GCAATG	2 cut(s)	40, 734
BsrFI	RCCGGY	1 cut(s)	1058
BsrGI	TGTACA	1 cut(s)	1064
BsrI	ACTGG	1 cut(s)	420
BssAI	RCCGGY	1 cut(s)	1058
BssMI	GATC	2 cut(s)	706, 760
Bst4CI	ACNGT	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	1064
BstDEI	CTNAG	5 cut(s)	368, 528, 575, 958, 1029
BstF5I	GGATG	2 cut(s)	158, 895
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	2 cut(s)	709, 763
BstMAI	GTCTC	1 cut(s)	872
BstMBI	GATC	2 cut(s)	706, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	436, 727, 736, 791
BstV1I	GCAGC	1 cut(s)	24
BsuRI	GGCC	4 cut(s)	548, 692, 785, 854
BtsCI	GGATG	2 cut(s)	158, 895
BtsI	GCAGTG	3 cut(s)	133, 437, 746
BtsIMutI	CAGTG	4 cut(s)	133, 437, 652, 746
CciI	TCATGA	1 cut(s)	921
CfoI	GCGC	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	1058
Cfr13I	GGNCC	1 cut(s)	690
Csp6I	GTAC	2 cut(s)	57, 1065
CspAI	ACCGGT	1 cut(s)	1058
CviAII	CATG	3 cut(s)	534, 544, 922
CviQI	GTAC	2 cut(s)	57, 1065
DdeI	CTNAG	5 cut(s)	368, 528, 575, 958, 1029
DpnI	GATC	2 cut(s)	708, 762
DpnII	GATC	2 cut(s)	706, 760
DraI	TTTAAA	1 cut(s)	966
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	872
FaeI	CATG	3 cut(s)	537, 547, 925
FalI	AAGNNNNNCTT	6 cut(s)	309, 341, 387, 419, 986, 1018
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	3 cut(s)	533, 543, 921
FauI	CCCGC	1 cut(s)	366
FbaI	TGATCA	1 cut(s)	760
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	2 cut(s)	145, 902
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	2 cut(s)	456, 951
FspI	TGCGCA	1 cut(s)	438
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	1 cut(s)	13
HaeIII	GGCC	4 cut(s)	548, 692, 785, 854
HapII	CCGG	1 cut(s)	1059
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	3 cut(s)	537, 547, 925
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HinfI	GANTC	2 cut(s)	467, 898
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	3 cut(s)	57, 115, 689
Hpy166II	GTNNAC	2 cut(s)	57, 65
Hpy188I	TCNGA	3 cut(s)	340, 387, 563
Hpy188III	TCNNGA	3 cut(s)	635, 902, 922
Hpy8I	GTNNAC	2 cut(s)	57, 65
HpyAV	CCTTC	6 cut(s)	332, 653, 775, 844, 919, 991
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4IV	ACGT	1 cut(s)	857
HpyCH4V	TGCA	5 cut(s)	33, 430, 739, 885, 1076
HpyF10VI	GCNNNNNNNGC	4 cut(s)	436, 727, 736, 791
HpyF3I	CTNAG	5 cut(s)	368, 528, 575, 958, 1029
HpySE526I	ACGT	1 cut(s)	857
Hsp92II	CATG	3 cut(s)	537, 547, 925
HspAI	GCGC	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	2 cut(s)	706, 760
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	8 cut(s)	73, 74, 363, 401, 871, 887, 1053, 1072
Lsp1109I	GCAGC	1 cut(s)	24
MaeI	CTAG	2 cut(s)	456, 951
MaeII	ACGT	1 cut(s)	857
MaeIII	GTNAC	1 cut(s)	1054
MalI	GATC	2 cut(s)	708, 762
MboI	GATC	2 cut(s)	706, 760
MboII	GAAGA	6 cut(s)	112, 147, 170, 407, 859, 1006
MfeI	CAATTG	1 cut(s)	764
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	2 cut(s)	424, 606
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	2 cut(s)	965, 1035
MslI	CAYNNNNRTG	1 cut(s)	739
MspI	CCGG	1 cut(s)	1059
MunI	CAATTG	1 cut(s)	764
MwoI	GCNNNNNNNGC	4 cut(s)	436, 727, 736, 791
NdeII	GATC	2 cut(s)	706, 760
NlaIII	CATG	3 cut(s)	537, 547, 925
NlaIV	GGNNCC	1 cut(s)	384
NsbI	TGCGCA	1 cut(s)	438
PagI	TCATGA	1 cut(s)	921
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	898
PinAI	ACCGGT	1 cut(s)	1058
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	690
RsaI	GTAC	2 cut(s)	58, 1066
RsaNI	GTAC	2 cut(s)	57, 1065
RseI	CAYNNNNRTG	1 cut(s)	739
SaqAI	TTAA	2 cut(s)	965, 1035
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	2 cut(s)	706, 760
Sau96I	GGNCC	1 cut(s)	690
SchI	GAGTC	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	739
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
SsiI	CCGC	1 cut(s)	373
SspI	AATATT	1 cut(s)	272
SspMI	CTAG	2 cut(s)	456, 951
TaaI	ACNGT	1 cut(s)	647
TaiI	ACGT	1 cut(s)	860
TaqI	TCGA	1 cut(s)	709
TatI	WGTACW	1 cut(s)	1064
TfiI	GAWTC	1 cut(s)	898
Tru1I	TTAA	2 cut(s)	965, 1035
Tru9I	TTAA	2 cut(s)	965, 1035
TscAI	CASTG	4 cut(s)	140, 437, 652, 746
TseI	GCWGC	1 cut(s)	12
TspDTI	ATGAA	4 cut(s)	51, 147, 938, 984
TspRI	CASTG	4 cut(s)	140, 437, 652, 746
XapI	RAATTY	3 cut(s)	480, 639, 913
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	2 cut(s)	456, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.